View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2197_low_8 (Length: 368)

Name: NF2197_low_8
Description: NF2197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2197_low_8
NF2197_low_8
[»] chr5 (4 HSPs)
chr5 (19-350)||(2593591-2593924)
chr5 (183-290)||(27446028-27446136)
chr5 (183-290)||(43593326-43593434)
chr5 (183-290)||(43626120-43626228)
[»] chr3 (2 HSPs)
chr3 (203-342)||(1307026-1307164)
chr3 (183-290)||(22172082-22172190)
[»] chr8 (5 HSPs)
chr8 (203-290)||(26297587-26297675)
chr8 (203-290)||(26310844-26310932)
chr8 (183-290)||(18869444-18869552)
chr8 (203-290)||(19751330-19751418)
chr8 (203-345)||(26402143-26402284)
[»] scaffold0006 (2 HSPs)
scaffold0006 (203-345)||(6680-6821)
scaffold0006 (203-345)||(7192-7333)
[»] chr7 (1 HSPs)
chr7 (203-290)||(9188939-9189027)
[»] chr4 (1 HSPs)
chr4 (183-290)||(9228106-9228214)
[»] chr1 (1 HSPs)
chr1 (203-345)||(13599395-13599536)


Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-163; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 19 - 350
Target Start/End: Complemental strand, 2593924 - 2593591
Alignment:
Q  19 cactcccactctttgaattccaaatccttctatctctctcaccacttctcacttctctttgaatctcaaacttttgtcatcacaaggaatcactctatgg 118  Q
    ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2593924 cactctcactctttgaatcccaaatccttctatctctctcaccacttctcacttctctttgaatctcaaacttttgtcatcacaaggaatcactctatgg 2593825  T
Q  119 aaaatc-aggtcatgtgagcattaagatgggtgttgatatacttgaacaagtcattgaatgacgatttgaattacacaacgacaactcaagaggaagacg 217  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  2593824 aaaatccaggtcatgtgagcattaaggtgggtgttgatatacttgaacaagtcattgaatgacgatttgaattacacaaggacaactcaagaggaagacg 2593725  T
Q  218 ccttg-agaggtatgtggatgcgaactattcaggcaatttggaccataaaaaatccttatcggattttgtgtttgttgtatttgacacgactatattagt 316  Q
    ||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  2593724 ccttggaggggtatgtggatgcgaactattcaggcaatttggacgataaaaaatccttatcggattttgtgttttttgtatttgacacgactatattagt 2593625  T
Q  317 tgaaaggcaaaacaacaattcatggtggctatat 350  Q
    ||||||||||||||||||||||||||||||||||    
T  2593624 tgaaaggcaaaacaacaattcatggtggctatat 2593591  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 290
Target Start/End: Complemental strand, 27446136 - 27446028
Alignment:
Q  183 tttgaattacacaacgacaactcaagaggaagacgccttg-agaggtatgtggatgcgaactattcaggcaatttggaccataaaaaatccttatcggat 281  Q
    |||||| ||||||| | || ||||||| |||||||| ||| || ||||||| |||||| | ||| | |||||| |||||  || |||||||||||||| |    
T  27446136 tttgaagtacacaagggcagctcaagatgaagacgctttggaggggtatgttgatgcggattatgctggcaatgtggacactagaaaatccttatcgggt 27446037  T
Q  282 tttgtgttt 290  Q
    |||||||||    
T  27446036 tttgtgttt 27446028  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 290
Target Start/End: Complemental strand, 43593434 - 43593326
Alignment:
Q  183 tttgaattacacaacgacaactcaagaggaagacgccttg-agaggtatgtggatgcgaactattcaggcaatttggaccataaaaaatccttatcggat 281  Q
    |||||| ||||||| | || ||||||| |||||||| ||| || ||||||| |||||| | ||| | |||||| |||||  || |||||||||||||| |    
T  43593434 tttgaagtacacaagggcagctcaagatgaagacgctttggaggggtatgttgatgcggattatgcgggcaatgtggacactagaaaatccttatcgggt 43593335  T
Q  282 tttgtgttt 290  Q
    |||||||||    
T  43593334 tttgtgttt 43593326  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 290
Target Start/End: Complemental strand, 43626228 - 43626120
Alignment:
Q  183 tttgaattacacaacgacaactcaagaggaagacgccttg-agaggtatgtggatgcgaactattcaggcaatttggaccataaaaaatccttatcggat 281  Q
    |||||| ||||||| | || ||||||| |||||||| ||| || ||||||| |||||| | ||| | |||||| |||||  || |||||||||||||| |    
T  43626228 tttgaagtacacaagggcagctcaagatgaagacgctttggaggggtatgttgatgcggattatgcgggcaatgtggacactagaaaatccttatcgggt 43626129  T
Q  282 tttgtgttt 290  Q
    |||||||||    
