View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2198_high_2 (Length: 579)
Name: NF2198_high_2
Description: NF2198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2198_high_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 540; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 19 - 570
Target Start/End: Original strand, 41446029 - 41446580
Alignment:
| Q |
19 |
tgagatacaggaagaaacttcaccttgaatctcggtatcagacaagttgaggtgtgtgagattgacaaaagcaccaaactgagatgaaagttgagttggg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41446029 |
tgagatacaggaagaaacttcaccttgaatctcggtatcagacaagttgaggtgtgtgagattgacaaaagcaccaaactgagatgaaagttgagttggg |
41446128 |
T |
|
| Q |
119 |
aataatctattatgagcaaggttgagtgtttggagatgagaaagatgaaaaagtgtactgttgggatgaataataccttgaaggtcattgcagctgaggt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41446129 |
aataatctattatgagcaaggttgagtgtttggagatgagaaagatgaaaaagtgtactgttgggatgaataataccttgaaggtcattgcagctgaggt |
41446228 |
T |
|
| Q |
219 |
ctaagccaattacgtgaccagaaattgtgtcacaggtgacaccaagccatgagcaacaatctgtaccattttgccatgttgatacctctgcataagctag |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41446229 |
ctaagccaattacgtgaccagaaattgtgtcacaggtgacaccaagccatgagcaacaatctgtaccattttgccatgttgatacctctgcataagctag |
41446328 |
T |
|
| Q |
319 |
tttaccacaattagtatcagtagtatctatgttgaaagaggctttgaattgaagcaaggaagaactgtcatcgaggcagcatataaaatgagaagaagat |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41446329 |
tttaccacaattagtatcagtagtatctatgttgaaagaggctttgaattgaagcaaggaagaactgtcatcgaggcagcatataaaatgagaagaagat |
41446428 |
T |
|
| Q |
419 |
ataacatgagtgagcaacaagaaaaactgcaaacacagaattagcaaccaacccatgtatgatgtatgatcagactagttgtggaggagctcaagtgttt |
518 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
41446429 |
ataacatgagtgagcaacaagaaaaactgcaaacacagaattagcaaccaacccatgtatgatgtatgatcagactagttgtggaggagctcaagggttt |
41446528 |
T |
|
| Q |
519 |
actatttgctagaaagtgcacatggaattgcaaatgatgaatatagaattat |
570 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
41446529 |
actatttgctagagagtgcacatggaattgcaaatgatgaatatataattat |
41446580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 19 - 563
Target Start/End: Original strand, 41433305 - 41433846
Alignment:
| Q |
19 |
tgagatacaggaagaaacttcaccttgaatctcggtatcagacaagttgaggtgtgtgagattgacaaaagcaccaaactgagatgaaagttgagttggg |
118 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
41433305 |
tgagatataggaagaaacttcaccttgaatcttggtatcagacaagtcgaggtgtgtaagattgacaaaagcaccaaattgggatgaaagttgagttggg |
41433404 |
T |
|
| Q |
119 |
aataatctattatgagcaaggttgagtgtttggagatgagaaagatgaaaaagtgtactgttgggatgaataataccttgaaggtcattgcagctgaggt |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
41433405 |
aataatctattatgagcaaggttgagtgtttggagatgagaaagatgaaaaagtgtactgttgggatgaatcataccttgaaggccattgcagctgaggt |
41433504 |
T |
|
| Q |
219 |
ctaagccaattacgtgaccagaaattgtgtcacaggt----gacaccaagccatgagcaacaatctgtaccattttgccatgttgatacctctgcataag |
314 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41433505 |
ctaagccaattacgtgaccagaaactgtgtcacaggtaacaaacaccaagccatgagcaacaatctgtaccattttgccatgttgatacctctgcataag |
41433604 |
T |
|
| Q |
315 |
ctagtttaccacaattagtatcagtagtatctatgttgaaagaggctttgaattgaagcaaggaagaactgtcatcgaggcagcatataaaatg---aga |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||| |
