View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2198_low_5 (Length: 426)

Name: NF2198_low_5
Description: NF2198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2198_low_5
NF2198_low_5
[»] chr6 (1 HSPs)
chr6 (143-320)||(10832522-10832699)
[»] chr7 (1 HSPs)
chr7 (91-138)||(40302557-40302605)
[»] chr8 (1 HSPs)
chr8 (101-137)||(15053590-15053626)
[»] chr4 (1 HSPs)
chr4 (103-139)||(13110518-13110554)
[»] chr5 (1 HSPs)
chr5 (103-135)||(42807079-42807111)
[»] chr1 (1 HSPs)
chr1 (103-135)||(48404288-48404320)


Alignment Details
Target: chr6 (Bit Score: 174; Significance: 2e-93; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 143 - 320
Target Start/End: Complemental strand, 10832699 - 10832522
Alignment:
Q  143 agagagaaatcaatttgacagtttatcttgaaattgtcagctcaatctctgggttctgggcaatcagagaattgagaagctttgttaagattgaaagata 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  10832699 agagagaaatcaatttgacagtttatcttgaaattgtcagctcaatctctgggttctgggcaatcagagaattcagaagctttgttaagattgaaagata 10832600  T
Q  243 aaagagaaagatgcatctatggccaacaaagaatttgagagattcattcaagatatcatacctgaaaaaactggaatg 320  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10832599 aaagagaaagatgcatctatggccaacaaagaatttgagagattcattcaagatatcatacctgaaaaaactggaatg 10832522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 91 - 138
Target Start/End: Original strand, 40302557 - 40302605
Alignment:
Q  91 tgggtgtcgag-attgttgaatatttgcgaccattgtaaatggtctaag 138  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  40302557 tgggtgtcgaggattgttgaatatttgtgaccattgtaaatggtctaag 40302605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 137
Target Start/End: Complemental strand, 15053626 - 15053590
Alignment:
Q  101 gattgttgaatatttgcgaccattgtaaatggtctaa 137  Q
    |||||||||||||||| ||||||||||||||||||||    
T  15053626 gattgttgaatatttgtgaccattgtaaatggtctaa 15053590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 139
Target Start/End: Complemental strand, 13110554 - 13110518
Alignment:
Q  103 ttgttgaatatttgcgaccattgtaaatggtctaagg 139  Q
    |||||||||||||| ||||||||||||||||||||||    
T  13110554 ttgttgaatatttgtgaccattgtaaatggtctaagg 13110518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 135
Target Start/End: Original strand, 42807079 - 42807111
Alignment:
Q  103 ttgttgaatatttgcgaccattgtaaatggtct 135  Q
    |||||||||||||| ||||||||||||||||||    
T  42807079 ttgttgaatatttgtgaccattgtaaatggtct 42807111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 135
Target Start/End: Complemental strand, 48404320 - 48404288
Alignment:
Q  103 ttgttgaatatttgcgaccattgtaaatggtct 135  Q
    |||||||||||||| ||||||||||||||||||    
T  48404320 ttgttgaatatttgtgaccattgtaaatggtct 48404288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University