T  43626128 tttgtgttt 43626120  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 203 - 342
Target Start/End: Complemental strand, 1307164 - 1307026
Alignment:
Q  203 ctcaagaggaagacgccttg-agaggtatgtggatgcgaactattcaggcaatttggaccataaaaaatccttatcggattttgtgtttgttgtatttga 301  Q
    |||||||||||||||| ||| || ||||||| |||||| ||||| | |||||| |||||  || |||||||||||||| ||||||||||  | | | ||     
T  1307164 ctcaagaggaagacgctttggaggggtatgttgatgcggactatgcgggcaatgtggacactagaaaatccttatcgggttttgtgtttactctttatgg 1307065  T
Q  302 cacgactatattagttgaaaggcaaaacaacaattcatggt 342  Q
    ||||||  ||||||||| |||||||| ||||||||| ||||    
T  1307064 cacgac--tattagttggaaggcaaatcaacaattcgtggt 1307026  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 290
Target Start/End: Original strand, 22172082 - 22172190
Alignment:
Q  183 tttgaattacacaacgacaactcaagaggaagacgccttg-agaggtatgtggatgcgaactattcaggcaatttggaccataaaaaatccttatcggat 281  Q
    |||||| ||||||| | || ||||||| |||||||| ||| || ||||||| |||||| | ||| |||||||  |||||  || |||||||||||||| |    
T  22172082 tttgaagtacacaagggcagctcaagatgaagacgctttggaggggtatgttgatgcggattatgcaggcaacgtggacactagaaaatccttatcgggt 22172181  T
Q  282 tttgtgttt 290  Q
    |||||||||    
T  22172182 tttgtgttt 22172190  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 203 - 290
Target Start/End: Complemental strand, 26297675 - 26297587
Alignment:
Q  203 ctcaagaggaagacgccttg-agaggtatgtggatgcgaactattcaggcaatttggaccataaaaaatccttatcggattttgtgttt 290  Q
    |||||||||||||||| ||| || ||||||| |||||||||||| | |||||| |||||  || |||||||||||||| ||||||||||    
T  26297675 ctcaagaggaagacgctttggaggggtatgttgatgcgaactatgcgggcaatgtggacactagaaaatccttatcgggttttgtgttt 26297587  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 203 - 290
Target Start/End: Complemental strand, 26310932 - 26310844
Alignment:
Q  203 ctcaagaggaagacgccttg-agaggtatgtggatgcgaactattcaggcaatttggaccataaaaaatccttatcggattttgtgttt 290  Q
    |||||||||||||||| ||| || ||||||| |||||||||||| | |||||| |||||  || |||||||||||||| ||||||||||    
T  26310932 ctcaagaggaagacgctttggaggggtatgttgatgcgaactatgcgggcaatgtggacactagaaaatccttatcgggttttgtgttt 26310844  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 183 - 290
Target Start/End: Original strand, 18869444 - 18869552
Alignment:
Q  183 tttgaattacacaacgacaactcaagaggaagacgccttg-agaggtatgtggatgcgaactattcaggcaatttggaccataaaaaatccttatcggat 281  Q
    |||||| ||||||| | || ||||||| |||||||| ||| || ||||||| |||||| ||||| | |||||| |||||  || |||||||||||||| |    
T  18869444 tttgaagtacacaagggcagctcaagatgaagacgcattggaggggtatgttgatgcggactatgcgggcaatgtggacactagaaaatccttatcgggt 18869543  T
Q  282 tttgtgttt 290  Q
    |||||||||    
T  18869544 tttgtgttt 18869552  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 290
Target Start/End: Original strand, 19751330 - 19751418
Alignment:
Q  203 ctcaagaggaagacgccttg-agaggtatgtggatgcgaactattcaggcaatttggaccataaaaaatccttatcggattttgtgttt 290  Q
    |||||||| ||||||| ||| || ||||||| |||||| ||||| | |||||| |||||   | |||||||||||||| ||||||||||    
T  19751330 ctcaagagaaagacgctttggaggggtatgttgatgcggactatgcgggcaatgtggacacaagaaaatccttatcgggttttgtgttt 19751418  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 345
Target Start/End: Original strand, 26402143 - 26402284
Alignment:
Q  203 ctcaagaggaagacgcctt-gagaggtatgtggatgcgaactattcaggcaatttggaccataaaaaatccttatcggattttgtgtttgttgtatttga 301  Q
    |||||||||||||||| || ||| ||||||| |||||| ||||| | |||||| |||||   | ||||||  |||||| ||||||||||  | ||| ||     
T  26402143 ctcaagaggaagacgctttggaggggtatgttgatgcggactatacgggcaatgtggacacaagaaaatctctatcgggttttgtgtttactctatatgg 26402242  T
Q  302 cacgactatattagttgaaaggcaaaacaacaattcatggtggc 345  Q
    ||||||  ||||||||| ||||| || ||||||| | |||||||    
T  26402243 cacgac--tattagttggaaggctaatcaacaatccgtggtggc 26402284  T

