View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2198_low_3 (Length: 569)
Name: NF2198_low_3
Description: NF2198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2198_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 464; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 1 - 550
Target Start/End: Original strand, 33856971 - 33857525
Alignment:
| Q |
1 |
tagtttatgattattaattgcacttcacatatgtttatgattttctgccgnnnnnnnngcttgctatatatatatgccatggttctaccatatgccgcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |
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| T |
33856971 |
tagtttatgattattaattgcacttcacatatgtttatgattttctgccgttttttttgcttgctatatatatatgccatggttctaccatatgctgcaa |
33857070 |
T |
|
| Q |
101 |
tgccatgatttttggtttgttgccatccaccataatattagtcctccagttgtatgtatgacatttaaattgtttaatctttgttggattgagacagacg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33857071 |
tgccatgatttttggtttgttgccatccaccataatattagtcctccagttgtatgtatgacatttaaattgtttaatctttgttggattgagacagacg |
33857170 |
T |
|
| Q |
201 |
gagtcctaatttagagactaatttgattaggttactaattgatggattaagttgtgacacactgcattgttgaagaa---aaactaattgatgatagaat |
297 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
33857171 |
gagtcctaatttagagactaatttgattaaaa-actaattgatggattaagttgtgacacactgcattgttgaagaagaaaaactaattgatgatagaat |
33857269 |
T |
|
| Q |
298 |
ttttccacg---taatgaactgatgaagtctatatctttggattattaaaataggggttcatgcattttatgtccttgggaatctaatgtccagtatgtc |
394 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
33857270 |
tttttcacacgttaatgaactgatgaagtctatatctttggagtattaaaataggggttcatgcattttatgtccttgggaaactaatgtccagtatgtc |
33857369 |
T |
|
| Q |
395 |
caccgataacatttgtcttacaaccgtaaaatattccgggaactctacaattaaataaacatcaactaaaagaagaattcatctcacaacaaaacttctc |
494 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33857370 |
caccgataacatttgtcttacaaccgtaaaatattccgggaactctacaattaaataaacatcaactaaaagaagaattcatctcacaacaaaacttctc |
33857469 |
T |
|
| Q |
495 |
caaaccatccaaggttcttcctctgttgaagtttagttttgctccatctctcttct |
550 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33857470 |
caaaccatccaaggttcttcctctgttgaagtttagttttgctccatctctcttct |
33857525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 1 - 550
Target Start/End: Complemental strand, 33923952 - 33923398
Alignment:
| Q |
1 |
tagtttatgattattaattgcacttcacatatgtttatgattttctgccgnnnnnnnngcttgctatatatatatgccatggttctaccatatgccgcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
33923952 |
tagtttatgattattaattgcacttcacatatgtttatgattttctgccgttttttttgcttgctatatatatatgccatggttctaccatatgctgcaa |
33923853 |
T |
|
| Q |
101 |
tgccatgatttttggtttgttgccatccaccataatattagtcctccagttgtatgtatgacatttaaattgtttaatctttgttggattgagacagacg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33923852 |
tgccatgatttttggtttgttgccatccaccataatattagtcctccagttgtatgtatgacatttaaattgtttaatctttgttggattgagacagacg |
33923753 |
T |
|
| Q |
201 |
gagtcctaatttagagactaatttgattaggttactaattgatggattaagttgtgacacactgcattgttgaagaa---aaactaattgatgatagaat |
297 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
33923752 |
gagtcctaatttagagactaatttgattaaaa-actaattgatggattaagttgtgacacactgcattgttgaagaagaaaaactaattgatgatagaat |
33923654 |
T |
|
| Q |
298 |
ttttccacg---taatgaactgatgaagtctatatctttggattattaaaataggggttcatgcattttatgtccttgggaatctaatgtccagtatgtc |
394 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
33923653 |
tttttcacacgttaatgaactgatgaagtctatatctttggagtattaaaataggggttcatgcattttatgtccttgggaaactaatgtccagtatgtc |
33923554 |
T |
|
| Q |
395 |
caccgataacatttgtcttacaaccgtaaaatattccgggaactctacaattaaataaacatcaactaaaagaagaattcatctcacaacaaaacttctc |
494 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33923553 |
caccgataacatttgtcttacaaccgtaaaatattccgggaactctacaattaaataaacatcaactaaaagaagaattcatctcacaacaaaacttctc |
33923454 |
T |
|
| Q |
495 |
