View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2198_high_10 (Length: 339)

Name: NF2198_high_10
Description: NF2198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2198_high_10
NF2198_high_10
[»] chr4 (3 HSPs)
chr4 (20-326)||(11797461-11797756)
chr4 (126-184)||(24613676-24613734)
chr4 (137-184)||(30982853-30982900)
[»] chr6 (9 HSPs)
chr6 (126-184)||(16766723-16766781)
chr6 (126-185)||(4118307-4118366)
chr6 (126-169)||(9522917-9522960)
chr6 (126-184)||(17302583-17302641)
chr6 (126-184)||(25038046-25038104)
chr6 (124-169)||(785445-785490)
chr6 (137-178)||(9107351-9107392)
chr6 (126-175)||(21395292-21395341)
chr6 (137-201)||(8365477-8365541)
[»] scaffold0008 (1 HSPs)
scaffold0008 (126-201)||(263330-263405)
[»] chr7 (6 HSPs)
chr7 (126-201)||(6028651-6028726)
chr7 (126-175)||(9408318-9408367)
chr7 (126-182)||(24339668-24339724)
chr7 (126-180)||(7438732-7438786)
chr7 (126-184)||(26033436-26033494)
chr7 (126-180)||(43243103-43243157)
[»] chr1 (5 HSPs)
chr1 (126-201)||(32461422-32461496)
chr1 (126-164)||(26526751-26526789)
chr1 (126-180)||(31694689-31694743)
chr1 (126-180)||(47989523-47989577)
chr1 (126-182)||(18556433-18556489)
[»] chr8 (2 HSPs)
chr8 (126-184)||(2572031-2572089)
chr8 (126-184)||(22652002-22652060)
[»] chr5 (5 HSPs)
chr5 (126-184)||(21542056-21542114)
chr5 (126-200)||(12641700-12641774)
chr5 (126-184)||(18592099-18592157)
chr5 (126-184)||(21522776-21522834)
chr5 (126-184)||(21533342-21533400)
[»] chr3 (6 HSPs)
chr3 (128-184)||(17005594-17005650)
chr3 (126-201)||(55212989-55213063)
chr3 (126-184)||(14209139-14209197)
chr3 (126-175)||(1509565-1509614)
chr3 (128-184)||(15796269-15796325)
chr3 (137-201)||(41961608-41961672)
[»] scaffold0086 (1 HSPs)
scaffold0086 (126-185)||(2954-3013)
[»] chr2 (4 HSPs)
chr2 (128-175)||(4882680-4882727)
chr2 (126-185)||(30717504-30717563)
chr2 (126-184)||(28524452-28524510)
chr2 (134-184)||(34337156-34337206)


Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 20 - 326
Target Start/End: Complemental strand, 11797756 - 11797461
Alignment:
Q  20 attatgagtttgatccatctgtctatgaagcatggacacaaacatggacacatgacacgacattgacacgggcacatcaacaccaataaaattttgnnnn 119  Q
    ||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||||||        
T  11797756 attatgagtttgatccatctgtctatgaagcatggacaca------------tgacacgacattgacacgggcacatcaacaccaataaaattttgaaaa 11797669  T
Q  120 nnnn-tgacataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacacgtgttggatactgagacacgctttcgatcagaagtgtc 218  Q
         ||||||||||||||||||| |||||||||| |||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  11797668 aaaaatgacataatttaatgtaatcacaagtgtcggtgttgtgtcgttgtcagacataacacgtgttggatactgggacacgctttcgatcagaagtgtc 11797569  T
Q  219 agtgcaacaaagttctatgttattaaagtagtccgttaaaactgaactacgttaatgcaagagaatagcttcatttggaagaacaagcttcatgatatgc 318  Q
    ||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11797568 agtgcaacaaagttctatgttgttaaagtaatccgttaaaattgaactacgttaatgcaagagaatagcttcatttggaagaacaagcttcatgatatgc 11797469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 184
Target Start/End: Complemental strand, 24613734 - 24613676
Alignment:
Q  126 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacacgtgt 184  Q
    |||||||| ||||||| ||||||||||| |||  |||||||||||||||| ||||||||    
T  24613734 acataattcaatgtaagtacaagtgtcggtgtcatgtcggtgtcagacacgacacgtgt 24613676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 137 - 184
Target Start/End: Complemental strand, 30982900 - 30982853
Alignment:
Q  137 tgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacacgtgt 184  Q
    |||||||| |||||||| ||| ||||||||||||||||| ||||||||    
T  30982900 tgtaattataagtgtcggtgtcgtgtcggtgtcagacacgacacgtgt 30982853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 126 - 184
Target Start/End: Original strand, 16766723 - 16766781
Alignment:
Q  126 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacacgtgt 184  Q
    |||||||| | ||||||||||||||||| ||| ||||||||||| ||||||||||||||    
T  16766723 acataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggacacaacacgtgt 16766781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 126 - 185
Target Start/End: Complemental strand, 4118366 - 4118307
Alignment:
Q  126 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacacgtgtt 185  Q
    |||||||| ||||||||||||||||| | | ||||||| ||||| ||||||| |||||||    
T  4118366 acataattaaatgtaattacaagtgttggttttgtgtcagtgtcggacacaatacgtgtt 4118307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 126 - 169
