View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2198_low_11 (Length: 349)

Name: NF2198_low_11
Description: NF2198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2198_low_11
NF2198_low_11
[»] chr6 (7 HSPs)
chr6 (7-178)||(9550824-9550988)
chr6 (179-349)||(3118046-3118217)
chr6 (179-349)||(3986905-3987075)
chr6 (180-349)||(14022955-14023124)
chr6 (179-349)||(13697590-13697759)
chr6 (179-347)||(24208467-24208635)
chr6 (179-349)||(15345659-15345827)
[»] chr1 (9 HSPs)
chr1 (179-349)||(34307137-34307308)
chr1 (181-349)||(39249864-39250033)
chr1 (179-349)||(2509045-2509216)
chr1 (179-349)||(46901734-46901905)
chr1 (181-346)||(19258674-19258839)
chr1 (179-346)||(28647377-28647544)
chr1 (243-349)||(9642929-9643036)
chr1 (287-349)||(10146987-10147049)
chr1 (263-349)||(29099838-29099923)
[»] chr2 (11 HSPs)
chr2 (179-349)||(33732590-33732760)
chr2 (179-349)||(44958134-44958305)
chr2 (179-349)||(16089843-16090012)
chr2 (182-349)||(3830900-3831065)
chr2 (179-343)||(37498862-37499029)
chr2 (229-349)||(14573016-14573136)
chr2 (179-349)||(36315582-36315753)
chr2 (179-347)||(6376238-6376401)
chr2 (178-349)||(37914235-37914406)
chr2 (236-349)||(24137149-24137266)
chr2 (177-340)||(41188799-41188963)
[»] chr7 (25 HSPs)
chr7 (177-349)||(36346562-36346734)
chr7 (178-349)||(7699881-7700053)
chr7 (178-349)||(7700079-7700251)
chr7 (178-349)||(7700277-7700449)
chr7 (178-349)||(7700475-7700647)
chr7 (179-349)||(26972202-26972373)
chr7 (179-349)||(28307494-28307665)
chr7 (179-349)||(31148311-31148481)
chr7 (179-348)||(45782659-45782829)
chr7 (179-349)||(34108447-34108618)
chr7 (179-341)||(34828094-34828256)
chr7 (179-347)||(5811163-5811331)
chr7 (179-349)||(42220963-42221133)
chr7 (179-347)||(23980154-23980322)
chr7 (179-349)||(13108169-13108338)
chr7 (181-349)||(30887721-30887890)
chr7 (179-328)||(46475066-46475216)
chr7 (229-349)||(36957450-36957570)
chr7 (231-349)||(21807374-21807492)
chr7 (229-347)||(15020305-15020420)
chr7 (241-335)||(20086690-20086784)
chr7 (236-349)||(38321030-38321143)
chr7 (275-328)||(42950109-42950162)
chr7 (179-272)||(29953571-29953665)
chr7 (305-336)||(29953661-29953692)
[»] chr8 (15 HSPs)
chr8 (179-349)||(30432360-30432530)
chr8 (179-349)||(36189237-36189406)
chr8 (177-349)||(10203685-10203858)
chr8 (187-349)||(44081801-44081964)
chr8 (179-349)||(18184574-18184744)
chr8 (179-349)||(42162619-42162790)
chr8 (179-349)||(12665365-12665537)
chr8 (170-348)||(33726033-33726212)
chr8 (179-349)||(31318826-31318997)
chr8 (179-348)||(43186049-43186218)
chr8 (235-349)||(42668838-42668951)
chr8 (279-349)||(31547-31617)
chr8 (229-348)||(35849502-35849623)
chr8 (229-322)||(38845073-38845165)
chr8 (263-349)||(3690686-3690772)
[»] chr5 (17 HSPs)
chr5 (175-349)||(39370948-39371123)
chr5 (179-349)||(14831565-14831736)
chr5 (179-349)||(40887941-40888112)
chr5 (179-333)||(31800595-31800749)
chr5 (177-349)||(2237297-2237470)
chr5 (179-349)||(13347149-13347320)
chr5 (219-349)||(1815656-1815786)
chr5 (182-348)||(27553376-27553542)
chr5 (234-346)||(9408094-9408206)
chr5 (236-348)||(17225341-17225451)
chr5 (274-349)||(33404531-33404606)
chr5 (213-349)||(19596102-19596237)
chr5 (180-348)||(4300544-4300712)
chr5 (179-299)||(42683670-42683791)
chr5 (244-348)||(41003915-41004018)
chr5 (239-349)||(19124532-19124640)
chr5 (282-349)||(12164272-12164339)
[»] chr3 (22 HSPs)
chr3 (179-349)||(21559582-21559753)
chr3 (179-349)||(51339783-51339951)
chr3 (177-349)||(46111941-46112114)
chr3 (179-349)||(34749897-34750068)
chr3 (179-349)||(30735495-30735665)
chr3 (180-349)||(22894701-22894870)
chr3 (179-349)||(44000010-44000181)
chr3 (181-349)||(36749427-36749596)
chr3 (229-349)||(36370388-36370508)
chr3 (177-349)||(38231314-38231486)
chr3 (179-340)||(39467101-39467262)
chr3 (179-349)||(48200706-48200877)
chr3 (177-349)||(39072276-39072443)
chr3 (274-349)||(29460681-29460756)
chr3 (274-349)||(29471533-29471608)
chr3 (219-348)||(20856194-20856320)
chr3 (236-348)||(53638157-53638269)
chr3 (241-349)||(50966151-50966256)
chr3 (241-349)||(51069286-51069391)
chr3 (179-278)||(29472901-29473000)
chr3 (270-349)||(29820390-29820469)
chr3 (280-348)||(5417684-5417752)
[»] chr4 (14 HSPs)
chr4 (177-349)||(21390953-21391125)
chr4 (179-349)||(44275727-44275897)
chr4 (179-349)||(3672295-3672466)
chr4 (179-349)||(7217786-7217957)
chr4 (179-349)||(28093095-28093266)
chr4 (179-349)||(6112651-6112821)
chr4 (179-349)||(49243836-49244006)
chr4 (181-349)||(35544933-35545102)
chr4 (179-349)||(46192380-46192551)
chr4 (179-348)||(45829257-45829426)
chr4 (174-349)||(51038784-51038961)
chr4 (177-349)||(52191198-52191370)
chr4 (239-338)||(54849820-54849919)
chr4 (287-348)||(36157857-36157918)
[»] scaffold0062 (1 HSPs)
scaffold0062 (172-349)||(6739-6917)
[»] scaffold0043 (1 HSPs)
scaffold0043 (179-349)||(87162-87333)
[»] scaffold0277 (1 HSPs)
scaffold0277 (305-343)||(5943-5981)


Alignment Details
Target: chr6 (Bit Score: 146; Significance: 7e-77; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 7 - 178
Target Start/End: Complemental strand, 9550988 - 9550824
Alignment:
Q  7 acatcatcaaattatttagaatgcaacagaaaatgactatatacacttgtattttgagttttgaagaagaatttgagaatggtgaaagtcaaattataga 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||    
T  9550988 acatcatcaaattatttagaatgcaacagaaaatgactatatacacttgtattttga-------agaagaatttgagaatggtgaaagtcaaattataga 9550896  T
Q  107 ggttagaatcgagtggaccataatggtagtaggtaaactcatcaaataagacttcagagataattttaacat 178  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9550895 ggttagaatcgagtggaccataatggtagtaggtaaactcatcaaataagacttcagagataattttaacat 9550824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 179 - 349
Target Start/End: Original strand, 3118046 - 3118217
Alignment:
Q  179 ggaaaaagataggtaaacaccctttttcatgcatctcttgtgtaca-tccaatgtgttaggggtattttagtaattttatattatatcatcacccctttt 277  Q
    ||||||||||||||| ||| |||||||||| |||||||| |||||| ||| |||| ||||||||||||||||||||||| || || ||| ||||| ||||    
T  3118046 ggaaaaagataggtagacatcctttttcatacatctcttatgtacactcccatgtattaggggtattttagtaattttacatcatgtcaccacccttttt 3118145  T
Q  278 catctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 349  Q
     |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  3118146 tatctattctttcaatgtttttgccacgtgtcacaaatgtgtgtgagtgtaaaagggtgtatgccacctaag 3118217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 179 - 349
Target Start/End: Original strand, 3986905 - 3987075
Alignment:
Q  179 ggaaaaagataggtaaacaccctttttcatgcatctcttgtgtacatccaatgtgttaggggtattttagtaattttatattatatcatcaccccttttc 278  Q
    ||||||||||||||| ||| | |||||||| ||| | || |||| | || |||| ||| |||||||| |||||||||| || |||| |||| ||||||||    
T  3986905 ggaaaaagataggtagacatcatttttcatacatttattatgtataccccatgtattaagggtatttgagtaattttacatcatattatcatcccttttc 3987004  T
Q  279 atctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 349  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3987005 atctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 3987075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 180 - 349
Target Start/End: Complemental strand, 14023124 - 14022955
Alignment:
Q  180 gaaaaagataggtaaacaccctttttcatgcatctcttgtgtacatccaatgtgttaggggtattttagtaattttatattatatcatcaccccttttca 279  Q
    |||||||||||||| ||||||||||| || || |||   |||||| |  |||||||||||||||||||||||||| | || | ||| ||||||||| |||    
T  14023124 gaaaaagataggtagacacccttttttatacacctcccatgtacacctcatgtgttaggggtattttagtaatttcacatcacatcgtcaccccttgtca 14023025  T
Q  280 tctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 349  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  14023024 tctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 14022955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 179 - 349
Target Start/End: Complemental strand, 13697759 - 13697590
Alignment:
Q  179 ggaaaaagataggtaaacaccctttttcatgcatctcttgtgtacatccaatgtgttaggggtattttagtaattttatattatatcatcaccccttttc 278  Q
    ||||||||||||||| | | | |||||||| |||  ||| |||||| || ||||||||| | ||||||||||||||||||| |||||||||||| |||||    
T  13697759 ggaaaaagataggtagagatcatttttcatacattacttatgtacaccccatgtgttagagatattttagtaattttatatcatatcatcacccgttttc 13697660  T
Q  279 atctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 349  Q
    ||||||||||||||||||||| |||||| |||||||||||| | |||||||||||||| ||| || |||||    
T  13697659 atctcttctttcaatgtttttaccacgtatcacaaatgtgtat-ggtgtaaaagggtgcatgtcatctaag 13697590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 179 - 347
Target Start/End: Complemental strand, 24208635 - 24208467
Alignment:
Q  179 ggaaaaagataggtaaacaccctttttcatgcatctcttgtgtacatccaatgtgttaggggtattttagtaattttatattatatcatcaccccttttc 278  Q
    ||||||||||||||| ||| ||||||| || || ||||  | |||| |  |||||||||||||||||||||||||| | || | ||| |||||| |||||    
T  24208635 ggaaaaagataggtagacatccttttttatacacctctcatttacacctcatgtgttaggggtattttagtaatttcacatcacatcctcaccctttttc 24208536  T
Q  279 atctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccaccta 347  Q
    |||||||||||||||||||||||||| | ||||||||||||||||||||||||  |||||| |||||||    
T  24208535 atctcttctttcaatgtttttgccacatatcacaaatgtgtgtgggtgtaaaatagtgtataccaccta 24208467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 179 - 349
Target Start/End: Original strand, 15345659 - 15345827
Alignment:
Q  179 ggaaaaagataggtaaacaccctttttcatgcatctcttgtgtacatccaatgtgttaggggtattttagtaattttatattatatcatcaccccttttc 278  Q
    ||||||| ||||||| ||| | |||||||| ||  |||| |||||| || |||| ||||||| |||| |||||||| |||| |||||||||||  |||||    
T  15345659 ggaaaaaaataggtagacatcttttttcatacacttcttatgtacaccctatgtattaggggcatttgagtaatttgatatcatatcatcaccttttttc 15345758  T
Q  279 atctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 349  Q
    |||| |||||||||||||||||||||||||||||||  ||| |||||||||||| || |||||||||||||    
T  15345759 atcttttctttcaatgtttttgccacgtgtcacaaa--tgtatgggtgtaaaagagtatatgccacctaag 15345827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 179 - 349
Target Start/End: Original strand, 34307137 - 34307308
Alignment:
Q  179 ggaaaaagataggtaaacaccctttttcatgcatctcttgtgtaca-tccaatgtgttaggggtattttagtaattttatattatatcatcacccctttt 277  Q
    ||||||||||||||| ||||| |||||||| || ||||| |||||| ||| |||||||||||||||||||||||||||| || |||||||||||| ||||    
T  34307137 ggaaaaagataggtagacaccttttttcatacacctcttatgtacactcccatgtgttaggggtattttagtaattttacatcatatcatcacccttttt 34307236  T
Q  278 catctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 349  Q
    ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  34307237 catatcttctttcaatgtttttgccacgtgtcacaaatgtgtgtggatgtaaaagggtgtatgccacctaag 34307308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 181 - 349
Target Start/End: Original strand, 39249864 - 39250033
Alignment:
Q  181 aaaaagataggtaaacaccctttttcatgcatctcttgtgtacatcca-atgtgttaggggtattttagtaattttatattatatcatcaccccttttca 279  Q
    ||||||||||||| ||||| |||||||| || ||||| |||||| ||  |||| ||||||||||||||||||||||| ||||||||| || || ||||||    
T  39249864 aaaaagataggtagacaccttttttcatacacctcttatgtacacccccatgtattaggggtattttagtaattttacattatatcaccatcctttttca 39249963  T
Q  280 tctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 349  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  39249964 tctcttctttcaatgtttttgccacgtgtcacaaatgtgtatgggtgtaaaagggtgtatgccacctaag 39250033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 179 - 349
Target Start/End: Complemental strand, 2509216 - 2509045
Alignment:
Q  179 ggaaaaagataggtaaacaccctttttcatgcatctcttgtgtacatcca-atgtgttaggggtattttagtaattttatattatatcatcacccctttt 277  Q
    ||||||||||||||| ||||  |||||||| || ||||| |||||| ||  |||| |||||| |||||||||||||||| || |||||| ||||| ||||    
T  2509216 ggaaaaagataggtagacactttttttcatacacctcttatgtacaccctcatgtattagggatattttagtaattttacatcatatcaccacccttttt 2509117  T
Q  278 catctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 349  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  2509116 catctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaaggatgtatgtcacctaag 2509045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 179 - 349
Target Start/End: Original strand, 46901734 - 46901905
Alignment:
Q  179 ggaaaaagataggtaaacaccctttttcatgcatctcttgtgtacatc-caatgtgttaggggtattttagtaattttatattatatcatcacccctttt 277  Q
    ||||||||||||||| ||| |||||||||| ||| |||| |||||| | | |||| | ||| |||||| |||||||||| || |||||||||||| ||||    
T  46901734 ggaaaaagataggtagacatcctttttcatacatttcttatgtacaccgccatgtatcaggagtatttgagtaattttacatcatatcatcacccttttt 46901833  T
Q  278 catctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 349  Q
    |||||||||||| ||||||||||||||||||||||||| ||||| ||||||||| |||||||| ||||||||    
T  46901834 catctcttcttttaatgtttttgccacgtgtcacaaatatgtgttggtgtaaaatggtgtatgtcacctaag 46901905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 181 - 346
Target Start/End: Original strand, 19258674 - 19258839
Alignment:
Q  181 aaaaagataggtaaacaccctttttcatgcatctcttgtgtacatccaatgtgttaggggtattttagtaattttatattatatcatcaccccttttcat 280  Q
    ||||||||||||| ||||||||||| || |||||||  |||||| || ||||||||||  ||||||| |||||| | || | |||| |||||||||||||    
T  19258674 aaaaagataggtagacacccttttttatacatctctcatgtacaccccatgtgttaggaatattttaataatttcacatcacatcaccaccccttttcat 19258773  T
Q  281 ctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacct 346  Q
    ||||| |||||||||||||||||| |||||||||| | ||||||||||||| ||||||||||||||    
T  19258774 ctcttttttcaatgtttttgccacatgtcacaaatatatgtgggtgtaaaaaggtgtatgccacct 19258839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 179 - 346
Target Start/End: Complemental strand, 28647544 - 28647377
Alignment:
Q  179 ggaaaaagataggtaaacaccctttttcatgcatctcttgtgtacatccaatgtgttaggggtattttagtaattttatattatatcatcaccccttttc 278  Q
    ||||||||||||||| ||||||||||| || |||||||  ||||||||| ||||||||||  ||||||| |||||| | || | |||| |||||||||||    
T  28647544 ggaaaaagataggtagacacccttttttatacatctctcatgtacatcccatgtgttaggaatattttaataatttcacatcacatcaccaccccttttc 28647445  T
Q  279 atctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacct 346  Q
    |||| ||||||||||||||||||||  | |||||||| ||||||||||||||| | ||||||| ||||    
T  28647444 atctattctttcaatgtttttgccaaatatcacaaatatgtgtgggtgtaaaaagatgtatgcaacct 28647377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 243 - 349
Target Start/End: Original strand, 9642929 - 9643036
Alignment:
Q  243 ttttagtaattttatattatatcatcaccccttt-tcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgc 341  Q
    |||||||||||| | || ||||||||||||| || ||||||||||||||| |||||||| || ||||||||| | ||||||||||| ||| ||| |||||    
T  9642929 ttttagtaatttcacatcatatcatcacccccttctcatctcttctttcattgtttttgtcatgtgtcacaattatgtgtgggtgttaaaaggtatatgc 9643028  T
Q  342 cacctaag 349  Q
    || |||||    
T  9643029 catctaag 9643036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 287 - 349
Target Start/End: Complemental strand, 10147049 - 10146987
Alignment:
Q  287 tttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 349  Q
    ||||| |||||||||||| |||||||| |||||||||| || |||||||||||||||||||||    
T  10147049 tttcactgtttttgccacatgtcacaattgtgtgtgggggtcaaagggtgtatgccacctaag 10146987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 263 - 349
Target Start/End: Complemental strand, 29099923 - 29099838
Alignment:
Q  263 atcatcaccccttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 349  Q
    ||||||||||||||| || |||| |||||||||||||| ||| ||||||||||||||||||  || |||| |||||||||| |||||    
T  29099923 atcatcaccccttttaatttcttttttcaatgtttttgtcacatgtcacaaatgtgtgtggacgt-aaagagtgtatgccatctaag 29099838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 119; Significance: 9e-61; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 179 - 349
Target Start/End: Complemental strand, 33732760 - 33732590
Alignment:
Q  179 ggaaaaagataggtaaacaccctttttcatgcatctcttgtgtacatccaatgtgttaggggtattttagtaattttatattatatcatcaccccttttc 278  Q
    ||||||||||||||| |||||||||||||| || ||||| |||||| || || | ||||||||||||||||||||||| || |||||| ||||| |||||    
T  33732760 ggaaaaagataggtagacaccctttttcatacacctcttatgtacaccccatatattaggggtattttagtaattttacatcatatcaccaccctttttc 33732661  T
Q  279 atctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 349  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  33732660 atctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 33732590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 179 - 349
Target Start/End: Complemental strand, 44958305 - 44958134
Alignment:
Q  179 ggaaaaagataggtaaacaccctttttcatgcatctcttgtgtacatcca-atgtgttaggggtattttagtaattttatattatatcatcacccctttt 277  Q
    ||||||||||||||| ||| |||||||||| || ||||| |||| | ||  |||||||||||||||||||||||||||| || |||||||||||| ||||    
T  44958305 ggaaaaagataggtagacatcctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatcatatcatcacccttttt 44958206  T
Q  278 catctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 349  Q
     |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  44958205 tatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 44958134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 179 - 349
Target Start/End: Complemental strand, 16090012 - 16089843
Alignment:
Q  179 ggaaaaagataggtaaacaccctttttcatgcatctcttgtgtacatccaatgtgttaggggtattttagtaattttatattatatcatcaccccttttc 278  Q
    ||||||||||||||| ||||| |||||||| || ||||| |||||| || |||||||||||||||||||||||||||| || |||||| ||||  ||||     
T  16090012 ggaaaaagataggtagacaccttttttcatacacctcttatgtacaccccatgtgttaggggtattttagtaattttacatcatatcaccacctttttt- 16089914  T
Q  279 atctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 349  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  16089913 atctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacttaag 16089843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 182 - 349
Target Start/End: Original strand, 3830900 - 3831065
Alignment:
Q  182 aaaagataggtaaacaccctttttcatgcatctcttgtgtacatccaatgtgttaggggtattttagtaattttatattatatcatcaccccttttcatc 281  Q
    |||||||||||| |||||||||||||| || ||||| |||||| || ||||||||||||||| |||||||||||| || | || |||||| |||||||||    
T  3830900 aaaagataggtagacaccctttttcatacacctcttatgtacaccccatgtgttaggggtatattagtaattttacatcagataatcaccacttttcatc 3830999  T
Q  282 tcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 349  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| ||||||||    
T  3831000 tcttctttcaatgtttttgccacgtgtcacaaa--tgtgtgggtgtaaaagggtgtatgtcacctaag 3831065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 179 - 343
Target Start/End: Original strand, 37498862 - 37499029
Alignment:
Q  179 ggaaaaagataggtaaacaccctttttcatgcatctcttgtgtacatcca-atgtgttaggggtattttagtaattttatattatatcatcacccc--tt 275  Q
    ||||||||||||||| ||||||||||| || || ||||| |||||||||  |||||||||||||||||||||||||||| || ||||||||||||   ||    
T  37498862 ggaaaaagataggtagacacccttttttatacacctcttatgtacatccccatgtgttaggggtattttagtaattttacatcatatcatcaccctcttt 37498961  T
Q  276 ttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgcca 343  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||    
T  37498962 ttcatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgagtgtaaaaggatgtatgcca 37499029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 229 - 349
Target Start/End: Complemental strand, 14573136 - 14573016
Alignment:
Q  229 atgtgttaggggtattttagtaattttatattatatcatcaccccttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgta 328  Q
    |||||||||||||||||||||||||||| || |||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  14573136 atgtgttaggggtattttagtaattttacatcatatcatcacccttttccatctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgta 14573037  T
Q  329 aaagggtgtatgccacctaag 349  Q
    |||||||| ||||||||||||    
T  14573036 aaagggtggatgccacctaag 14573016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 179 - 349
Target Start/End: Complemental strand, 36315753 - 36315582
Alignment:
Q  179 ggaaaaagataggtaaacaccctttttc-atgcatctcttgtgtacatccaatgtgttaggggtattttagtaattttatattatatcatcacccctttt 277  Q
    ||||||||||||||| ||| |||||||  || || ||||| |||||| |  |||||| |||||||||||| | |||| | || | || |||||| |||||    
T  36315753 ggaaaaagataggtagacatccttttttgatacacctcttatgtacacctcatgtgtcaggggtattttaatcatttcacatcacattatcacctctttt 36315654  T
Q  278 catctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 349  Q
     |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  36315653 tatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 36315582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 179 - 347
Target Start/End: Original strand, 6376238 - 6376401
Alignment:
Q  179 ggaaaaagataggtaaacaccctttttcatgcatctcttgtgtacatccaatgtgttaggggtattttagtaattttatattatatcatcaccccttttc 278  Q
    ||||||||||||||| ||| ||||||| || || |||   ||||||||  ||||||||| |||||||||||||||| | || | ||| |||||| |||||    
T  6376238 ggaaaaagataggtagacatccttttttatacacctcccatgtacatctcatgtgttagaggtattttagtaatttcacatcacatcctcacccattttc 6376337  T
Q  279 atctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccaccta 347  Q
