View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2198_low_16 (Length: 311)

Name: NF2198_low_16
Description: NF2198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2198_low_16
NF2198_low_16
[»] chr2 (8 HSPs)
chr2 (20-308)||(17666312-17666600)
chr2 (20-308)||(17716316-17716604)
chr2 (20-306)||(17717579-17717865)
chr2 (23-308)||(17703672-17703957)
chr2 (20-308)||(17647658-17647946)
chr2 (20-301)||(17621581-17621862)
chr2 (136-282)||(17719755-17719907)
chr2 (136-226)||(17720139-17720235)
[»] chr7 (4 HSPs)
chr7 (21-308)||(39985904-39986191)
chr7 (124-308)||(8017036-8017220)
chr7 (21-308)||(8102925-8103212)
chr7 (159-296)||(8667815-8667952)


Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 20 - 308
Target Start/End: Complemental strand, 17666600 - 17666312
Alignment:
Q  20 tgcagcagtgggctcatagataattctcatgacattaagaccagcaataagaccggcatcattagtagcttgtatctgattaaaattaaagtaaacaggg 119  Q
    ||||| ||||||||||| |||||||| || |||||||||||||| ||||||||||||||| |||||||||||| | |||||||||||||| ||| |||||    
T  17666600 tgcaggagtgggctcattgataattcccaggacattaagaccagaaataagaccggcatccttagtagcttgtctgtgattaaaattaaaataagcaggg 17666501  T
Q  120 atactaacaacggcattcttaatggcagagccaaggtaggcctcagcaacctcacgcatcttcgtgagtaccatggaagagatctcttctgccgaaaatt 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  17666500 atactaacaacggcattcttaatggcagagccaaggtaggcctcagcaacctcacgcatcttcgtgagtaccatggaagagatctcttctgcggaaaatt 17666401  T
Q  220 gcttatcttcacccttgtagttaacaccaatcataggcttttcatacgggccagaaataatcttaaatggccacaacttcatctcactc 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  17666400 gcttatcttcacccttgtagttaacaccaatcataggcttttcatacgggccagaaataatcttaaatggccacaacttcatatcactc 17666312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 20 - 308
Target Start/End: Complemental strand, 17716604 - 17716316
Alignment:
Q  20 tgcagcagtgggctcatagataattctcatgacattaagaccagcaataagaccggcatcattagtagcttgtatctgattaaaattaaagtaaacaggg 119  Q
    |||||||||||||||||  ||||||||||||| ||||||||||||||||  ||| ||||  |||||||||||| |||||  ||||||||||||| |||||    
T  17716604 tgcagcagtgggctcattaataattctcatgaaattaagaccagcaatagcaccagcatgcttagtagcttgtctctgagaaaaattaaagtaagcaggg 17716505  T
Q  120 atactaacaacggcattcttaatggcagagccaaggtaggcctcagcaacctcacgcatcttcgtgagtaccatggaagagatctcttctgccgaaaatt 219  Q
    | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||    
T  17716504 acagtaacaacggcattcttaatggcagagccaaggtaggcctcagcaacctcacgcatcttcgtgagtaccatggaagagatctcttctgcggcaaatt 17716405  T
Q  220 gcttatcttcacccttgtagttaacaccaatcataggcttttcatacgggccagaaataatcttaaatggccacaacttcatctcactc 308  Q
    ||||| ||| |||  ||||||||||||||||||| |||||||||| |||||||||||| |||||||| |||||||||||||| ||||||    
T  17716404 gcttaactttaccactgtagttaacaccaatcattggcttttcatccgggccagaaattatcttaaaaggccacaacttcatatcactc 17716316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 20 - 306
Target Start/End: Complemental strand, 17717865 - 17717579
Alignment:
Q  20 tgcagcagtgggctcatagataattctcatgacattaagaccagcaataagaccggcatcattagtagcttgtatctgattaaaattaaagtaaacaggg 119  Q
    ||||||||||||||||| |||||||  |||||||||||||||||||| |||| ||||||| |||||| |||||||||||  |  |||||||||| |||||    