|
|
| T |
41433605 |
ctagtttaccacaattagtatcagtagtatctatgttgaaagaggctttgaattgaagcaaggaagaactgtcatcgaggcggcataaaaaatgagaaga |
41433704 |
T |
|
| Q |
412 |
agaagatataacatgagtgagcaacaagaaaaactgcaaacacagaattagcaaccaacccatgtatgatgtatgatcagactagttgtggaggagctca |
511 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
41433705 |
agaagatctaacatgagtg---cacaagaaaaactgcaaacacagaattagcaaccaaccc-------atgtatgatcagactagttgtggaggagcttt |
41433794 |
T |
|
| Q |
512 |
agtgtttactatttgctagaaagtgcacatggaattgcaaatgatgaatata |
563 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
41433795 |
agtgtttgctatttgctagaaagtgcacatggaattgcaaatgacgaatata |
41433846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 223 - 299
Target Start/End: Complemental strand, 34230793 - 34230717
Alignment:
| Q |
223 |
gccaattacgtgaccagaaattgtgtcacaggtgacaccaagccatgagcaacaatctgtaccattttgccatgttg |
299 |
Q |
| |
|
|||||| ||||||||||| | |||||||| ||||||||| |||||||||| ||||| || ||||||| |||||||| |
|
|
| T |
34230793 |
gccaatgacgtgaccagatacggtgtcacacgtgacaccatgccatgagcagcaatcagtcccatttttccatgttg |
34230717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 223 - 299
Target Start/End: Complemental strand, 34238848 - 34238772
Alignment:
| Q |
223 |
gccaattacgtgaccagaaattgtgtcacaggtgacaccaagccatgagcaacaatctgtaccattttgccatgttg |
299 |
Q |
| |
|
|||||| ||||||||||| | |||||||| ||||||||| |||||||||| ||||| || ||||||| |||||||| |
|
|
| T |
34238848 |
gccaatgacgtgaccagatacggtgtcacacgtgacaccatgccatgagcagcaatcagtcccatttttccatgttg |
34238772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 136 - 299
Target Start/End: Original strand, 42130750 - 42130913
Alignment:
| Q |
136 |
aaggttgagtgtttggagatgagaaagatgaaaaagtgtactgttgggat-gaataataccttgaaggtcattgcagctgaggtctaagccaattacgtg |
234 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| ||||| || |||| |||| ||||| |||| | | |||| |||| | | |||| ||||| |
|
|
| T |
42130750 |
aaggttgagtgtttggagatgaacaagatgaaaaagggtactattaggattgaatg-tacctgtaaggccttcacagccaaggttgaggtcaatcacgtg |
42130848 |
T |
|
| Q |
235 |
accagaaattgtgtcacaggtgacaccaagccatgagcaacaatctgtaccattttgccatgttg |
299 |
Q |
| |
|
|||||| | ||||||||| ||||| ||| ||||||||| ||||| || ||||||| |||||||| |
|
|
| T |
42130849 |
accagagactgtgtcacacgtgacgccattccatgagcagcaatcagtcccatttttccatgttg |
42130913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 131 - 202
Target Start/End: Complemental strand, 41570099 - 41570028
Alignment:
| Q |
131 |
tgagcaaggttgagtgtttggagatgagaaagatgaaaaagtgtactgttgggatgaataataccttgaagg |
202 |
Q |
| |
|
|||| ||||||||||| ||||||||||| |||||||||||| || |||| |||| ||| ||||||||||| |
|
|
| T |
41570099 |
tgagaaaggttgagtgattggagatgagcaagatgaaaaagagtgttgttaggataaattttaccttgaagg |
41570028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 223 - 299
Target Start/End: Original strand, 12250433 - 12250509
Alignment:
| Q |
223 |
gccaattacgtgaccagaaattgtgtcacaggtgacaccaagccatgagcaacaatctgtaccattttgccatgttg |
299 |
Q |
| |
|
|||||| || |||||| | ||||||||||| ||||||||| |||||||||| ||||| || |||||||||||||||| |
|
|
| T |
12250433 |
gccaatcacatgaccatagattgtgtcacatgtgacaccatgccatgagcagcaatcagtcccattttgccatgttg |
12250509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University