    ||||||||||||||||     ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  6376338 atctcttctttcaatg-----gccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccaccta 6376401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 178 - 349
Target Start/End: Original strand, 37914235 - 37914406
Alignment:
Q  178 tggaaaaagataggtaaacaccctttttc-atgcatctcttgtgtacatccaatgtgttaggggtattttagtaattttatattatatcatcaccccttt 276  Q
    |||||||||||||||| |||||||||||  || || ||||| |||||| || ||||   |||| ||||||| | |||| | || | || |||||||||||    
T  37914235 tggaaaaagataggtagacacccttttttgatacacctcttatgtacaccccatgtaccaggg-tattttaatcatttcacatcacattatcaccccttt 37914333  T
Q  277 tcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 349  Q
    | |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||    
T  37914334 ttatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtggatgtaaaagggtgtatgccacctaag 37914406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 236 - 349
Target Start/End: Original strand, 24137149 - 24137266
Alignment:
Q  236 aggggtattttagtaattttatattatatcatcaccccttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtg----ggtgtaaaa 331  Q
    ||||||||||||||||||| | || | ||| ||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||    ||||| |||    
T  24137149 aggggtattttagtaatttcacatcacatcctcatcccttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtgggtaggtgtcaaa 24137248  T
Q  332 gggtgtatgccacctaag 349  Q
    |||||||| |||||||||    
T  24137249 gggtgtataccacctaag 24137266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 177 - 340
Target Start/End: Complemental strand, 41188963 - 41188799
Alignment:
Q  177 atggaaaaagataggtaaacaccctttt-tcatgcatctcttgtgtacatccaatgtgttaggggtattttagtaattttatattatatcatcacccctt 275  Q
    ||||||||||||||| | |||||||||| | || || ||||  ||||||||  |||||| || | |||||||||||||||| || | ||||||| |||||    
T  41188963 atggaaaaagataggcagacacccttttgttatacacctctcatgtacatcacatgtgtcagagatattttagtaattttacatcacatcatcatccctt 41188864  T
Q  276 ttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatg 340  Q
    ||||| || | |||||||||||||||||| ||||| |||| ||| | | | ||||||||||||||    
T  41188863 ttcatatcatttttcaatgtttttgccacatgtcataaatatgtatagatataaaagggtgtatg 41188799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 118; Significance: 4e-60; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 177 - 349
Target Start/End: Original strand, 36346562 - 36346734
Alignment:
Q  177 atggaaaaagataggtaaacaccctttttcatgcatctcttgtgtacatcca-atgtgttaggggtattttagtaattttatattatatcatcacccctt 275  Q
    ||||||||||||||||| |||||||||||||| || ||||| |||||| ||  |||||||||||||||||||||||||||| || |||||||||||  ||    
T  36346562 atggaaaaagataggtagacaccctttttcatacacctcttatgtacaccctcatgtgttaggggtattttagtaattttacatcatatcatcacct-tt 36346660  T
Q  276 ttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 349  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  36346661 ttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtctgggtgtaaaagggtgtatgccacctaag 36346734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 178 - 349
Target Start/End: Original strand, 7699881 - 7700053
Alignment:
Q  178 tggaaaaagataggtaaacaccctttttcatgcatctcttgtgtacatcca-atgtgttaggggtattttagtaattttatattatatcatcaccccttt 276  Q
    ||||||||||||||||||||||||||||||| || ||||| | |||| |   |||||||| |||||||||||||||||||||| ||||||||| || |||    
T  7699881 tggaaaaagataggtaaacaccctttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatatcatcatcctttt 7699980  T
Q  277 tcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 349  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  7699981 ttatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaag 7700053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 178 - 349
Target Start/End: Original strand, 7700079 - 7700251
Alignment:
Q  178 tggaaaaagataggtaaacaccctttttcatgcatctcttgtgtacatcca-atgtgttaggggtattttagtaattttatattatatcatcaccccttt 276  Q
    ||||||||||||||||||||||||||||||| || ||||| | |||| |   |||||||| |||||||||||||||||||||| ||||||||| || |||    
T  7700079 tggaaaaagataggtaaacaccctttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatatcatcatcctttt 7700178  T
Q  277 tcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 349  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  7700179 ttatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaag 7700251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 178 - 349
Target Start/End: Original strand, 7700277 - 7700449
Alignment:
Q  178 tggaaaaagataggtaaacaccctttttcatgcatctcttgtgtacatcca-atgtgttaggggtattttagtaattttatattatatcatcaccccttt 276  Q
    ||||||||||||||||||||||||||||||| || ||||| | |||| |   |||||||| |||||||||||||||||||||| ||||||||| || |||    
T  7700277 tggaaaaagataggtaaacaccctttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatatcatcatcctttt 7700376  T
Q  277 tcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 349  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  7700377 ttatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaag 7700449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 178 - 349
Target Start/End: Original strand, 7700475 - 7700647
Alignment:
Q  178 tggaaaaagataggtaaacaccctttttcatgcatctcttgtgtacatcca-atgtgttaggggtattttagtaattttatattatatcatcaccccttt 276  Q
    ||||||||||||||||||||||||||||||| || ||||| | |||| |   |||||||| |||||||||||||||||||||| ||||||||| || |||    
T  7700475 tggaaaaagataggtaaacaccctttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatatcatcatcctttt 7700574  T
Q  277 tcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 349  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  7700575 ttatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaag 7700647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 179 - 349
Target Start/End: Original strand, 26972202 - 26972373
Alignment:
Q  179 ggaaaaagataggtaaacaccctttttcatgcatctcttgtgtacatcca-atgtgttaggggtattttagtaattttatattatatcatcacccctttt 277  Q
    ||||||||||||||| |||||||||||||| ||  |||| |||||| ||  |||| |||||||||||| |||||||||| || |||||||||||| ||||    
T  26972202 ggaaaaagataggtagacaccctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtaattttacatcatatcatcacccttttt 26972301  T
Q  278 catctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 349  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  26972302 catctctcctttcaatgtttttgccacgtgtcataaatgtgtgtgggtgtaaaagggtgtatgccacctaag 26972373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 179 - 349
Target Start/End: Original strand, 28307494 - 28307665
Alignment:
Q  179 ggaaaaagataggtaaacaccctttttcatgcatctcttgtgtacatcca-atgtgttaggggtattttagtaattttatattatatcatcacccctttt 277  Q
    ||||||||||||||| ||| | |||||||| || ||||| |||||| ||  || ||||| ||||||||||||||||||| || |||||||||||| ||||    
T  28307494 ggaaaaagataggtagacatcttttttcatacacctcttatgtacacccccatatgttaagggtattttagtaattttacatcatatcatcacccttttt 28307593  T
Q  278 catctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 349  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  28307594 catctcttctttcaatgtttttgccacgtgtcgcaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 28307665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 179 - 349
Target Start/End: Complemental strand, 31148481 - 31148311
Alignment:
Q  179 ggaaaaagataggtaaacaccctttttcatgcatctcttgtgtacatccaatgtgttaggggtattttagtaattttatattatatcatcaccccttttc 278  Q
    ||||||||||||||| |||| ||||||||| || ||||| |  ||| || || |||||||  |||||||||||||||| || |||||||||||| |||||    
T  31148481 ggaaaaagataggtagacactctttttcatacacctcttatacacaccccatatgttaggcttattttagtaattttacatcatatcatcacccattttc 31148382  T
Q  279 atctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 349  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  31148381 atctcttctttcaatgtttttgccatgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 31148311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 179 - 348
Target Start/End: Original strand, 45782659 - 45782829
Alignment:
Q  179 ggaaaaagataggtaaacaccctttttcatgcatctcttgtgtaca-tccaatgtgttaggggtattttagtaattttatattatatcatcacccctttt 277  Q
    ||||||||||||||| ||||||||||| || ||  | || |||||| ||| |||||||||||||||||||||||||||| || |||||||||||| ||||    
T  45782659 ggaaaaagataggtagacacccttttttatacactttttatgtacactcccatgtgttaggggtattttagtaattttacatcatatcatcacccttttt 45782758  T
Q  278 catctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaa 348  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||    
T  45782759 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaatgatgtatgccacctaa 45782829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 179 - 349
Target Start/End: Complemental strand, 34108618 - 34108447
Alignment:
Q  179 ggaaaaagataggtaaacaccctttttcatgcatctcttgtgtaca-tccaatgtgttaggggtattttagtaattttatattatatcatcacccctttt 277  Q
    |||||||||||||||||||||||||||||| ||  |||| |||||| ||| |||| |||||||||||| |||||||||| || |||||||||||| ||||    
T  34108618 ggaaaaagataggtaaacaccctttttcatacacttcttatgtacactcccatgtattaggggtatttgagtaattttacatcatatcatcacccttttt 34108519  T
Q  278 catctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 349  Q
    ||||||||| ||||||||||||| ||  |||||||||| |||||||||||||||||||||||| ||||||||    
T  34108518 catctcttcattcaatgtttttgtcatatgtcacaaatatgtgtgggtgtaaaagggtgtatgtcacctaag 34108447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 179 - 341
Target Start/End: Complemental strand, 34828256 - 34828094
Alignment:
Q  179 ggaaaaagataggtaaacaccctttttcatgcatctcttgtgtacatccaatgtgttaggggtattttagtaattttatattatatcatcaccccttttc 278  Q
    ||||||||||||||| ||| |||||||||| || | ||| || ||| || || ||||||||||||||||||||||||| || ||||||||| | ||||||    
T  34828256 ggaaaaagataggtagacatcctttttcatacaccacttatgcacaccccatatgttaggggtattttagtaattttacatcatatcatcatcacttttc 34828157  T
Q  279 atctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgc 341  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  34828156 atctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtggatgtaaaaggatgtatgc 34828094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 179 - 347
Target Start/End: Original strand, 5811163 - 5811331
Alignment:
Q  179 ggaaaaagataggtaaacaccctttttcatgcatctcttgtgtacatccaatgtgttaggggtattttagtaattttatattatatcatcaccccttttc 278  Q
    ||||||||||||||| ||||||||||| || || |||   |||||| |  |||||||||||||||||||||||||| | || | ||| ||||||||||||    
T  5811163 ggaaaaagataggtagacacccttttttatacacctcccatgtacacctcatgtgttaggggtattttagtaatttcacatcacatcctcaccccttttc 5811262  T
Q  279 atctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccaccta 347  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||    