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Target: scaffold0006 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 345
Target Start/End: Complemental strand, 6821 - 6680
Alignment:
Q  203 ctcaagaggaagacgcctt-gagaggtatgtggatgcgaactattcaggcaatttggaccataaaaaatccttatcggattttgtgtttgttgtatttga 301  Q
    ||||||||||||| ||||| ||| ||||||| |||||  ||||| | || ||| |||||   | |||||| ||||||| ||||||||||  | ||| ||     
T  6821 ctcaagaggaagatgccttggaggggtatgttgatgcagactatgcgggtaatgtggacacaagaaaatctttatcgggttttgtgtttactctatatgg 6722  T
Q  302 cacgactatattagttgaaaggcaaaacaacaattcatggtggc 345  Q
    ||||||  ||||||||| |||||||| ||||||| | |||||||    
T  6721 cacgac--tattagttggaaggcaaatcaacaatccgtggtggc 6680  T

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Target: scaffold0006; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 345
Target Start/End: Complemental strand, 7333 - 7192
Alignment:
Q  203 ctcaagaggaagacgcctt-gagaggtatgtggatgcgaactattcaggcaatttggaccataaaaaatccttatcggattttgtgtttgttgtatttga 301  Q
    ||||||||||||| ||||| ||| ||||||| |||||  ||||| | || ||| |||||   | |||||| ||||||| ||||||||||  | ||| ||     
T  7333 ctcaagaggaagatgccttggaggggtatgttgatgcagactatgcgggtaatgtggacacaagaaaatctttatcgggttttgtgtttactctatatgg 7234  T
Q  302 cacgactatattagttgaaaggcaaaacaacaattcatggtggc 345  Q
    ||||||  ||||||||| |||||||| ||||||| | |||||||    
T  7233 cacgac--tattagttggaaggcaaatcaacaatccgtggtggc 7192  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 290
Target Start/End: Original strand, 9188939 - 9189027
Alignment:
Q  203 ctcaagaggaagacgcctt-gagaggtatgtggatgcgaactattcaggcaatttggaccataaaaaatccttatcggattttgtgttt 290  Q
    |||||||| ||||||| || ||| ||||||| |||||| ||||| | |||||| |||||   | |||||||||||||| ||||||||||    
T  9188939 ctcaagagaaagacgcttttgaggggtatgttgatgcggactatgcgggcaatgtggacacaagaaaatccttatcgggttttgtgttt 9189027  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 290
Target Start/End: Original strand, 9228106 - 9228214
Alignment:
Q  183 tttgaattacacaacgacaactcaagaggaagacgccttg-agaggtatgtggatgcgaactattcaggcaatttggaccataaaaaatccttatcggat 281  Q
    |||||| ||||||| | || ||||||| |||||||| ||| || ||||||| |||||| | ||| | |||||  |||||  || |||||||||||||| |    
T  9228106 tttgaagtacacaagggcagctcaagatgaagacgctttggaggggtatgttgatgcggattatgcgggcaacgtggacactagaaaatccttatcgggt 9228205  T
Q  282 tttgtgttt 290  Q
    |||||||||    
T  9228206 tttgtgttt 9228214  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 345
Target Start/End: Complemental strand, 13599536 - 13599395
Alignment:
Q  203 ctcaagaggaagacgcctt-gagaggtatgtggatgcgaactattcaggcaatttggaccataaaaaatccttatcggattttgtgtttgttgtatttga 301  Q
    ||||||||||||| ||||| ||| ||||||| |||||  ||||| | || ||| |||||   | |||||| ||||||| ||||||||||  | ||| ||     
T  13599536 ctcaagaggaagatgccttggaggggtatgttgatgcagactatgcgggtaatgtggacacaagaaaatctttatcgggttttgtgtttactctatatgg 13599437  T
Q  302 cacgactatattagttgaaaggcaaaacaacaattcatggtggc 345  Q
    ||||||  ||||||||| |||||||| ||||||| | |||||||    
T  13599436 cacgac--tattagttggaaggcaaatcaacaatccgtggtggc 13599395  T

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