Target Start/End: Original strand, 9522917 - 9522960
Alignment:
Q  126 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtc 169  Q
    |||||||| | ||||||||||||||||| |||||||||||||||    
T  9522917 acataattcagtgtaattacaagtgtcggtgttgtgtcggtgtc 9522960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 184
Target Start/End: Original strand, 17302583 - 17302641
Alignment:
Q  126 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacacgtgt 184  Q
    |||||||| ||||||||||||||||||  ||| ||||| || | |||||||||||||||    
T  17302583 acataattcaatgtaattacaagtgtcattgtcgtgtcagtattagacacaacacgtgt 17302641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 184
Target Start/End: Complemental strand, 25038104 - 25038046
Alignment:
Q  126 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacacgtgt 184  Q
    |||||||||| ||||||||||| ||||| | |||||| |||||| ||||| ||||||||    
T  25038104 acataatttagtgtaattacaaatgtcggtattgtgttggtgtccgacacgacacgtgt 25038046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 169
Target Start/End: Complemental strand, 785490 - 785445
Alignment:
Q  124 tgacataatttaatgtaattacaagtgtcgctgttgtgtcggtgtc 169  Q
    |||||||||| |||||||| |||||||||| ||| |||||||||||    
T  785490 tgacataattcaatgtaatcacaagtgtcggtgtcgtgtcggtgtc 785445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 178
Target Start/End: Complemental strand, 9107392 - 9107351
Alignment:
Q  137 tgtaattacaagtgtcgctgttgtgtcggtgtcagacacaac 178  Q
    ||||||||||||||||| ||| ||||||||||| ||||||||    
T  9107392 tgtaattacaagtgtcggtgtcgtgtcggtgtcggacacaac 9107351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 175
Target Start/End: Complemental strand, 21395341 - 21395292
Alignment:
Q  126 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacac 175  Q
    |||||||||| ||||||||||||||||| ||| ||||| ||||| |||||    
T  21395341 acataatttagtgtaattacaagtgtcggtgtcgtgtcagtgtcggacac 21395292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 137 - 201
Target Start/End: Complemental strand, 8365541 - 8365477
Alignment:
Q  137 tgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacacgtgttggatactgagacacgc 201  Q
    ||||||||||||||||| ||| |||||||| || ||||| ||||||||  || |||| |||||||    
T  8365541 tgtaattacaagtgtcggtgtcgtgtcggtatcggacacgacacgtgtccgacactgggacacgc 8365477  T

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Target: scaffold0008 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 201
Target Start/End: Complemental strand, 263405 - 263330
Alignment:
Q  126 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacacgtgttggatactgagacacgc 201  Q
    |||||||| | |||||||| |||||||  ||| ||||||||||||||||| ||||||||| |||||  ||||||||    
T  263405 acataattcagtgtaattataagtgtcagtgtcgtgtcggtgtcagacacgacacgtgttcgataccaagacacgc 263330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 201
Target Start/End: Original strand, 6028651 - 6028726
Alignment:
Q  126 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacacgtgttggatactgagacacgc 201  Q
    |||||||||||||||||||||| ||||| ||| ||||| |||||  |||| ||||| ||| || ||||||||||||    
T  6028651 acataatttaatgtaattacaaatgtcggtgtcgtgtcagtgtcgaacacgacacgagttcgacactgagacacgc 6028726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 126 - 175
Target Start/End: Complemental strand, 9408367 - 9408318
Alignment:
Q  126 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacac 175  Q
    |||||||||| ||||||||||||||||| ||| || ||||||||||||||    
T  9408367 acataatttagtgtaattacaagtgtcggtgtcgtatcggtgtcagacac 9408318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 182
Target Start/End: Original strand, 24339668 - 24339724
Alignment:
Q  126 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacacgt 182  Q
    |||||||| | ||||||||||||||||| ||| ||||||||||| ||||| ||||||    
T  24339668 acataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggacacgacacgt 24339724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 180
Target Start/End: Original strand, 7438732 - 7438786
Alignment:
Q  126 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacac 180  Q
    |||||||| ||||||||||||||||||| |||  ||||||||||| |||| ||||    
T  7438732 acataattcaatgtaattacaagtgtcggtgtcatgtcggtgtcaaacacgacac 7438786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 184
Target Start/End: Complemental strand, 26033494 - 26033436
Alignment:
Q  126 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacacgtgt 184  Q