T  5811263 atctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgaaaaaggatgtatgccaccta 5811331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 179 - 349
Target Start/End: Original strand, 42220963 - 42221133
Alignment:
Q  179 ggaaaaagataggtaaacaccctttttcatgcatctcttgtgtacatccaatgtgttaggggtatttt-agtaattttatattatatcatcacccctttt 277  Q
    ||||||||||||||| ||||| |||||||| || | ||| ||||||  | |||||||||||||||||| |||||||| | || |||||||||||||||||    
T  42220963 ggaaaaagataggtagacacc-tttttcatacaccacttatgtacactccatgtgttaggggtatttttagtaatttaacatcatatcatcacccctttt 42221061  T
Q  278 catctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 349  Q
     || ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  42221062 tatatcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaaaagtgtatgccacctaag 42221133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 179 - 347
Target Start/End: Complemental strand, 23980322 - 23980154
Alignment:
Q  179 ggaaaaagataggtaaacaccctttttcatgcatctcttgtgtacatccaatgtgttaggggtattttagtaattttatattatatcatcaccccttttc 278  Q
    ||||||||||||||| ||| ||||||| || ||| |    ||||||||  || |||||| |||||||||||||||| | || | ||| ||||||||||||    
T  23980322 ggaaaaagataggtagacatccttttttatacattttccatgtacatctcatatgttagaggtattttagtaatttcacatcacatcctcaccccttttc 23980223  T
Q  279 atctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccaccta 347  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  23980222 atctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccaccta 23980154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 179 - 349
Target Start/End: Complemental strand, 13108338 - 13108169
Alignment:
Q  179 ggaaaaagataggtaaacaccctttttcatgcatctcttgtgtacatccaatgtgttaggggtattttagtaattttatattatatcatcaccccttttc 278  Q
    ||||||||||||||| ||||||||||| || || || |  |||||| |  |||||||||||||||||||||||||| | || | ||| |||||||||| |    
T  13108338 ggaaaaagataggtagacacccttttttatacacctttcatgtacacctcatgtgttaggggtattttagtaatttcacatcacatcctcaccccttt-c 13108240  T
Q  279 atctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 349  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  13108239 atctcttctttcaacgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccgcctaag 13108169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 181 - 349
Target Start/End: Complemental strand, 30887890 - 30887721
Alignment:
Q  181 aaaaagataggtaa-acaccctttttcatgcatctcttgtgtacatccaatgtgttaggggtattttagtaattttatattatatcatcaccccttttca 279  Q
    ||||||||| |||| |||||||||||||| ||  |||| | |||| || |||| |||| ||||||| |||||||||| || |||||||||||| ||||||    
T  30887890 aaaaagatacgtaagacaccctttttcatacacttcttatatacaccccatgtattagaggtatttaagtaattttacatcatatcatcaccctttttca 30887791  T
Q  280 tctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 349  Q
    ||||||| |||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||    
T  30887790 tctcttcattcaatgtttttgctacgtgtcacaaatgtatgtgggtgtaaaagtgtgtatgccacctaag 30887721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 179 - 328
Target Start/End: Complemental strand, 46475216 - 46475066
Alignment:
Q  179 ggaaaaagataggtaaacaccctttttcatgcatctcttgtgtacatccaatgtgtta-ggggtattttagtaattttatattatatcatcacccctttt 277  Q
    ||||||||||||||| ||||||||||| || || ||||  ||||||||  |||||||| |||||||||||||||||| | || | ||| |||||||||||    
T  46475216 ggaaaaagataggtagacacccttttttatacacctctcatgtacatctcatgtgttatggggtattttagtaatttcacatcacatcgtcacccctttt 46475117  T
Q  278 catctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgta 328  Q
    |||||||||||||||||||||||  || |||||||||||||| ||||||||    
T  46475116 catctcttctttcaatgtttttgttacatgtcacaaatgtgtatgggtgta 46475066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 229 - 349
Target Start/End: Complemental strand, 36957570 - 36957450
Alignment:
Q  229 atgtgttaggggtattttagtaattttatattatatcatcaccccttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgta 328  Q
    ||||||| |||||||||||||||||||| |||| || |||| || ||||||||||||||| |||| |||||| |||||||||||||| ||| ||| ||||    
T  36957570 atgtgttgggggtattttagtaattttacattacattatcatccattttcatctcttcttacaatatttttgtcacgtgtcacaaatatgtatggatgta 36957471  T
Q  329 aaagggtgtatgccacctaag 349  Q
    |||||||||||||||||||||    
T  36957470 aaagggtgtatgccacctaag 36957450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 231 - 349
Target Start/End: Original strand, 21807374 - 21807492
Alignment:
Q  231 gtgttaggggtattttagtaattttatattatatcatcaccccttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaa 330  Q
    |||||||||||||||||||||||| | || | ||||||| || |||||||||||||||||||| |||||||||| | |||||||| ||||||||||||||    
T  21807374 gtgttaggggtattttagtaatttcacataacatcatcatccattttcatctcttctttcaatatttttgccacatatcacaaatttgtgtgggtgtaaa 21807473  T
Q  331 agggtgtatgccacctaag 349  Q
    | ||||||||||| |||||    
T  21807474 atggtgtatgccatctaag 21807492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 229 - 347
Target Start/End: Complemental strand, 15020420 - 15020305
Alignment:
Q  229 atgtgttaggggtattttagtaattttatattatatcatcaccccttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgta 328  Q
    ||||||||||| |||||||||||||| | || ||||| |||||||||| | ||||||||||||||||||||||||  |||||||||||  ||||||||||    
T  15020420 atgtgttagggatattttagtaatttcacatcatatcttcaccccttt-cgtctcttctttcaatgtttttgccatatgtcacaaatg--tgtgggtgta 15020324  T
Q  329 aaagggtgtatgccaccta 347  Q
    ||||| |||||||||||||    
T  15020323 aaaggttgtatgccaccta 15020305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 241 - 335
Target Start/End: Original strand, 20086690 - 20086784
Alignment:
Q  241 tattttagtaattttatattatatcatcaccccttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggt 335  Q
    |||||||||||||| | || | ||||||||||||||| ||||||||||| |||||||||||||  |||| ||||||| |||||||||||||||||    
T  20086690 tattttagtaatttcacatcacatcatcacccctttttatctcttcttttaatgtttttgccagatgtctcaaatgtatgtgggtgtaaaagggt 20086784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 236 - 349
Target Start/End: Complemental strand, 38321143 - 38321030
Alignment:
Q  236 aggggtattttagtaattttatattatatcatcaccccttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggt 335  Q
    |||| |||||||||| ||| | || | | ||||||| | | |||| ||||||||||||||||||||||| |||||||| ||| ||||||||| |||  ||    
T  38321143 agggatattttagtactttcacatcacaccatcacctcctctcatatcttctttcaatgtttttgccacatgtcacaattgtatgtgggtgttaaaatgt 38321044  T
Q  336 gtatgccacctaag 349  Q
    ||||||||||||||    
T  38321043 gtatgccacctaag 38321030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 275 - 328
Target Start/End: Original strand, 42950109 - 42950162
Alignment:
Q  275 tttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgta 328  Q
    ||||||||||| ||||||||| |||||||| | |||||||||||||||||||||    
T  42950109 tttcatctcttttttcaatgtatttgccacatatcacaaatgtgtgtgggtgta 42950162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 272
Target Start/End: Original strand, 29953571 - 29953665
Alignment:
Q  179 ggaaaaagataggtaaacaccctttttcatgcatctcttgtgtaca-tccaatgtgttaggggtattttagtaattttatattatatcatcaccc 272  Q
    ||||||||||||||| |||||||||||||| ||  |||| |||| | | | |||| |||||| ||||| |||||||||| || ||||||||||||    
T  29953571 ggaaaaagataggtagacaccctttttcatacacttcttatgtagacttccatgtattagggatatttgagtaattttacatcatatcatcaccc 29953665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 305 - 336
Target Start/End: Complemental strand, 29953692 - 29953661
Alignment:
Q  305 gtgtcacaaatgtgtgtgggtgtaaaagggtg 336  Q
    ||||||||||||||||||||||||||||||||    
T  29953692 gtgtcacaaatgtgtgtgggtgtaaaagggtg 29953661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 115; Significance: 2e-58; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 179 - 349
Target Start/End: Complemental strand, 30432530 - 30432360
Alignment:
Q  179 ggaaaaagataggtaaacaccctttttcatgcatctcttgtgtacatccaatgtgttaggggtattttagtaattttatattatatcatcaccccttttc 278  Q
    |||||||||| | || |||||||||||||| || ||||| ||||||||| || | ||| ||||||||||||||||||| || ||||||||||||||||||    
T  30432530 ggaaaaagattgatagacaccctttttcatacacctcttatgtacatcccatatattatgggtattttagtaattttacatcatatcatcaccccttttc 30432431  T
Q  279 atctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 349  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  30432430 atctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtataaaagggtgtatgccatctaag 30432360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 179 - 349
Target Start/End: Complemental strand, 36189406 - 36189237
Alignment:
Q  179 ggaaaaagataggtaaacaccctttttcatgcatctcttgtgtacatccaatgtgttaggggtattttagtaattttatattatatcatcaccccttttc 278  Q
    ||||||||||||||| |||||||||||||| || | ||| |||||| ||| | |||||||||||||||| ||||||||||| |||||||||| |||||||    
T  36189406 ggaaaaagataggtagacaccctttttcatacaccacttatgtacaccca-tatgttaggggtattttaataattttatatcatatcatcactccttttc 36189308  T
Q  279 atctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 349  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  36189307 atctcttctttcaatatttttgccacgtgtcacaaatgtatgtgggtgtaaaagggtgtatgccacctaag 36189237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 177 - 349
Target Start/End: Complemental strand, 10203858 - 10203685
Alignment:
Q  177 atggaaaaagataggtaaacaccctttttcatgcatctcttgtgtacatcca-atgtgttaggggtattttagtaattttatattatatcatcacccctt 275  Q
    ||||||||||||||||| |||||||||||||| |||||||| |||||| ||  |||| |||||| ||||||||||||||||||| |||||| ||||| ||    
T  10203858 atggaaaaagataggtagacaccctttttcatacatctcttatgtacaccctcatgtattagggatattttagtaattttatatcatatcaccacccttt 10203759  T
Q  276 ttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 349  Q
    |||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||| |||||| ||||||||    
T  10203758 ttcatctcttctttcaatatttttgtcacgtgtcacaaatgtgtgtggatgtaaaaggatgtatgtcacctaag 10203685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 187 - 349
Target Start/End: Complemental strand, 44081964 - 44081801
Alignment:
Q  187 ataggtaaacaccctttttcatgcatctcttgtgtacatcca-atgtgttaggggtattttagtaattttatattatatcatcaccccttttcatctctt 285  Q
    ||||||| |||||||||||||| ||  |||| |||||| ||  |||| |||||||||||| |||||||||| ||||||||||||||| ||||||||||||    
T  44081964 ataggtagacaccctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtaattttacattatatcatcaccctttttcatctctt 44081865  T
Q  286 ctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 349  Q
