View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2199_high_2 (Length: 463)

Name: NF2199_high_2
Description: NF2199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2199_high_2
NF2199_high_2
[»] chr5 (6 HSPs)
chr5 (1-251)||(2593125-2593375)
chr5 (266-462)||(2592848-2593044)
chr5 (49-113)||(25785375-25785439)
chr5 (34-91)||(25451979-25452036)
chr5 (49-122)||(28832871-28832944)
chr5 (296-332)||(32576065-32576101)
[»] chr1 (3 HSPs)
chr1 (49-113)||(4650777-4650841)
chr1 (48-122)||(47102181-47102255)
chr1 (49-106)||(13599118-13599175)
[»] scaffold0078 (1 HSPs)
scaffold0078 (49-122)||(32852-32925)
[»] chr4 (2 HSPs)
chr4 (30-106)||(5143961-5144037)
chr4 (49-106)||(16628194-16628251)
[»] chr8 (4 HSPs)
chr8 (49-112)||(18869872-18869935)
chr8 (49-112)||(33037135-33037198)
chr8 (283-329)||(13241978-13242024)
chr8 (49-106)||(19751737-19751794)
[»] chr3 (6 HSPs)
chr3 (49-112)||(1306693-1306756)
chr3 (48-122)||(6794067-6794141)
chr3 (49-122)||(4386350-4386423)
chr3 (49-122)||(37466975-37467048)
chr3 (34-91)||(47878791-47878848)
chr3 (34-91)||(54192730-54192787)
[»] chr6 (1 HSPs)
chr6 (52-122)||(24435278-24435348)
[»] scaffold1764 (1 HSPs)
scaffold1764 (34-91)||(941-998)
[»] scaffold0006 (2 HSPs)
scaffold0006 (49-106)||(6403-6460)
scaffold0006 (49-105)||(6916-6972)
[»] chr7 (3 HSPs)
chr7 (34-91)||(30246475-30246532)
chr7 (48-112)||(18409488-18409552)
chr7 (34-106)||(21983961-21984033)
[»] chr2 (2 HSPs)
chr2 (34-91)||(22713136-22713193)
chr2 (49-106)||(39483594-39483651)


Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 2593375 - 2593125
Alignment:
Q  1 ccaaggaaattgttgttgaaaaagatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaatt 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||    
T  2593375 ccaaggaaattgttgttgaaaaacatgtttcgaaagacaatccaacaaatgtgttcactaaatcatttcttagatcaaggttcaagcattgatttgaatt 2593276  T
Q  101 gatcaattttgttagagagtaactcctggatggagaaaacaacaaaccagggatgataaatgagtagaaatgagagaatgttctttgagagcttttggat 200  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2593275 gatcaattttgttagagagtaactcgtggatggagaaaacaacaaaccagggatgataaatgagtagaaatgagagaatgttctttgagagcttttggat 2593176  T
Q  201 ataatttcttgtaatatatttgtattactcattttctctgctctcttacct 251  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  2593175 ataatttcttgtaatatatttgtatcactcattttctctgctctcttacct 2593125  T

