View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2198_low_14 (Length: 335)
Name: NF2198_low_14
Description: NF2198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2198_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 19 - 324
Target Start/End: Original strand, 5650217 - 5650521
Alignment:
| Q |
19 |
atgatacccttgttactcattcaacacaattactaaatttatatttatgaaaaaa-tatgattttttcttaggataattaattttgtgtgttgctaaaat |
117 |
Q |
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| T |
5650217 |
atgatacccttgttactcattcaacacaattactaaatttatatttatgaaaaaaatatgaatttttcttaggataatta-ttttgtgtgttactaaaat |
5650315 |
T |
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| Q |
118 |
attttaacaaaaaacataattaaaggacaattttaaaagcttagatgcattattaacaaatttattgtattaccaatatttttctaaccctatggtaatt |
217 |
Q |
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| T |
5650316 |
attttaacaaaaaacataattaaaggacaattttaaaagcttagatgcattattaacaaatttattgaattaccaatatttttctaa-cctatggtaatt |
5650414 |
T |
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| Q |
218 |
aggatatttgaccctcaatggtgtccaaagtctttccatgactaagactctctggattcgctattagacttactttcaagttggtatcaatatatttcat |
317 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||| || |
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| T |
5650415 |
agaatatttgaccctcaatggtgtccaaagtctttccatgactaagattctctgggttcgctattagacttactttcgagttggtatcaatatatttgat |
5650514 |
T |
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| Q |
318 |
ctttctt |
324 |
Q |
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||||||| |
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| T |
5650515 |
ctttctt |
5650521 |
T |
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