    |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  44081864 ctttcaatgttttttccacgtgttacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 44081801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 179 - 349
Target Start/End: Complemental strand, 18184744 - 18184574
Alignment:
Q  179 ggaaaaagataggtaaacaccctttttcatgcatctcttgtgtacatccaatgtgttaggggtattttagtaattttatattatatcatcaccccttttc 278  Q
    ||||||||||||||| ||| |||||||||| || || || |||||| |  ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  18184744 ggaaaaagataggtagacatcctttttcatacaccttttatgtacacctcatgtgttaggggtattttagtaattttatatcatatcatcaccccttttc 18184645  T
Q  279 atctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 349  Q
    |||||||| |||||||||||  ||||||||||||||| ||||||| |||||||||||||||| ||| ||||    
T  18184644 atctcttcattcaatgttttcaccacgtgtcacaaatatgtgtggatgtaaaagggtgtatgtcacttaag 18184574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 179 - 349
Target Start/End: Complemental strand, 42162790 - 42162619
Alignment:
Q  179 ggaaaaagataggtaaacaccctttttcatgcatctcttgtgtacatcca-atgtgttaggggtattttagtaattttatattatatcatcacccctttt 277  Q
    ||||||||||||||| |||| ||||||||| ||  | || |||||| ||  |||| |||||||||||| |||||||||| || |||||||||||| ||||    
T  42162790 ggaaaaagataggtagacactctttttcatacactttttatgtacacccccatgtattaggggtatttgagtaattttacatcatatcatcacccttttt 42162691  T
Q  278 catctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 349  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||||    
T  42162690 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtttgggtgtaaaagggtgtatgacacctaag 42162619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 179 - 349
Target Start/End: Complemental strand, 12665537 - 12665365
Alignment:
Q  179 ggaaaaagataggtaaacaccctttttcatgcatctcttgtgtacatcca-atgtgttaggggtattttagtaattttatattatatcatcacccctttt 277  Q
    ||||||||||||||| ||| |||||||| | || ||||| |||| | ||  |||||||||||||||||||||||||||| || |||||||||||| ||||    
T  12665537 ggaaaaagataggtagacatcctttttcgtacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatcatatcatcacccttttt 12665438  T
Q  278 c-atctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 349  Q
      |||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||    
T  12665437 ttatctcttctttcaatgtttttgccacatgttacaaatgtgtgtgagtgtaaaagggtgtatgccacctaag 12665365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 170 - 348
Target Start/End: Complemental strand, 33726212 - 33726033
Alignment:
Q  170 ttttaacatggaaaaagataggtaaacaccctttttcatgcatctcttgtgtacatccaatgtgttaggggtattttagtaattttatattatatcatca 269  Q
    |||||| ||||||||||||||||| ||||||||||| || || |||   ||||||    |||||||||||||||||||||||||| | || | ||| |||    
T  33726212 ttttaaaatggaaaaagataggtagacacccttttttatacacctcccatgtacacttcatgtgttaggggtattttagtaatttcacatcacatcgtca 33726113  T
Q  270 ccc-cttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaa 348  Q
     || |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||    
T  33726112 tccacttttcatctcttctttcaatgtttttgccacatgtcacaaatgtttgtgggtgtaaaaaggtgtatgccacctaa 33726033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 179 - 349
Target Start/End: Complemental strand, 31318997 - 31318826
Alignment:
Q  179 ggaaaaagataggtaaacaccctttttcatgcatctcttgtgtacatcca-atgtgttaggggtattttagtaattttatattatatcatcacccctttt 277  Q
    ||||||||||||||| ||| | |||||||| ||  |||| | |||| ||  |||| ||||| |||||| |||||||||| || |||||||||||| ||||    
T  31318997 ggaaaaagataggtagacatcatttttcatacacttcttatatacacccccatgtattaggagtatttgagtaattttacatcatatcatcacccttttt 31318898  T
Q  278 catctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 349  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||| | | |||||||||||||    
T  31318897 catctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtggatgtaaaaagttatatgccacctaag 31318826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 179 - 348
Target Start/End: Complemental strand, 43186218 - 43186049
Alignment:
Q  179 ggaaaaagataggtaaacaccctttttcatgcatctcttgtgtacatccaatgtgttaggggtattttagtaattttatattatatcatcaccccttttc 278  Q
    ||||||||||||||| ||| | |||||||| ||  |||| |||||| || |||| ||||||| |||| ||||||||||||| |||||||||||  |||||    
T  43186218 ggaaaaagataggtagacatcatttttcatacacttcttatgtacaccctatgtattaggggcatttgagtaattttatatcatatcatcaccttttttc 43186119  T
Q  279 atctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaa 348  Q
    |||| ||||||||||||||||||||| | |||||||||||||  |||||||||| || ||||||||||||    
T  43186118 atcttttctttcaatgtttttgccacatatcacaaatgtgtgcaggtgtaaaagagtatatgccacctaa 43186049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 235 - 349
Target Start/End: Original strand, 42668838 - 42668951
Alignment:
Q  235 taggggtattttagtaattttatattatatcatcaccccttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaaggg 334  Q
    |||||||||| ||||||||| | || ||| ||||||| || | ||| |||||||| ||||||||||||||||||||||| ||||||||||||| |||| |    
T  42668838 taggggtattgtagtaatttcacatcataccatcacctctct-catatcttcttttaatgtttttgccacgtgtcacaattgtgtgtgggtgtcaaagtg 42668936  T
Q  335 tgtatgccacctaag 349  Q
    |||||||||||||||    
T  42668937 tgtatgccacctaag 42668951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 279 - 349
Target Start/End: Original strand, 31547 - 31617
Alignment:
Q  279 atctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 349  Q
    |||||||||||||||||||||||||| |||||||| ||| ||||||||| |||| |||||||| |||||||    
T  31547 atctcttctttcaatgtttttgccacatgtcacaattgtatgtgggtgtcaaagtgtgtatgctacctaag 31617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 229 - 348
Target Start/End: Original strand, 35849502 - 35849623
Alignment:
Q  229 atgtgttaggggtattttagtaattttatattatatcatcaccccttttcatctcttctttca--atgtttttgccacgtgtcacaaatgtgtgtgggtg 326  Q
    |||||| |||||  ||||| |||||| |||| | |||||| |||||| ||||||||||||| |  || ||||||||| ||||||||| |||||||  |||    
T  35849502 atgtgtcaggggggttttaataatttcatatcacatcatcgccccttctcatctcttcttttaatatttttttgccatgtgtcacaattgtgtgtaagtg 35849601  T
Q  327 taaaagggtgtatgccacctaa 348  Q
    | ||| | ||||||||||||||    
T  35849602 ttaaatgatgtatgccacctaa 35849623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 229 - 322
Target Start/End: Original strand, 38845073 - 38845165
Alignment:
Q  229 atgtgttaggggtattttagtaattttatattatatcatcaccccttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtg 322  Q
    ||||||||||| ||||||||||||||   || | |||||||||||| || |||| |||||||||| ||||| |||| |||||||| ||||||||    
T  38845073 atgtgttagggttattttagtaatttctcatcacatcatcacccctctt-atcttttctttcaatattttttccacatgtcacaattgtgtgtg 38845165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 349
Target Start/End: Original strand, 3690686 - 3690772
Alignment:
Q  263 atcatcaccccttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 349  Q
    ||||||||| | | ||||||||||||| ||| |||| || || |||||||| ||||||||| | | ||||| |||||| ||||||||    
T  3690686 atcatcacctcatctcatctcttcttttaatattttcgctacatgtcacaagtgtgtgtggatatcaaaggatgtatgtcacctaag 3690772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 112; Significance: 1e-56; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 175 - 349
Target Start/End: Complemental strand, 39371123 - 39370948
Alignment:
Q  175 acatggaaaaagataggtaaacaccctttttcatgcatctcttgtgtacatcca-atgtgttaggggtattttagtaattttatattatatcatcacccc 273  Q
    ||||||||||||||||||| |||||||||||||| ||  |||| |||||| ||  |||| |||||||||||| |||||||||| || ||||||||||||     
T  39371123 acatggaaaaagataggtagacaccctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtaattttacatcatatcatcaccct 39371024  T
Q  274 ttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 349  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||    
T  39371023 ttttcatctcttctttcaatgtttttggcacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaag 39370948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 179 - 349
Target Start/End: Complemental strand, 14831736 - 14831565
Alignment:
Q  179 ggaaaaagataggtaaacaccctttttcatgcatctcttgtgtacatcca-atgtgttaggggtattttagtaattttatattatatcatcacccctttt 277  Q
    |||||||||||||||||||||||||||||| ||  |||| |||||| ||  | || |||||||||||| | |||||||| || |||||||||||| ||||    
T  14831736 ggaaaaagataggtaaacaccctttttcatacacttcttatgtacacccctacgtattaggggtatttgaataattttacatcatatcatcacccttttt 14831637  T
Q  278 catctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 349  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  14831636 catctcttctttcaatgtttttgccacgtatcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 14831565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 179 - 349
Target Start/End: Original strand, 40887941 - 40888112
Alignment:
Q  179 ggaaaaagataggtaaacaccctttttcatgcatctcttgtgtacatcca-atgtgttaggggtattttagtaattttatattatatcatcacccctttt 277  Q
    ||||||||||||||| |||||||||||||| || ||||| |||||| ||  || | |||| |||||||||||||||||| || |||||| ||||| ||||    
T  40887941 ggaaaaagataggtagacaccctttttcatacacctcttatgtacacccccatctattagaggtattttagtaattttacatcatatcaccacccttttt 40888040  T
Q  278 catctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 349  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  40888041 catctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagagtgtatgccacctaag 40888112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 179 - 333
Target Start/End: Complemental strand, 31800749 - 31800595
Alignment:
Q  179 ggaaaaagataggtaaacaccctttttcatgcatctcttgtgtacatccaatgtgttaggggtattttagtaattttatattatatcatcaccccttttc 278  Q
    ||||||||||||| | |||||||||||||| || |||||||||||| || || ||||||||||||||||||||||||| || ||||||||||||||||||    
T  31800749 ggaaaaagataggcagacaccctttttcatacacctcttgtgtacaccccatatgttaggggtattttagtaattttacatcatatcatcaccccttttc 31800650  T
Q  279 atctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagg 333  Q
    |||| |||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  31800649 atcttttctttcaatatttttgccacgtgtcataaatgtgtgtgggtgtaaaagg 31800595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 177 - 349
Target Start/End: Complemental strand, 2237470 - 2237297
Alignment:
Q  177 atggaaaaagataggtaaacaccctttttcatgcatctcttgtgtacatcca-atgtgttaggggtattttagtaattttatattatatcatcacccctt 275  Q
    ||||||||||||||||| |||||||||||||| ||  |||| |||||| ||  | || |||||||||||| |||||||||| || |||||||||||| ||    
T  2237470 atggaaaaagataggtagacaccctttttcatacacttcttatgtacacccccaagtattaggggtatttgagtaattttacatcatatcatcacccttt 2237371  T
Q  276 ttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 349  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  2237370 ttcatctcttctttcaatgtttttgccacgtgtcacaaatatgtgtgggtgtaaaagggtgtatgtcacctaag 2237297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 179 - 349
