View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2198_low_24 (Length: 253)

Name: NF2198_low_24
Description: NF2198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2198_low_24
NF2198_low_24
[»] chr4 (6 HSPs)
chr4 (134-187)||(2035031-2035084)
chr4 (132-172)||(2034178-2034218)
chr4 (132-172)||(50064152-50064192)
chr4 (132-187)||(50064675-50064730)
chr4 (132-187)||(4900258-4900313)
chr4 (132-187)||(55593386-55593441)
[»] chr3 (2 HSPs)
chr3 (134-182)||(37921605-37921653)
chr3 (132-187)||(37921081-37921136)
[»] chr6 (2 HSPs)
chr6 (132-166)||(12151-12185)
chr6 (132-187)||(29844494-29844549)
[»] scaffold0518 (1 HSPs)
scaffold0518 (132-172)||(1081-1121)
[»] chr8 (1 HSPs)
chr8 (132-172)||(989660-989700)
[»] scaffold0237 (1 HSPs)
scaffold0237 (132-187)||(697-752)
[»] chr5 (2 HSPs)
chr5 (134-185)||(2320195-2320246)
chr5 (132-187)||(4808624-4808679)
[»] chr1 (2 HSPs)
chr1 (135-186)||(5567905-5567956)
chr1 (132-187)||(22506142-22506197)
[»] chr7 (2 HSPs)
chr7 (134-172)||(43210141-43210179)
chr7 (132-172)||(39459011-39459051)


Alignment Details
Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 134 - 187
Target Start/End: Complemental strand, 2035084 - 2035031
Alignment:
Q  134 ttaaatatgcaattcgtccatgtaatttaggcgcgttttcaattttgtccttgt 187  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||| |||||||    
T  2035084 ttaaatatgcaattcatccatataatttaggcgcgttttcaattttatccttgt 2035031  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 132 - 172
Target Start/End: Original strand, 2034178 - 2034218
Alignment:
Q  132 gcttaaatatgcaattcgtccatgtaatttaggcgcgtttt 172  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  2034178 gcttaaatatgcaattcgtccatgtaatttaggcgcgtttt 2034218  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 132 - 172
Target Start/End: Original strand, 50064152 - 50064192
Alignment:
Q  132 gcttaaatatgcaattcgtccatgtaatttaggcgcgtttt 172  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  50064152 gcttaaatatgcaattcgtccatgtaatttagacgcgtttt 50064192  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 187
Target Start/End: Complemental strand, 50064730 - 50064675
Alignment:
Q  132 gcttaaatatgcaattcgtccatgtaatttaggcgcgttttcaattttgtccttgt 187  Q
    ||||||||||||||||||||| |||||||| |||||||||| | ||| ||||||||    
T  50064730 gcttaaatatgcaattcgtccctgtaatttgggcgcgttttgattttcgtccttgt 50064675  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 187
Target Start/End: Original strand, 4900258 - 4900313
Alignment:
Q  132 gcttaaatatgcaattcgtccatgtaatttaggcgcgttttcaattttgtccttgt 187  Q
    ||||||||||||||| ||||| |||||||| |||||||||| | ||| ||||||||    
T  4900258 gcttaaatatgcaatccgtccctgtaatttgggcgcgttttgattttcgtccttgt 4900313  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 187
Target Start/End: Complemental strand, 55593441 - 55593386
Alignment:
Q  132 gcttaaatatgcaattcgtccatgtaatttaggcgcgttttcaattttgtccttgt 187  Q
    ||||||||||||||| ||||| |||||||| | |||||||||| ||| ||||||||    
T  55593441 gcttaaatatgcaatccgtccctgtaatttggacgcgttttcattttcgtccttgt 55593386  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 134 - 182
Target Start/End: Complemental strand, 37921653 - 37921605
Alignment:
Q  134 ttaaatatgcaattcgtccatgtaatttaggcgcgttttcaattttgtc 182  Q
    |||||||||||||||||||||||||||||| |||||||| | |||||||    
T  37921653 ttaaatatgcaattcgtccatgtaatttagacgcgttttaatttttgtc 37921605  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 187
Target Start/End: Original strand, 37921081 - 37921136
Alignment:
Q  132 gcttaaatatgcaattcgtccatgtaatttaggcgcgttttcaattttgtccttgt 187  Q
    ||||||||||| ||||||||| |||||||||||||| |||| | ||| ||||||||    
T  37921081 gcttaaatatgaaattcgtccctgtaatttaggcgcattttgattttcgtccttgt 37921136  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 166
Target Start/End: Complemental strand, 12185 - 12151
Alignment:
Q  132 gcttaaatatgcaattcgtccatgtaatttaggcg 166  Q
    |||||||||||||||||||||||||||||||||||    
T  12185 gcttaaatatgcaattcgtccatgtaatttaggcg 12151  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 187
Target Start/End: Complemental strand, 29844549 - 29844494
Alignment:
Q  132 gcttaaatatgcaattcgtccatgtaatttaggcgcgttttcaattttgtccttgt 187  Q
    ||||||||||||||||||||| | |||||| |||||||||| | ||| ||||||||    
T  29844549 gcttaaatatgcaattcgtccttataatttgggcgcgttttgattttcgtccttgt 29844494  T

