View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2198_high_16 (Length: 267)
Name: NF2198_high_16
Description: NF2198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2198_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 20 - 257
Target Start/End: Complemental strand, 24547476 - 24547239
Alignment:
| Q |
20 |
cattgaagcccacaatggcaggttcaccgtaaaattaattccaagaaactcttcccaggttttgttcaatcgaatcactgcccaaaccccggtaagtgtc |
119 |
Q |
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| T |
24547476 |
cattgaagcccacaatggcaggttcaccgtaaaattaattccaagaaactcttcccaggttttgttcaatcgaatcactgcccaaaccccggtaagtgtc |
24547377 |
T |
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| Q |
120 |
catcattatgattatctcatggaactatcgatcggaactccaccggtaaagacctatgctcaagtagataccggtagtgaccttatatggttccaatgca |
219 |
Q |
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| T |
24547376 |
catcattatgattatctcatggaactctcgatcggaactccaccggtaaagacctatgctcaagtagataccggtagtgaccttatatggctccaatgca |
24547277 |
T |
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| Q |
220 |
ttccttgcactaactgctacaaacaactcaaccctatg |
257 |
Q |
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| T |
24547276 |
ttccttgcactaactgctacaaacaactcaaccctatg |
24547239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 111 - 257
Target Start/End: Complemental strand, 24539996 - 24539850
Alignment:
| Q |
111 |
gtaagtgtccatcattatgattatctcatggaactatcgatcggaactccaccggtaaagacctatgctcaagtagataccggtagtgaccttatatggt |
210 |
Q |
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| T |
24539996 |
gtaagtgcctatgattgtgagtatctcatggaactctccattggaactccgccaataaagatctatgctgaagcagacaccggcagtgaccttgtatggt |
24539897 |
T |
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| Q |
211 |
tccaatgcattccttgcactaactgctacaaacaactcaaccctatg |
257 |
Q |
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| T |
24539896 |
tccaatgcattccttgcaccaaatgctataaacaacaaaaccctatg |
24539850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 18 - 257
Target Start/End: Complemental strand, 15798592 - 15798353
Alignment:
| Q |
18 |
cacattgaagcccacaatggcaggttcaccgtaaaattaattccaagaaactcttcccaggttttgttcaatcgaatcactgcccaaaccccggtaagtg |
117 |
Q |
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||||||||||||||||||||| ||||||||| ||||| ||||| |||||||||||| ||| ||| |||||||||| |||| |||| |||| ||||||| |
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| T |
15798592 |
cacattgaagcccacaatggcgggttcaccggcaaattgattcctagaaactcttccaaggattttttcaatcgaaacactatccaatcccccgtaagtg |
15798493 |
T |
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| Q |
118 |
tccatcattatgattatctcatggaactatcgatcggaactccaccggtaaagacctatgctcaagtagataccggtagtgaccttatatggttccaatg |
217 |
Q |
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| T |
15798492 |
ccaatcattatgattatctcatggaactctcgatcggtactccaccggtaaagatctatgctcaagcagataccggtagtgaccttatatggctccaatg |
15798393 |
T |
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| Q |
218 |
cattccttgcactaactgctacaaacaactcaaccctatg |
257 |
Q |
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| T |
15798392 |
cattccttgcactaactgttacaaacaactaaaccctatg |
15798353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 174 - 256
Target Start/End: Complemental strand, 43059061 - 43058979
Alignment:
| Q |
174 |
tatgctcaagtagataccggtagtgaccttatatggttccaatgcattccttgcactaactgctacaaacaactcaaccctat |
256 |
Q |
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||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||| |||||||| |
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| T |
43059061 |
tatgctcaaatagataccggtagtgaccttacatggttccaatgcattccttgcactaaatactacaaacaactaaaccctat |
43058979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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