T  17717865 tgcagcagtgggctcatcgataatttccatgacattaagaccagcaaaaagagcggcatccttagtaacttgtatctgagaatcattaaagtaagcaggg 17717766  T
Q  120 atactaacaacggcattcttaatggcagagccaaggtaggcctcagcaacctcacgcatcttcgtgagtaccatggaagagatctcttctgccgaaaatt 219  Q
    | | |||||||||||||| |||||| ||| |||| ||||||||| |||| |||||||||||||  ||||||||||||||||||||||||||| | |||||    
T  17717765 acagtaacaacggcattcctaatggtagaaccaaagtaggcctctgcaatctcacgcatcttccagagtaccatggaagagatctcttctgcagcaaatt 17717666  T
Q  220 gcttatcttcacccttgtagttaacaccaatcataggcttttcatacgggccagaaataatcttaaatggccacaacttcatctcac 306  Q
    ||||||||||||| |||||||| ||||||||||| |||||||||  | |||||||||| |||||||| |||||||||||||| ||||    
T  17717665 gcttatcttcaccattgtagtttacaccaatcattggcttttcacccaggccagaaattatcttaaaaggccacaacttcatatcac 17717579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 23 - 308
Target Start/End: Complemental strand, 17703957 - 17703672
Alignment:
Q  23 agcagtgggctcatagataattctcatgacattaagaccagcaataagaccggcatcattagtagcttgtatctgattaaaattaaagtaaacagggata 122  Q
    |||||||||||||| |||||||| ||||||||||||  ||||||||| | | ||||| |||||||||||| |||||  |  ||||||||||||||||| |    
T  17703957 agcagtgggctcatcgataattcccatgacattaagttcagcaataacagcagcatccttagtagcttgtctctgagaattattaaagtaaacagggaca 17703858  T
Q  123 ctaacaacggcattcttaatggcagagccaaggtaggcctcagcaacctcacgcatcttcgtgagtaccatggaagagatctcttctgccgaaaattgct 222  Q
     ||||||| |||||| |||||| |||||||| |||||||||||||| || ||| ||||||  ||||| ||||||||||||||||||||| | ||||||||    
T  17703857 gtaacaacagcattcctaatgggagagccaaagtaggcctcagcaatctgacgaatcttccagagtaacatggaagagatctcttctgcagtaaattgct 17703758  T
Q  223 tatcttcacccttgtagttaacaccaatcataggcttttcatacgggccagaaataatcttaaatggccacaacttcatctcactc 308  Q
    |||||||||| |||||||||||||||||||| ||||| |||| ||||||||||||||||||||| |||||||||||||| ||||||    
T  17703757 tatcttcaccattgtagttaacaccaatcattggcttatcatccgggccagaaataatcttaaaaggccacaacttcatatcactc 17703672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 20 - 308
Target Start/End: Complemental strand, 17647946 - 17647658
Alignment:
Q  20 tgcagcagtgggctcatagataattctcatgacattaagaccagcaataagaccggcatcattagtagcttgtatctgattaaaattaaagtaaacaggg 119  Q
    ||||||| ||||||| | |||||||| | ||||||||| |||||||| || || |||| |   ||| ||||||||||||| |  |||||||||| |||||    
T  17647946 tgcagcaatgggctccttgataattcccctgacattaataccagcaaaaacacaggcaaccacagtggcttgtatctgataattattaaagtaagcaggg 17647847  T
Q  120 atactaacaacggcattcttaatggcagagccaaggtaggcctcagcaacctcacgcatcttcgtgagtaccatggaagagatctcttctgccgaaaatt 219  Q
    | | ||||||| |||| |||||||||||||||||||||||||||||||||||| || |||||| |||||||||||| ||||||||||||||| | |||||    
T  17647846 aaagtaacaacagcatccttaatggcagagccaaggtaggcctcagcaacctctcgaatcttcatgagtaccatggcagagatctcttctgcggcaaatt 17647747  T
Q  220 gcttatcttcacccttgtagttaacaccaatcataggcttttcatacgggccagaaataatcttaaatggccacaacttcatctcactc 308  Q
    ||||||||||||| |||||||||||| ||||||| |||||||||| | |||||||||| |||||||| |||||||||||||| ||||||    
T  17647746 gcttatcttcaccattgtagttaacaacaatcattggcttttcatccaggccagaaattatcttaaaaggccacaacttcatatcactc 17647658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 20 - 301