Target Start/End: Complemental strand, 13347320 - 13347149
Alignment:
Q  179 ggaaaaagataggtaaacaccctttttcatgcatctcttgtgtacatcca-atgtgttaggggtattttagtaattttatattatatcatcacccctttt 277  Q
    ||||||||||||||| |||||||||||||| ||  |||| |||||| ||  |||| |||||||||||| ||||||| || || |||||||||| | ||||    
T  13347320 ggaaaaagataggtagacaccctttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcactcttttt 13347221  T
Q  278 catctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 349  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13347220 catctattctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 13347149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 219 - 349
Target Start/End: Original strand, 1815656 - 1815786
Alignment:
Q  219 tgtacatccaatgtgttaggggtattttagtaattttatattatatcatcaccccttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtg 318  Q
    |||||| || |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  1815656 tgtacaccctatgtgttaggggtattttagtaattttacatcatatcatcaccccttttcatctcttctttcaatgtttttgccacgtgtcacaaatatg 1815755  T
Q  319 tgtgggtgtaaaagggtgtatgccacctaag 349  Q
    ||||| |||||||||||||||| ||||||||    
T  1815756 tgtggatgtaaaagggtgtatgtcacctaag 1815786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 182 - 348
Target Start/End: Original strand, 27553376 - 27553542
Alignment:
Q  182 aaaagataggtaaacaccctttttcatgcatctcttgtgtacatccaatgtgttaggggtattttagtaattttatattatatcatcaccccttttcatc 281  Q
    |||| |||| || |||||||||||||| || ||||| |||||| || |||||||||| ||||||||||||||||| || | || ||||||  ||||| ||    
T  27553376 aaaaaatagatagacaccctttttcatacacctcttatgtacaccctatgtgttaggagtattttagtaattttacatcagataatcaccatttttcttc 27553475  T
Q  282 tcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaa 348  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  27553476 tcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaatggtatatgccacctaa 27553542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 234 - 346
Target Start/End: Original strand, 9408094 - 9408206
Alignment:
Q  234 ttaggggtattttagtaattttatattatatcatcaccccttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagg 333  Q
    |||||||||||| |||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  9408094 ttaggggtatttgagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgagtgtaaaagg 9408193  T
Q  334 gtgtatgccacct 346  Q
    | ||||| |||||    
T  9408194 gcgtatgtcacct 9408206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 236 - 348
Target Start/End: Complemental strand, 17225451 - 17225341
Alignment:
Q  236 aggggtattttagtaattttatattatatcatcaccccttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggt 335  Q
    ||||||||||||||||||| | || | ||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||  |     
T  17225451 aggggtattttagtaatttcacatcacatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtgggtgtaaaa--ga 17225354  T
Q  336 gtatgccacctaa 348  Q
    |||||||||||||    
T  17225353 gtatgccacctaa 17225341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 274 - 349
Target Start/End: Original strand, 33404531 - 33404606
Alignment:
Q  274 ttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 349  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  33404531 ttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagtgtgtatggcacctaag 33404606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 213 - 349
Target Start/End: Original strand, 19596102 - 19596237
Alignment:
Q  213 ctcttgtgtacatccaatgtgttaggggtattttagtaattttatattatatcatcaccccttttcatctcttctttcaatgtttttgccacgtgtcaca 312  Q
    ||||| |||||| || |||||| ||||||| |||||| |||| | |||| || |||||   |||||| |||||||||||||||||||||||| |||||||    
T  19596102 ctcttatgtacaccccatgtgtcaggggtagtttagtcatttcacattacattatcacta-ttttcacctcttctttcaatgtttttgccacatgtcaca 19596200  T
Q  313 aatgtgtgtgggtgtaaaagggtgtatgccacctaag 349  Q
    |||||| |||| ||||||| |||||||||||||||||    
T  19596201 aatgtgcgtggatgtaaaaaggtgtatgccacctaag 19596237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 180 - 348
Target Start/End: Original strand, 4300544 - 4300712
Alignment:
Q  180 gaaaaagataggtaaacaccctttttcatgcatctcttgtgtacatccaatgtgttaggggtattttagtaattttatattatatcatcaccccttttca 279  Q
    ||||||||| | || ||| ||||||| || |||||||  |||||| |  ||||||||||| ||||||| |||||| | || | |||| ||||  |||| |    
T  4300544 gaaaaagattgatagacatccttttttatacatctctcatgtacacctcatgtgttagggatattttaataatttcacatcacatcaccaccatttttta 4300643  T
Q  280 tctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaa 348  Q
    |||||| |||||||||||||||||  |||||||||| ||||||||||||||||| | |||| |||||||    
T  4300644 tctcttatttcaatgtttttgccatatgtcacaaatatgtgtgggtgtaaaaggatatatgtcacctaa 4300712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 179 - 299
Target Start/End: Complemental strand, 42683791 - 42683670
Alignment:
Q  179 ggaaaaagataggtaaacaccctttttcatgcatctcttgtgtacatcca-atgtgttaggggtattttagtaattttatattatatcatcacccctttt 277  Q
    |||||||||||| || ||| |||||||||| || ||||| |||||| ||  || | ||||||||||||||||||||||| || |||||| || || ||||    
T  42683791 ggaaaaagatagatagacatcctttttcatacacctcttatgtacacccccatatattaggggtattttagtaattttacatcatatcaccatccttttt 42683692  T
Q  278 catctcttctttcaatgttttt 299  Q
    ||||||||||||||||||||||    
T  42683691 catctcttctttcaatgttttt 42683670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 244 - 348
Target Start/End: Original strand, 41003915 - 41004018
Alignment:
Q  244 tttagtaattttatattatatcatcaccccttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgcca 343  Q
    ||||||||||||| || | ||||||| ||||||| || |||| ||||||| |||||||||| ||||| |||||||| || ||||||||||||||||||||    
T  41003915 tttagtaattttacatcacatcatcatccctttttatatctt-tttcaatatttttgccacatgtcataaatgtgtatgagtgtaaaagggtgtatgcca 41004013  T
Q  344 cctaa 348  Q
    |||||    
T  41004014 cctaa 41004018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 239 - 349
Target Start/End: Original strand, 19124532 - 19124640
Alignment:
Q  239 ggtattttagtaattttatattatatcatcaccccttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgta 338  Q
    |||||||||||||||||| || ||||||||||    ||||||||||||||| ||||||||||||||  ||||||| ||||||||||||| |||  |||||    
T  19124532 ggtattttagtaattttacatcatatcatcacattctttcatctcttcttt-aatgtttttgccacacgtcacaattgtgtgtgggtgtcaaa-tgtgta 19124629  T
Q  339 tgccacctaag 349  Q
    ||||| |||||    
T  19124630 tgccatctaag 19124640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 282 - 349
Target Start/End: Complemental strand, 12164339 - 12164272
Alignment:
Q  282 tcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 349  Q
    ||||||||||||||||||||||| || ||||| |||||||| || | ||||  ||| |||||||||||    
T  12164339 tcttctttcaatgtttttgccacatgccacaactgtgtgtgagtattaaagaatgtgtgccacctaag 12164272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 112; Significance: 1e-56; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 179 - 349
Target Start/End: Complemental strand, 21559753 - 21559582
Alignment:
Q  179 ggaaaaagataggtaaacaccctttttcatgcatctcttgtgtacatcca-atgtgttaggggtattttagtaattttatattatatcatcacccctttt 277  Q
    |||||||||||| || ||||| |||||||| || ||||| |||||| ||  |||||||||||||||||||||||||||| || ||||||| |||| ||||    
T  21559753 ggaaaaagatagatagacaccatttttcatacacctcttatgtacacccccatgtgttaggggtattttagtaattttacatcatatcattacccttttt 21559654  T
Q  278 catctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 349  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21559653 catctcttctttcaatatttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 21559582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 179 - 349
Target Start/End: Original strand, 51339783 - 51339951
Alignment:
Q  179 ggaaaaagataggtaaacaccctttttcatgcatctcttgtgtacatccaatgtgttaggggtattttagtaattttatattatatcatcaccccttttc 278  Q
    ||||||||||||||| |||||||||||||| || ||||| ||||||    ||||||||| |||||||||||||||||| || |||||||||||| |||||    
T  51339783 ggaaaaagataggtagacaccctttttcatacacctcttatgtacacatcatgtgttagaggtattttagtaattttacatcatatcatcaccctttttc 51339882  T
Q  279 atctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 349  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||    
T  51339883 atctcttctttcaatgtttttgccacgtgtcacaaa--tgtgtgggtgtaaaaggatgtatgccacctaag 51339951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 177 - 349
Target Start/End: Original strand, 46111941 - 46112114
Alignment:
Q  177 atggaaaaagataggtaaacaccctttttcatgcatctcttgtgtacatcca-atgtgttaggggtattttagtaattttatattatatcatcacccctt 275  Q
    ||||||||||||||||| ||||| |||||||| || || || | |||||||  |||| ||||||||||||||||||||||| || |||||||||||| ||    
T  46111941 atggaaaaagataggtagacaccatttttcatacaccttttatatacatccccatgtattaggggtattttagtaattttacatcatatcatcacccttt 46112040  T
Q  276 ttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 349  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||| ||||||||    
T  46112041 ttcatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaag 46112114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 179 - 349
Target Start/End: Original strand, 34749897 - 34750068
Alignment:
Q  179 ggaaaaagataggtaaacaccctttttcatgcatctcttgtgtacatcca-atgtgttaggggtattttagtaattttatattatatcatcacccctttt 277  Q
    ||||||||||||  | ||| |||||||||| ||  |||| |||||| ||  |||| |||||||||||| |||||||||| || |||||||||||| ||||    
T  34749897 ggaaaaagatagccagacatcctttttcatacacttcttatgtacacccctatgtattaggggtatttgagtaattttacatcatatcatcacccttttt 34749996  T
Q  278 catctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 349  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  34749997 catctcttctttcaatgtttttgccacgtgtcacaaatatgtgtgggtgtaaaagggtgtatgccacctaag 34750068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 179 - 349
Target Start/End: Original strand, 30735495 - 30735665
Alignment:
Q  179 ggaaaaagataggtaaacaccctttttcatgcatctcttgtgtacatccaatgtgttaggggtatttt-agtaattttatattatatcatcacccctttt 277  Q
    ||||||||||||||| |||||||||||||| || | ||| ||||||  | |||||||||||||||||| |||||||| | || |||||||||||| ||||    
T  30735495 ggaaaaagataggtagacaccctttttcatacaccacttatgtacactccatgtgttaggggtatttttagtaatttaacatcatatcatcacccttttt 30735594  T
Q  278 catctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 349  Q
     || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  30735595 -atatcttctttcaatgtttttgccacgtgtcacagatgtgtgtgggtgtaaaagggtgtatgccatctaag 30735665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 180 - 349