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Target: scaffold0518 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0518
Description:

Target: scaffold0518; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 172
Target Start/End: Original strand, 1081 - 1121
Alignment:
Q  132 gcttaaatatgcaattcgtccatgtaatttaggcgcgtttt 172  Q
    ||||||||||||||||||||| |||||||| ||||||||||    
T  1081 gcttaaatatgcaattcgtccctgtaatttgggcgcgtttt 1121  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 172
Target Start/End: Original strand, 989660 - 989700
Alignment:
Q  132 gcttaaatatgcaattcgtccatgtaatttaggcgcgtttt 172  Q
    ||||||||||||||||||||  |||||||||||||||||||    
T  989660 gcttaaatatgcaattcgtctttgtaatttaggcgcgtttt 989700  T

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Target: scaffold0237 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 187
Target Start/End: Complemental strand, 752 - 697
Alignment:
Q  132 gcttaaatatgcaattcgtccatgtaatttaggcgcgttttcaattttgtccttgt 187  Q
    ||||||||||||||||||||| | |||||| |||||||||| | ||| ||||||||    
T  752 gcttaaatatgcaattcgtccttataatttgggcgcgttttgattttcgtccttgt 697  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 185
Target Start/End: Original strand, 2320195 - 2320246
Alignment:
Q  134 ttaaatatgcaattcgtccatgtaatttaggcgcgttttcaattttgtcctt 185  Q
    ||||||||||| ||||||||||||||||||||| ||||| | ||| ||||||    
T  2320195 ttaaatatgcatttcgtccatgtaatttaggcgtgttttgattttcgtcctt 2320246  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 187
Target Start/End: Complemental strand, 4808679 - 4808624
Alignment:
Q  132 gcttaaatatgcaattcgtccatgtaatttaggcgcgttttcaattttgtccttgt 187  Q
    ||||||||||||||||||||| |||||||| | |||||||| | ||| ||||||||    
T  4808679 gcttaaatatgcaattcgtccttgtaatttggacgcgttttgattttcgtccttgt 4808624  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 186
Target Start/End: Complemental strand, 5567956 - 5567905
Alignment:
Q  135 taaatatgcaattcgtccatgtaatttaggcgcgttttcaattttgtccttg 186  Q
    |||||||||||||||||| |||||||||| |||||||| | ||| |||||||    
T  5567956 taaatatgcaattcgtccctgtaatttagacgcgttttgattttcgtccttg 5567905  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 187
Target Start/End: Original strand, 22506142 - 22506197
Alignment:
Q  132 gcttaaatatgcaattcgtccatgtaatttaggcgcgttttcaattttgtccttgt 187  Q
    ||||||||||||||| ||||| |||||||| | |||||||| | ||||||||||||    
T  22506142 gcttaaatatgcaatccgtccctgtaatttggacgcgttttaatttttgtccttgt 22506197  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 172
Target Start/End: Original strand, 43210141 - 43210179
Alignment:
Q  134 ttaaatatgcaattcgtccatgtaatttaggcgcgtttt 172  Q
    ||||||||||||||||||| |||||||| ||||||||||    
T  43210141 ttaaatatgcaattcgtccctgtaatttgggcgcgtttt 43210179  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 172
Target Start/End: Original strand, 39459011 - 39459051
Alignment:
Q  132 gcttaaatatgcaattcgtccatgtaatttaggcgcgtttt 172  Q
    ||||||||||||||| |||||||||||||| |||| |||||    
T  39459011 gcttaaatatgcaatccgtccatgtaatttgggcgtgtttt 39459051  T

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