Target Start/End: Complemental strand, 17621862 - 17621581
Alignment:
Q  20 tgcagcagtgggctcatagataattctcatgacattaagaccagcaataagaccggcatcattagtagcttgtatctgattaaaattaaagtaaacaggg 119  Q
    ||||||||||||||||| ||||||   |||||||||||||||||||| || | | ||||| ||||||  |||| |||||  |  ||||||||||||||||    
T  17621862 tgcagcagtgggctcatcgataatatccatgacattaagaccagcaaaaacagctgcatccttagtaatttgtctctgagaatcattaaagtaaacaggg 17621763  T
Q  120 atactaacaacggcattcttaatggcagagccaaggtaggcctcagcaacctcacgcatcttcgtgagtaccatggaagagatctcttctgccgaaaatt 219  Q
    | | ||||||| |||||| ||||||||||||||| |||||||||||||| |||||||||||||  ||||| |||||| |||||||||||||  | |||||    
T  17621762 acagtaacaacagcattcctaatggcagagccaacgtaggcctcagcaatctcacgcatcttccagagtatcatggatgagatctcttctggggcaaatt 17621663  T
Q  220 gcttatcttcacccttgtagttaacaccaatcataggcttttcatacgggccagaaataatcttaaatggccacaacttcat 301  Q
    |||||||||||||   || ||||||||||||||  |||||||||| |||||||||||| |||||||| ||||||||||||||    
T  17621662 gcttatcttcaccaaagttgttaacaccaatcaatggcttttcatccgggccagaaatcatcttaaaaggccacaacttcat 17621581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 136 - 282
Target Start/End: Complemental strand, 17719907 - 17719755
Alignment:
Q  136 tcttaatggcagagccaaggtaggcctcagcaacctcacgcatcttcgtgagtacca------tggaagagatctcttctgccgaaaattgcttatcttc 229  Q
    |||| ||||||||||||||||| |||||| ||| || |||||||||| |||||||||      ||||| | ||||||||||| |  ||||||||||| |     
T  17719907 tcttcatggcagagccaaggtaagcctcaacaatcttacgcatcttcatgagtaccactaccatggaatatatctcttctgcggttaattgcttatcatt 17719808  T
Q  230 acccttgtagttaacaccaatcataggcttttcatacgggccagaaataatct 282  Q
    |||||||||||||||||||||||| |||||||||  ||| |||||||| ||||    
T  17719807 acccttgtagttaacaccaatcattggcttttcagccggtccagaaattatct 17719755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 226
Target Start/End: Complemental strand, 17720235 - 17720139
Alignment:
Q  136 tcttaatggcagagccaaggtaggcctcagcaacctcacgcatcttcgtgag------taccatggaagagatctcttctgccgaaaattgcttatc 226  Q
    |||| ||||||||||||||||| |||||||||| || |||||||||| ||||      |||||||||| | ||||||||||| | ||||||||||||    
T  17720235 tcttcatggcagagccaaggtaagcctcagcaatcttacgcatcttcatgagtaccactaccatggaatatatctcttctgcggtaaattgcttatc 17720139  T

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Target: chr7 (Bit Score: 116; Significance: 5e-59; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 21 - 308
Target Start/End: Original strand, 39985904 - 39986191
Alignment:
Q  21 gcagcagtgggctcatagataattctcatgacattaagaccagcaataagaccggcatcattagtagcttgtatctgattaaaattaaagtaaacaggga 120  Q
    |||||||||||||||| |||||||| ||||||||||||||| |||||||  || ||||| || ||||||||   |||      |||||||||| ||||||    
T  39985904 gcagcagtgggctcattgataattcgcatgacattaagaccggcaataactccagcatccttggtagcttgacgctgggagtcattaaagtaagcaggga 39986003  T
Q  121 tactaacaacggcattcttaatggcagagccaaggtaggcctcagcaacctcacgcatcttcgtgagtaccatggaagagatctcttctgccgaaaattg 220  Q
     | ||||||| ||||||||||||||||| |||||||| || || |||| ||||||||||||| | || |||||||||||||||||||| || | |||||     