Target Start/End: Complemental strand, 22894870 - 22894701
Alignment:
Q  180 gaaaaagataggtaaacaccctttttcatgcatctcttgtgtacatcca-atgtgttaggggtattttagtaattttatattatatcatcaccccttttc 278  Q
    ||||||||||| || |||||||||| ||| ||  |||| |||||| ||  |||| |||||||||||| ||||||| || || ||||||||| || |||||    
T  22894870 gaaaaagatagatagacaccctttt-catacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttc 22894772  T
Q  279 atctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 349  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22894771 atctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 22894701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 179 - 349
Target Start/End: Complemental strand, 44000181 - 44000010
Alignment:
Q  179 ggaaaaagataggtaaacaccctttttcatgcatctcttgtgtacatcca-atgtgttaggggtattttagtaattttatattatatcatcacccctttt 277  Q
    ||||||||||||||| |||| ||||||||| ||  | || |||||  ||  |||| |||| ||||||| |||||||||| || |||||||||||| ||||    
T  44000181 ggaaaaagataggtagacactctttttcatacactttttatgtacgccctcatgtattagaggtatttgagtaattttacatcatatcatcacccttttt 44000082  T
Q  278 catctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 349  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  44000081 catctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgacacctaag 44000010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 181 - 349
Target Start/End: Complemental strand, 36749596 - 36749427
Alignment:
Q  181 aaaaagataggtaaacaccctttttcatgcatctcttgtgtacatcca-atgtgttaggggtattttagtaattttatattatatcatcaccccttttca 279  Q
    ||||||||||||| |||| ||||||||| ||  | || |||||| ||  |||| |||| ||||||| |||||||||| || |||||||||||| ||||||    
T  36749596 aaaaagataggtagacactctttttcatacactttttatgtacaccctcatgtattagaggtatttgagtaattttacatcatatcatcaccctttttca 36749497  T
Q  280 tctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 349  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||    
T  36749496 tctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgacatctaag 36749427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 229 - 349
Target Start/End: Original strand, 36370388 - 36370508
Alignment:
Q  229 atgtgttaggggtattttagtaattttatattatatcatcaccccttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgta 328  Q
    |||| |||||||||||| |||||||||| || |||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  36370388 atgtattaggggtatttgagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtgggtgta 36370487  T
Q  329 aaagggtgtatgccacctaag 349  Q
    ||| |||||||| ||||||||    
T  36370488 aaaaggtgtatgacacctaag 36370508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 177 - 349
Target Start/End: Complemental strand, 38231486 - 38231314
Alignment:
Q  177 atggaaaaagataggtaaacaccctttttc-atgcatctcttgtgtacatccaatgtgttaggggtattttagtaattttatattatatcatcacccctt 275  Q
    ||||||||||||||||| ||| |||||||  || || ||||| |||||| || |||||| ||||||| |||||| |||| | |||| || || |||  ||    
T  38231486 atggaaaaagataggtagacatccttttttgatacacctcttatgtacaccccatgtgtcaggggtagtttagtcatttcacattacattattacca-tt 38231388  T
Q  276 ttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 349  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  38231387 ttcatatcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 38231314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 179 - 340
Target Start/End: Original strand, 39467101 - 39467262
Alignment:
Q  179 ggaaaaagataggtaaacaccctttttcatgcatctcttgtgtacatccaatgtgttaggggtattttagtaattttatattatatcatcaccccttttc 278  Q
    ||||||||||||||| ||||||||||| || || |||   |||||| |  |||||||| || |||||||||||||| |||| | ||| ||||||||||||    
T  39467101 ggaaaaagataggtacacacccttttttatacacctcccatgtacacctcatgtgttatggatattttagtaatttcatatcacatcctcaccccttttc 39467200  T
Q  279 atctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatg 340  Q
    ||||||||||||||| |||||| ||| |||||||||| ||||||||||||||||||||||||    
T  39467201 atctcttctttcaatatttttggcacatgtcacaaatatgtgtgggtgtaaaagggtgtatg 39467262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 179 - 349
Target Start/End: Complemental strand, 48200877 - 48200706
Alignment:
Q  179 ggaaaaagataggtaaacaccctttttcatgcatctcttgtgtacatcca-atgtgttaggggtattttagtaattttatattatatcatcacccctttt 277  Q
    ||||||||||||||| ||| |||||||||| ||  | || |||||| ||  |||| ||| |||||||| |||||||||| || ||||||||| || ||||    
T  48200877 ggaaaaagataggtagacatcctttttcatacactttttatgtacacccccatgtattatgggtatttgagtaattttacatcatatcatcatccttttt 48200778  T
Q  278 catctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 349  Q
    |||||||||||||||| ||||||||||||||||||||| | ||||| ||||||| |||||||||||||||||    
T  48200777 catctcttctttcaatatttttgccacgtgtcacaaatatatgtggatgtaaaaaggtgtatgccacctaag 48200706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 177 - 349
Target Start/End: Original strand, 39072276 - 39072443
Alignment:
Q  177 atggaaaaagataggtaaacaccctttttcatgcatctcttgtgtacatccaatgtgttaggggtattttagtaattttatattatatcatcaccccttt 276  Q
    ||||||||||||||||| |||| |||||| || ||||| |  |||||| || |||||| | ||||||||||||||      || | |||||||||| |||    
T  39072276 atggaaaaagataggtagacacacttttttatacatctttgatgtacaccccatgtgtcaagggtattttagtaac-----atcacatcatcacccattt 39072370  T
Q  277 tcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 349  Q
    ||||||||||||| ||||||| |||||| |||||||||||| |||||||||||||||||||||| || |||||    
T  39072371 tcatctcttcttttaatgtttatgccacatgtcacaaatgtatgtgggtgtaaaagggtgtatgtcatctaag 39072443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 274 - 349
Target Start/End: Complemental strand, 29460756 - 29460681
Alignment:
Q  274 ttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 349  Q
    ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  29460756 ttttcatctcttctttcaatgtttttgccacatgtcacaaaagtgtgtgggtgtaaaagggtgtatgccacctaag 29460681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 274 - 349
Target Start/End: Complemental strand, 29471608 - 29471533
Alignment:
Q  274 ttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 349  Q
    ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  29471608 ttttcatctcttctttcaatgtttttgccacatgtcacaaaagtgtgtgggtgtaaaagggtgtatgccacctaag 29471533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 219 - 348
Target Start/End: Original strand, 20856194 - 20856320
Alignment:
Q  219 tgtacatccaatgtgttaggggtattttagtaattttatattatatcatcaccccttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtg 318  Q
    |||||| || |||||| |||||||||| ||||||||||||| | ||||||| || |||| || |||| |||||||||||||||||| |||||||||||||    
T  20856194 tgtacaccccatgtgtcaggggtattt-agtaattttatatcacatcatcatccttttt-atatctt-tttcaatgtttttgccacatgtcacaaatgtg 20856290  T
Q  319 tgtgggtgtaaaagggtgtatgccacctaa 348  Q
    | ||||||||||||||||||||||||||||    
T  20856291 tatgggtgtaaaagggtgtatgccacctaa 20856320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 236 - 348
Target Start/End: Complemental strand, 53638269 - 53638157
Alignment:
Q  236 aggggtattttagtaattttatattatatcatcaccccttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggt 335  Q
    ||||||||||||| ||||||| || | ||||||||||| | |||||||||||||| |||||||| |||| |||||| | ||||||||||||| |||||||    
T  53638269 aggggtattttagcaattttacatcacatcatcaccccctctcatctcttctttccatgtttttaccacatgtcacgattgtgtgtgggtgttaaagggt 53638170  T
Q  336 gtatgccacctaa 348  Q
    |||||||||||||    
T  53638169 gtatgccacctaa 53638157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 241 - 349
Target Start/End: Complemental strand, 50966256 - 50966151
Alignment:
Q  241 tattttagtaattttatattatatcatcaccccttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatg 340  Q
    |||||||||||||||| |||||||||||   | |||||||||||||||||||| |||||| |||||||||||||||||  | | ||||||||||||||||    
T  50966256 tattttagtaattttacattatatcatc---ctttttcatctcttctttcaatatttttgtcacgtgtcacaaatgtgaatagatgtaaaagggtgtatg 50966160  T
Q  341 ccacctaag 349  Q
    |||||||||    
T  50966159 ccacctaag 50966151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 241 - 349
Target Start/End: Complemental strand, 51069391 - 51069286
Alignment:
Q  241 tattttagtaattttatattatatcatcaccccttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatg 340  Q
    |||||||||||||||| |||||||||||   | |||||||||||||||||||| |||||| |||||||||||||||||  | | ||||||||||||||||    
T  51069391 tattttagtaattttacattatatcatc---ctttttcatctcttctttcaatatttttgtcacgtgtcacaaatgtgaatagatgtaaaagggtgtatg 51069295  T
Q  341 ccacctaag 349  Q
    |||||||||    
T  51069294 ccacctaag 51069286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 179 - 278
Target Start/End: Complemental strand, 29473000 - 29472901
Alignment:
Q  179 ggaaaaagataggtaaacaccctttttcatgcatctcttgtgtacatccaatgtgttaggggtattttagtaattttatattatatcatcaccccttttc 278  Q
    ||||||||||||||| ||| |||||||||| || | ||| || ||| || |||||||||||||||||||||||||||| || ||||||||| ||||||||    
T  29473000 ggaaaaagataggtagacatcctttttcatacaccacttatgcacaccccatgtgttaggggtattttagtaattttacatcatatcatcatcccttttc 29472901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 270 - 349
Target Start/End: Original strand, 29820390 - 29820469
Alignment:
Q  270 ccccttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 349  Q
    |||||| ||||||||||||| ||||||||||| || | |||||| ||| ||||||||| |||| ||||||||||||||||    
T  29820390 ccccttctcatctcttcttttaatgtttttgctacatctcacaattgtatgtgggtgtcaaagtgtgtatgccacctaag 29820469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 348
Target Start/End: Original strand, 5417684 - 5417752
Alignment:
Q  280 tctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaa 348  Q
    |||||||||| ||| |||||||||| ||| | || ||| |||| |||| |||| |||||||||||||||    
T  5417684 tctcttcttttaatatttttgccacatgttataattgtatgtgagtgtcaaagtgtgtatgccacctaa 5417752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 109; Significance: 9e-55; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 177 - 349
Target Start/End: Original strand, 21390953 - 21391125
Alignment:
Q  177 atggaaaaagataggtaaacaccctttttcatgcatctcttgtgtacatccaatgtgttaggggtattttagtaattttatattatatcatcaccccttt 276  Q
    ||||||||||||||||| |||||||||||||| || || || |||||| |  |||||||||||||||||||||||||||| || ||||  |||| | |||    
T  21390953 atggaaaaagataggtagacaccctttttcatacaccttttatgtacacctcatgtgttaggggtattttagtaattttacatcatatattcactcattt 21391052  T
Q  277 tcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 349  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  21391053 tcatctcttctttcaatatttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaag 21391125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 179 - 349
