View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2198_low_10 (Length: 364)
Name: NF2198_low_10
Description: NF2198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2198_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 18 - 358
Target Start/End: Original strand, 42025832 - 42026170
Alignment:
| Q |
18 |
gcaataacccaagtgcagttgttgtggcacgtgctaaccaaataagtgacattcctaagaaacattcattgtttggtactgtttatgccattgacaatcc |
117 |
Q |
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| T |
42025832 |
gcaataacccaagtgcagttgttgtggcacgtgctaaccaaacaagtgacattcctaagaaacattcattgtttggtactgtttatgccattgacaatcc |
42025931 |
T |
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| Q |
118 |
tcttagggaaggtcctgaagaaacatcaaatgtggttggaaatgcacaagatctttatgtggcatctctagccaaagtgaagatgtgacacttactatgt |
217 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||| |
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| T |
42025932 |
tcttagggaaggtcctgaagaaacatcaaatgtagttggaaatgcacaaggtctttatgtggcatct--agccagagtgaagatgtgacacttactatgt |
42026029 |
T |
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| Q |
218 |
atgttgattatgctttcacctctggtgaattaaatggaagctcctttagtgttctttcgaggaatccggtgagggaaccgacgagggaactcgcggtggt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42026030 |
atgttgattatgctttcacctctggtgaattaaatggaagctcctttagtgttctttcgaggaatccggtgagggaaccgacgagggaactcgcggtggt |
42026129 |
T |
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| Q |
318 |
cggaggaagaggaatgtttaggatggccacaggttctgctc |
358 |
Q |
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|||||||||||||| ||||||||||||||| |||| ||||| |
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| T |
42026130 |
cggaggaagaggaaagtttaggatggccactggttttgctc |
42026170 |
T |
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