    |||||||| | ||||||||||||||||| | | ||||||||||||||||  ||||||||    
T  26033494 acataattcagtgtaattacaagtgtcggtctcgtgtcggtgtcagacatgacacgtgt 26033436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 180
Target Start/End: Original strand, 43243103 - 43243157
Alignment:
Q  126 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacac 180  Q
    |||||||||||||||||||||||||||| ||| ||||  |||||  |||||||||    
T  43243103 acataatttaatgtaattacaagtgtcgatgtcgtgtttgtgtcgaacacaacac 43243157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 201
Target Start/End: Complemental strand, 32461496 - 32461422
Alignment:
Q  126 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacacgtgttggatactgagacacgc 201  Q
    |||||||||||||||||||||||||| | || |||||||||||| ||||| ||||||||  || |||| |||||||    
T  32461496 acataatttaatgtaattacaagtgttggtg-tgtgtcggtgtcggacacgacacgtgtctgacactgggacacgc 32461422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 164
Target Start/End: Complemental strand, 26526789 - 26526751
Alignment:
Q  126 acataatttaatgtaattacaagtgtcgctgttgtgtcg 164  Q
    |||||||||||| ||||||||||||||| ||||||||||    
T  26526789 acataatttaatataattacaagtgtcggtgttgtgtcg 26526751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 180
Target Start/End: Complemental strand, 31694743 - 31694689
Alignment:
Q  126 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacac 180  Q
    |||||||| | | ||||||||||||||| ||| ||||||||||| ||||||||||    
T  31694743 acataattcagtataattacaagtgtcggtgtcgtgtcggtgtcggacacaacac 31694689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 180
Target Start/End: Original strand, 47989523 - 47989577
Alignment:
Q  126 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacac 180  Q
    |||||||| | ||||||||||||||||| ||| ||||||||||| ||||| ||||    
T  47989523 acataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggacacgacac 47989577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 182
Target Start/End: Complemental strand, 18556489 - 18556433
Alignment:
Q  126 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacacgt 182  Q
    |||||||||||||||||||||||| | | ||| ||| ||||||||||| | ||||||    
T  18556489 acataatttaatgtaattacaagtattggtgtcgtgacggtgtcagacccgacacgt 18556433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 184
Target Start/End: Complemental strand, 2572089 - 2572031
Alignment:
Q  126 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacacgtgt 184  Q
    |||||||||| ||||||||||||||||| ||| ||||| ||||| ||||| ||||||||    
T  2572089 acataatttagtgtaattacaagtgtcggtgtcgtgtctgtgtcggacacgacacgtgt 2572031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 184
Target Start/End: Original strand, 22652002 - 22652060
Alignment:
Q  126 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacacgtgt 184  Q
    |||||||| ||| ||||||||||||||| ||| ||||||||||| ||||| ||| ||||    
T  22652002 acataattcaatataattacaagtgtcggtgtcgtgtcggtgtcggacacgacatgtgt 22652060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 184
Target Start/End: Original strand, 21542056 - 21542114
Alignment:
Q  126 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacacgtgt 184  Q
    |||||||| | ||||||||||||||||| ||| ||||||||||| ||||| ||||||||    
T  21542056 acataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggacacgacacgtgt 21542114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 200
Target Start/End: Original strand, 12641700 - 12641774
Alignment:
Q  126 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacacgtgttggatactgagacacg 200  Q
    |||||||||| | ||||| || |||||  ||| |||| |||||||||||||||||||||| || || ||||||||    
T  12641700 acataatttagtataattgcacgtgtcagtgtcgtgttggtgtcagacacaacacgtgttcgacacggagacacg 12641774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 184
Target Start/End: Original strand, 18592099 - 18592157
Alignment:
Q  126 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacacgtgt 184  Q
    |||||||| |||||||||| | ||| || ||| ||||||||||| ||||||||||||||    
T  18592099 acataattcaatgtaattatatgtgccggtgtcgtgtcggtgtcggacacaacacgtgt 18592157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 184
Target Start/End: Original strand, 21522776 - 21522834
Alignment:
Q  126 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacacgtgt 184  Q
    |||||||| | ||||||||||| ||||| ||| ||||||||||| ||||| ||||||||    
T  21522776 acataattcagtgtaattacaattgtcggtgtcgtgtcggtgtcggacacgacacgtgt 21522834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 184