Target Start/End: Complemental strand, 44275897 - 44275727
Alignment:
Q  179 ggaaaaagataggtaaacaccctttttcatgcatctcttgtgtacatccaatgtgttaggggtattttagtaattttatattatatcatcaccccttttc 278  Q
    |||||||||||| || |||||||||||||| || ||||| |||||| || |||||||||||||||||||||||||||| || |||||||||||| ||||     
T  44275897 ggaaaaagatagatagacaccctttttcatacacctcttatgtacaccccatgtgttaggggtattttagtaattttacatcatatcatcacccttttta 44275798  T
Q  279 atctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 349  Q
    ||||||||||||||| |||||| ||||||||||||||||||||| |||||||| ||| |||||||||||||    
T  44275797 atctcttctttcaatatttttggcacgtgtcacaaatgtgtgtgagtgtaaaatggtatatgccacctaag 44275727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 179 - 349
Target Start/End: Complemental strand, 3672466 - 3672295
Alignment:
Q  179 ggaaaaagataggtaaacaccctttttcatgcatctcttgtgtacatcca-atgtgttaggggtattttagtaattttatattatatcatcacccctttt 277  Q
    ||||||||||||||| | |||||||||||| ||  |||| |||||| ||  |||| |||||||||||| ||||||| || || |||||||||||| ||||    
T  3672466 ggaaaaagataggtagataccctttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcacccttttt 3672367  T
Q  278 catctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 349  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  3672366 catctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtggatgtaaaagggtgtatgccacctaag 3672295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 179 - 349
Target Start/End: Complemental strand, 7217957 - 7217786
Alignment:
Q  179 ggaaaaagataggtaaacaccctttttcatgcatctcttgtgtacatcca-atgtgttaggggtattttagtaattttatattatatcatcacccctttt 277  Q
    |||||||||||||||||||||||||||||| || ||||| |||||| ||  ||||||||  |||||||||||||||||| || |||||||||||| ||||    
T  7217957 ggaaaaagataggtaaacaccctttttcatacacctcttatgtacaccctcatgtgttataggtattttagtaattttacatcatatcatcacccttttt 7217858  T
Q  278 catctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 349  Q
     ||||||| ||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  7217857 tatctcttattttaatgtttttgccacgtgtcacaaatgtgtgtaggtgttaaagggtgtatgccacctaag 7217786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 179 - 349
Target Start/End: Original strand, 28093095 - 28093266
Alignment:
Q  179 ggaaaaagataggtaaacaccctttttcatgcatctcttgtgtacatcca-atgtgttaggggtattttagtaattttatattatatcatcacccctttt 277  Q
    ||||||||||||||| ||| |||||||||| ||  |||| |||||| ||  |||| |||||||||||| |||| ||||| || |||||||||||| ||||    
T  28093095 ggaaaaagataggtagacatcctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtatttttacatcatatcatcacccttttt 28093194  T
Q  278 catctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 349  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28093195 catctctcctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 28093266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 179 - 349
Target Start/End: Complemental strand, 6112821 - 6112651
Alignment:
Q  179 ggaaaaagataggtaaacaccctttttcatgcatctcttgtgtacatccaatgtgttaggggtattttagtaattttatattatatcatcaccccttttc 278  Q
    ||||||||||||||| |||| ||||||||| ||  |||| ||||||  | |||| |||||||||||| |||||||||| || ||||||||| || |||||    
T  6112821 ggaaaaagataggtagacactctttttcatacacttcttatgtacactccatgtattaggggtatttgagtaattttacatcatatcatcatcctttttc 6112722  T
Q  279 atctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 349  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||    
T  6112721 atctcttctttcaatgtttttgccacgtgtcacaaatatgtgtgggtgtaaaatggtgtatgccatctaag 6112651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 179 - 349
Target Start/End: Complemental strand, 49244006 - 49243836
Alignment:
Q  179 ggaaaaagataggtaaacaccctttttcatgcatctcttgtgtacatccaatgtgttaggggtattttagtaattttatattatatcatcaccccttttc 278  Q
    ||||||||||| ||| ||| |||||||||| || ||||| ||||||  | |||| ||||||||||||||||||||||| || ||||||||||   ||||     
T  49244006 ggaaaaagatatgtagacatcctttttcatacacctcttatgtacactccatgtattaggggtattttagtaattttacatcatatcatcactttttttt 49243907  T
Q  279 atctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 349  Q
    |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||    
T  49243906 atctcttctttcaatgtttttgccacatgtcacaaatgtgtgtggatgtaaaagggtgtatgccacctaag 49243836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 181 - 349
Target Start/End: Complemental strand, 35545102 - 35544933
Alignment:
Q  181 aaaaagataggtaaacaccctttttcatgcatctcttgtgtacatccaatgtgttaggggtatttt-agtaattttatattatatcatcaccccttttca 279  Q
    ||||||||||||| |||||||||||||| || | ||| ||||||  | |||||||||||||||||| |||||||||| || ||||||||||||||||| |    
T  35545102 aaaaagataggtagacaccctttttcatacaccacttatgtacactccatgtgttaggggtatttttagtaattttacatcatatcatcaccccttttta 35545003  T
Q  280 tctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 349  Q
    | ||||||||||||||||||||||||| |||||||||| ||||| ||||||| ||||||| |||||||||    
T  35545002 tatcttctttcaatgtttttgccacgtatcacaaatgtatgtggatgtaaaatggtgtataccacctaag 35544933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 179 - 349
Target Start/End: Complemental strand, 46192551 - 46192380
Alignment:
Q  179 ggaaaaagataggtaaacaccctttttc-atgcatctcttgtgtacatccaatgtgttaggggtattttagtaattttatattatatcatcacccctttt 277  Q
    ||||||||||||||| |||||||||||  || || ||||| |||||| || ||||   |||||||||||| | |||| | || | || ||||||||||||    
T  46192551 ggaaaaagataggtagacacccttttttgatacacctcttatgtacaccccatgtaccaggggtattttaatcatttcacatcacattatcacccctttt 46192452  T
Q  278 catctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 349  Q
     |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  46192451 tatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 46192380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 179 - 348
Target Start/End: Original strand, 45829257 - 45829426
Alignment:
Q  179 ggaaaaagataggtaaacaccctttttc-atgcatctcttgtgtacatccaatgtgttaggggtattttagtaattttatattatatcatcacccctttt 277  Q
    ||||||||||||||| |||||||||||  || || || || |||||| || || ||  |||||||||||| | |||| | || | || ||||||||||||    
T  45829257 ggaaaaagataggtagacacccttttttgatacacct-ttatgtacaccccatatgccaggggtattttaatcatttcacatcacattatcacccctttt 45829355  T
Q  278 catctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaa 348  Q
     |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||    
T  45829356 tatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaaaggtgtatgtcacctaa 45829426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 174 - 349
Target Start/End: Complemental strand, 51038961 - 51038784
Alignment:
Q  174 aacatggaaaaagataggtaaacaccctttttcatgcatctcttgtgtacatcca-atgtgttaggggtattttagtaattttatattatatcatcaccc 272  Q
    |||||||||||||||||| | ||||| ||||||||| |  |||  |||||| ||  |||||  || | |||||||||||||| | || | | ||||||||    
T  51038961 aacatggaaaaagataggcagacaccttttttcatgtacatctcatgtacacccctatgtggcagagatattttagtaatttcacatcacaccatcaccc 51038862  T
Q  273 c-ttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 349  Q
    | ||||||||||||||||||||||||||| ||| |||||||| ||||||||||||| ||||  |||||||||||||||    
T  51038861 ccttttcatctcttctttcaatgtttttgtcacatgtcacaattgtgtgtgggtgtcaaagtttgtatgccacctaag 51038784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 177 - 349
Target Start/End: Original strand, 52191198 - 52191370
Alignment:
Q  177 atggaaaaagataggtaaacaccctttttcatgcatctcttgtgtacatccaatgtgttaggggtattttagtaattttatattatatcatcaccccttt 276  Q
    |||||||||||| |  | ||||||||||| || || |||| ||||||| || || ||||||| |||||||||||||||   || | ||||||| | | |     
T  52191198 atggaaaaagattgaaagacacccttttttatacacctctcgtgtacaccccatatgttaggagtattttagtaatttcgcatcacatcatcatctcctc 52191297  T
Q  277 tcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 349  Q
    | |||  ||||||||||||||||| ||| |||||||| | ||||||| ||| ||| ||| |||||||||||||    
T  52191298 ttatcctttctttcaatgtttttgtcacatgtcacaattctgtgtggctgttaaaaggtatatgccacctaag 52191370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 239 - 338
Target Start/End: Complemental strand, 54849919 - 54849820
Alignment:
Q  239 ggtattttagtaattttatattatatcatcaccccttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgta 338  Q
    ||||||||| |||||| | || | ||||||| ||  | ||||||||||||||||| |||||| ||| |||||||| || |||||||| | |||| |||||    
T  54849919 ggtattttaataatttcacatcacatcatcatcctctctcatctcttctttcaatatttttgtcacttgtcacaactgcgtgtgggtatcaaagtgtgta 54849820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 348
Target Start/End: Complemental strand, 36157918 - 36157857
Alignment:
Q  287 tttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaa 348  Q
    |||||||||||||| ||||| |||||| | ||| || |||| |||| |||||||||||||||    
T  36157918 tttcaatgtttttgtcacgtatcacaattatgtatgagtgtcaaagagtgtatgccacctaa 36157857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 172 - 349
Target Start/End: Complemental strand, 6917 - 6739
Alignment:
Q  172 ttaacatggaaaaagataggtaaacaccctttttcatgcatctcttgtgtacatcca-atgtgttaggggtattttagtaattttatattatatcatcac 270  Q
    |||| ||||||||||||||||| | ||| |||||||| ||  |||| |||||| ||  |||| |||||| ||||| |||||||||| || ||||||||||    
T  6917 ttaatatggaaaaagataggtagataccttttttcatacacttcttatgtacaccctcatgtattagggatatttaagtaattttacatcatatcatcac 6818  T
Q  271 cccttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 349  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6817 cctttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 6739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 179 - 349
Target Start/End: Original strand, 87162 - 87333
Alignment:
Q  179 ggaaaaagataggtaaacaccctttttcatgcatctcttgtgtacatccaatgtgttaggggtattttagtaattttatat--tatatcatcaccccttt 276  Q
    ||||||||||||||| ||||| |||||||| || || || |||||| || |||||||||||||||||||||||||||||||  |||||||||||   |||    
T  87162 ggaaaaagataggtagacaccttttttcatacaccttttatgtacaccccatgtgttaggggtattttagtaattttatattatatatcatcactatttt 87261  T
Q  277 tcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 349  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||    
T  87262 tcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgt-ggtgtacaagggtgtatgccacctaag 87333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 305 - 343
Target Start/End: Complemental strand, 5981 - 5943
Alignment:
Q  305 gtgtcacaaatgtgtgtgggtgtaaaagggtgtatgcca 343  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  5981 gtgtcacaaatgtgcgtgggtgtaaaagggtgtatgcca 5943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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