View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2198_low_26 (Length: 244)
Name: NF2198_low_26
Description: NF2198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2198_low_26 |
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Alignment Details
Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 11555811 - 11555891
Alignment:
| Q |
1 |
atttaaatcacatatcgaaaggatgcttgggaaatgaaaaggttagtaagttatgatagtaccataatttacagtcacttg |
81 |
Q |
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| T |
11555811 |
atttacatcacatatcgaaaggatgcttgggaaatgaaaaggttagtaagttatgatagtactataatttacagtcacttg |
11555891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 165 - 226
Target Start/End: Original strand, 11530461 - 11530522
Alignment:
| Q |
165 |
tcagacagaaataaaacaccatagacgcagctaggcttttcgataaattccggaacattttt |
226 |
Q |
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| T |
11530461 |
tcagacagaaataaaacaccatagacgcagctaggcttttcgataaattccggaacattttt |
11530522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 165 - 226
Target Start/End: Original strand, 11555958 - 11556019
Alignment:
| Q |
165 |
tcagacagaaataaaacaccatagacgcagctaggcttttcgataaattccggaacattttt |
226 |
Q |
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| T |
11555958 |
tcagacagaaataaaacaccatagacgcagctaggcttttcgataaattccggaacattttt |
11556019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 11530165 - 11530213
Alignment:
| Q |
1 |
atttaaatcacatatcgaaaggatgcttgggaaatgaaaaggttagtaa |
49 |
Q |
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| T |
11530165 |
atttacatcacatatcgaaaggatgcttgggaaatgaaaaggttagtaa |
11530213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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