T  39986004 cagtaacaacagcattcttaatggcagaaccaaggtacgcttcggcaatctcacgcatcttcattagcaccatggaagagatctcttcggcagcaaattc 39986103  T
Q  221 cttatcttcacccttgtagttaacaccaatcataggcttttcatacgggccagaaataatcttaaatggccacaacttcatctcactc 308  Q
    |||||||||||| ||||||||||||||||| |  |||||||||   || ||||||||||||||||| |||||||||||||| ||||||    
T  39986104 cttatcttcacctttgtagttaacaccaataagtggcttttcagctggcccagaaataatcttaaaaggccacaacttcatgtcactc 39986191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 124 - 308
Target Start/End: Complemental strand, 8017220 - 8017036
Alignment:
Q  124 taacaacggcattcttaatggcagagccaaggtaggcctcagcaacctcacgcatcttcgtgagtaccatggaagagatctcttctgccgaaaattgctt 223  Q
    |||||||||||||||| |  |  || || ||||| || ||||||| ||||||||||||  |||||||||| || || || || || || | |||||||||    
T  8017220 taacaacggcattcttcacagttgaaccgaggtaagcttcagcaatctcacgcatctttatgagtaccatagacgaaatttcctcagcagcaaattgctt 8017121  T
Q  224 atcttcacccttgtagttaacaccaatcataggcttttcatacgggccagaaataatcttaaatggccacaacttcatctcactc 308  Q
     || |||||||||||||||||||||||||| |||||||||   || |||| ||||| |||||| |||||||||||||| ||||||    
T  8017120 gtcctcacccttgtagttaacaccaatcattggcttttcaccaggaccagcaataaccttaaaaggccacaacttcatgtcactc 8017036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 21 - 308
Target Start/End: Original strand, 8102925 - 8103212
Alignment:
Q  21 gcagcagtgggctcatagataattctcatgacattaagaccagcaataagaccggcatcattagtagcttgtatctgattaaaattaaagtaaacaggga 120  Q
    |||||||| |||||||  ||||||||||  ||||| | |||||| |||| ||| ||||| ||||| |||||   ||||  |  ||| |||||| ||||||    
T  8102925 gcagcagttggctcattaataattctcaaaacatttaaaccagcgataacaccagcatctttagttgcttgacgctgagaatcattgaagtaagcaggga 8103024  T
Q  121 tactaacaacggcattcttaatggcagagccaaggtaggcctcagcaacctcacgcatcttcgtgagtaccatggaagagatctcttctgccgaaaattg 220  Q
     | | || ||||||||||||||||     ||||| || || || |||| ||||||||||||  | |  |||||||| ||||| || || | || |||  |    
T  8103025 cagtgacgacggcattcttaatggtgacaccaagataagcttcggcaatctcacgcatcttaatcaaaaccatggatgagatttcctcagacgcaaacag 8103124  T
Q  221 cttatcttcacccttgtagttaacaccaatcataggcttttcatacgggccagaaataatcttaaatggccacaacttcatctcactc 308  Q
     || || |||||||||||||||||||||||||| |||||||||   || || | ||||| |||||| |||||||||||||| ||||||    
T  8103125 tttttcctcacccttgtagttaacaccaatcattggcttttcaccaggacccgcaataaccttaaaaggccacaacttcatgtcactc 8103212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 296
Target Start/End: Original strand, 8667815 - 8667952
Alignment:
Q  159 gcctcagcaacctcacgcatcttcgtgagtaccatggaagagatctcttctgccgaaaattgcttatcttcacccttgtagttaacaccaatcataggct 258  Q
    ||||| |||||||| |||||||| || || ||||| ||||| || || || ||  |||| ||||| |||| ||||||||| ||||||  ||||||||| |    
T  8667815 gcctccgcaacctctcgcatctttgtaagcaccatagaagatatttcctcagcacaaaagtgcttctcttgacccttgtacttaacagtaatcataggtt 8667914  T
Q  259 tttcatacgggccagaaataatcttaaatggccacaac 296  Q
    | ||||     |||||||||| ||| ||||||||||||    
T  8667915 tgtcattaacaccagaaataaccttgaatggccacaac 8667952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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