Target Start/End: Original strand, 21533342 - 21533400
Alignment:
Q  126 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacacgtgt 184  Q
    |||||||| | ||||||||||| ||||| ||| ||||||||||| ||||| ||||||||    
T  21533342 acataattcagtgtaattacaattgtcggtgtcgtgtcggtgtcggacacgacacgtgt 21533400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 184
Target Start/End: Complemental strand, 17005650 - 17005594
Alignment:
Q  128 ataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacacgtgt 184  Q
    |||||| | |||||||| |||||||| |||||||| ||||||||||| |||||||||    
T  17005650 ataattcagtgtaattataagtgtcggtgttgtgttggtgtcagacataacacgtgt 17005594  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 126 - 201
Target Start/End: Original strand, 55212989 - 55213063
Alignment:
Q  126 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacacgtgttggatactgagacacgc 201  Q
    |||||||||| || |||||||||||||| || |||||||||||| | ||||||||||||  || || |||||||||    
T  55212989 acataatttagtgcaattacaagtgtcggtg-tgtgtcggtgtcgggcacaacacgtgtccgacaccgagacacgc 55213063  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 184
Target Start/End: Original strand, 14209139 - 14209197
Alignment:
Q  126 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacacgtgt 184  Q
    |||||||| | ||||||||||||||||  ||| ||||||||||| ||||| ||||||||    
T  14209139 acataattcagtgtaattacaagtgtcagtgtcgtgtcggtgtcggacacgacacgtgt 14209197  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 175
Target Start/End: Original strand, 1509565 - 1509614
Alignment:
Q  126 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacac 175  Q
    |||||||||| ||||||||||||||||| ||| || |||||||| |||||    
T  1509565 acataatttagtgtaattacaagtgtcggtgtcgtttcggtgtccgacac 1509614  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 184
Target Start/End: Complemental strand, 15796325 - 15796269
Alignment:
Q  128 ataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacacgtgt 184  Q
    |||||| | ||||||||||| ||||| ||| |||| |||||| ||||||||||||||    
T  15796325 ataattcagtgtaattacaattgtcggtgtcgtgtaggtgtcggacacaacacgtgt 15796269  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 137 - 201
Target Start/End: Complemental strand, 41961672 - 41961608
Alignment:
Q  137 tgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacacgtgttggatactgagacacgc 201  Q
    ||||||||||||||||| ||| |||||||| || ||||| ||||||||  || |||| |||||||    
T  41961672 tgtaattacaagtgtcggtgtcgtgtcggtatcggacacgacacgtgtccgacactgggacacgc 41961608  T

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Target: scaffold0086 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 126 - 185
Target Start/End: Original strand, 2954 - 3013
Alignment:
Q  126 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacacgtgtt 185  Q
    |||||||||| ||||||||||||| ||  ||| |||||||| |||||||| |||||||||    
T  2954 acataatttagtgtaattacaagtatcagtgtcgtgtcggtatcagacacgacacgtgtt 3013  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 128 - 175
Target Start/End: Complemental strand, 4882727 - 4882680
Alignment:
Q  128 ataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacac 175  Q
    |||||| | ||||||||||||||||| ||| |||||||||||||||||    
T  4882727 ataattcagtgtaattacaagtgtcgatgtcgtgtcggtgtcagacac 4882680  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 126 - 185
Target Start/End: Complemental strand, 30717563 - 30717504
Alignment:
Q  126 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacacgtgtt 185  Q
    |||||||| | ||||||||||||||||| ||| |||||| |||| ||||| |||||||||    
T  30717563 acataattcagtgtaattacaagtgtcgatgtcgtgtcgttgtcggacacgacacgtgtt 30717504  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 184
Target Start/End: Original strand, 28524452 - 28524510
Alignment:
Q  126 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacacgtgt 184  Q
    |||||||| | |||||||| | |||||| |||||||| |||||| ||||||||||||||    
T  28524452 acataattcagtgtaattatatgtgtcgttgttgtgttggtgtcggacacaacacgtgt 28524510  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 184
Target Start/End: Complemental strand, 34337206 - 34337156
Alignment:
Q  134 taatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacacgtgt 184  Q
    |||| ||||||||||||||| |||  |||||||||| ||||||||||||||    
T  34337206 taatttaattacaagtgtcggtgtcctgtcggtgtcggacacaacacgtgt 34337156  T

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