caaaccatccaaggttcttcctctgttgaagtttagttttgctccatctctcttct |
550 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33923453 |
caaaccatccaaggttcttcctctgttgaagtttagttttgctccatctctcttct |
33923398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 83 - 353
Target Start/End: Original strand, 47872396 - 47872674
Alignment:
| Q |
83 |
ttctaccatatgccgcaatgccatgatttttggtttgttgccatccaccataatattagtcctccagttgtatgtatgac------atttaaattgttta |
176 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| |||||||| ||||| |||||| ||| |||| ||| ||| | |||||| ||||| | |
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|
| T |
47872396 |
ttctaccatatgccgtaatgccatgatttttggtttgtcgccatccaacataacattagttctctagttatatatataagtggcatatttaatttgttca |
47872495 |
T |
|
| Q |
177 |
atctttgttggattgagacagacggagtcctaatttagagactaatttgattaggtt----actaattgatggattaagttgtgacacactgcattgttg |
272 |
Q |
| |
|
|||||||||||||| || | |||||||||||||||||||||||||||| | || || | |||||||||||||||||||||| ||||||||||| |
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|
| T |
47872496 |
atctttgttggattaagtgtaatggagtcctaatttagagactaatttgatgaaattttgcacaatttgatggattaagttgtgacactctgcattgttg |
47872595 |
T |
|
| Q |
273 |
aagaaaaactaattgatgatagaatttttccacgtaatgaactgatgaagtctatatctttggattattaaaataggggtt |
353 |
Q |
| |
|
||||| || || |||||||||| ||| || |||||||||||||| |||||||||||||||| |||||||||||||||| |
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|
| T |
47872596 |
aagaactac--atcgatgatagaaatttgtcatgtaatgaactgatggagtctatatctttggagtattaaaataggggtt |
47872674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 236 - 353
Target Start/End: Complemental strand, 49547446 - 49547324
Alignment:
| Q |
236 |
taattgatggattaagttgtgacacactgcattgttgaagaa--aaactaat---tgatgatagaatttttccacgtaatgaactgatgaagtctatatc |
330 |
Q |
| |
|
||||||||||||||||||| | ||| ||||| ||||| |||| ||||| || |||||||||||||||| ||||||||||||| ||| ||| |||||| |
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|
| T |
49547446 |
taattgatggattaagttgggtcactctgcactgttggagaactaaactgatgagtgatgatagaattttttcacgtaatgaactaatgtagtttatatc |
49547347 |
T |
|
| Q |
331 |
tttggattattaaaataggggtt |
353 |
Q |
| |
|
|||||| |||||||||||||||| |
|
|
| T |
49547346 |
tttggagtattaaaataggggtt |
49547324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 163 - 193
Target Start/End: Complemental strand, 44261763 - 44261733
Alignment:
| Q |
163 |
atttaaattgtttaatctttgttggattgag |
193 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
44261763 |
atttaaattgtttaatctttgttggattgag |
44261733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 346 - 384
Target Start/End: Complemental strand, 487304 - 487266
Alignment:
| Q |
346 |
taggggttcatgcattttatgtccttgggaatctaatgt |
384 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
487304 |
taggggttcatgcattttatgtccatgggaaactaatgt |
487266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 14961562 - 14961599
Alignment:
| Q |
1 |
tagtttatgattattaattgcacttcacatatgtttat |
38 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
14961562 |
tagtttatgattattcattgcatttcacatatgtttat |
14961599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 355 - 387
Target Start/End: Original strand, 14961823 - 14961855
Alignment:
| Q |
355 |
atgcattttatgtccttgggaatctaatgtcca |
387 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |
|
|
| T |
14961823 |
atgcattttatgtccttgggaaactaatgtcca |
14961855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 169 - 221
Target Start/End: Original strand, 31264611 - 31264663
Alignment:
| Q |
169 |
attgtttaatctttgttggattgagacagacggagtcctaatttagagactaa |
221 |
Q |
| |
|
|||||| ||||||||||||| ||||||| | ||||||||||||| ||||||| |
|
|
| T |
31264611 |
attgttcaatctttgttggaatgagacaaatggagtcctaattttaagactaa |
31264663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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