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Target: chr5; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 266 - 462
Target Start/End: Complemental strand, 2593044 - 2592848
Alignment:
Q  266 ctgttattggttgcctttgatatttattccacacatctaaatttattcgtgtgatatttgagttcgaagtcaaaacatcaacaactactcttgaactttg 365  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2593044 ctgttattggttgcctttgatatttatttcacacatctaaatttattcgtgtgatatttgagttcgaagtcaaaacatcaacaactactcttgaactttg 2592945  T
Q  366 ataaatgtaaagtacatttaagtgcggcttagattttataaggttgctagatcatttgatacattgtgatgtgagttcgaacctgcaattcttctct 462  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||    
T  2592944 ataaatttaaagtacatttaagtgcggcttagattttataaggttgctagattatttgatacattgtgatgtaagttcgaacctacaattcttctct 2592848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 49 - 113
Target Start/End: Complemental strand, 25785439 - 25785375
Alignment:
Q  49 atgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgtt 113  Q
    |||| |||||||||||| ||| ||||||||||||||| || || ||||| |||||||| ||||||    
T  25785439 atgtattcaccaaatcattacctagatcaaggttcaatcaatgttttgacttgatcaaatttgtt 25785375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 91
Target Start/End: Original strand, 25451979 - 25452036
Alignment:
Q  34 aagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattg 91  Q
    ||||||||||| || |  |||||||||||||| |||  ||||||||||||||||||||    
T  25451979 aagacaatccagcagacatgttcaccaaatcattaccaagatcaaggttcaagcattg 25452036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 122
Target Start/End: Complemental strand, 28832944 - 28832871
Alignment:
Q  49 atgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgttagagagtaa 122  Q
    ||||||| ||||| ||| | | ||||||||||||||||||||| || || |||||||| ||||||  |||||||    
T  28832944 atgtgtttaccaattcattgcctagatcaaggttcaagcattgcttggacttgatcaagtttgttgaagagtaa 28832871  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 332
Target Start/End: Complemental strand, 32576101 - 32576065
Alignment:
Q  296 acacatctaaatttattcgtgtgatatttgagttcga 332  Q
    ||||||||||||||||| |||||| ||||||||||||    
T  32576101 acacatctaaatttattagtgtgagatttgagttcga 32576065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 49 - 113
Target Start/End: Complemental strand, 4650841 - 4650777
Alignment:
Q  49 atgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgtt 113  Q
    ||||||||| ||||||| | ||||||||||||||||| ||||| || || |||||||||||||||    
T  4650841 atgtgttcatcaaatcattgcttagatcaaggttcaaacattgtttggacttgatcaattttgtt 4650777  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 48 - 122
Target Start/End: Original strand, 47102181 - 47102255
Alignment:
Q  48 aatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgttagagagtaa 122  Q
    |||||||| ||||| ||| | | ||||||||||||||||||||| || || |||||||| ||||||  |||||||    
T  47102181 aatgtgtttaccaagtcattgcctagatcaaggttcaagcattgcttggacttgatcaagtttgttgaagagtaa 47102255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 106
Target Start/End: Complemental strand, 13599175 - 13599118
Alignment:
Q  49 atgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaa 106  Q
    ||||||| ||||| ||| | ||||||||||||||||||||||| || || ||||||||    
T  13599175 atgtgtttaccaagtcattgcttagatcaaggttcaagcattgcttggacttgatcaa 13599118  T

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Target: scaffold0078 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 49 - 122
Target Start/End: Complemental strand, 32925 - 32852
Alignment:
Q  49 atgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgttagagagtaa 122  Q
    ||||||| ||||| ||| ||| ||||||||||||||||||||| || || |||||||| ||||||  |||||||    
T  32925 atgtgtttaccaagtcattacctagatcaaggttcaagcattgcttagacttgatcaagtttgttgaagagtaa 32852  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 30 - 106
Target Start/End: Complemental strand, 5144037 - 5143961
Alignment:
Q  30 tcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaa 106  Q
    |||||||| ||||| ||  ||||||| ||||||||| | | ||||||||||||||||||||| ||  ||||||||||    
T  5144037 tcgaaagagaatccgacggatgtgtttaccaaatcattgcctagatcaaggttcaagcattgcttgaaattgatcaa 5143961  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 106
Target Start/End: Original strand, 16628194 - 16628251
Alignment:
Q  49 atgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaa 106  Q
    ||||||| ||||| ||| ||| ||||||||||||||||||||| || || ||||||||    
T  16628194 atgtgtttaccaagtcattacctagatcaaggttcaagcattgcttggacttgatcaa 16628251  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 112
Target Start/End: Original strand, 18869872 - 18869935
Alignment:
Q  49 atgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgt 112  Q
    ||||||||||||| ||| ||| ||||||||| ||||||||||| || || |||||||| |||||    
T  18869872 atgtgttcaccaagtcattacctagatcaagattcaagcattgcttggacttgatcaaatttgt 18869935  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 112
Target Start/End: Original strand, 33037135 - 33037198
Alignment:
Q  49 atgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgt 112  Q
    ||||||||||||| ||| ||| ||||||||| ||||||||||| || || |||||||| |||||    
T  33037135 atgtgttcaccaagtcattacctagatcaagattcaagcattgcttggacttgatcaaatttgt 33037198  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 283 - 329
Target Start/End: Complemental strand, 13242024 - 13241978
Alignment:
Q  283 tgatatttattccacacatctaaatttattcgtgtgatatttgagtt 329  Q
    ||||| ||||||||||||||||| ||| || ||||||||||||||||    
T  13242024 tgatacttattccacacatctaagttttttagtgtgatatttgagtt 13241978  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 106
Target Start/End: Original strand, 19751737 - 19751794
Alignment:
Q  49 atgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaa 106  Q
    ||||||| ||||| ||| ||| ||||||||||||||||||||| || || ||||||||    
T  19751737 atgtgtttaccaagtcattacctagatcaaggttcaagcattgcttggacttgatcaa 19751794  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 112
Target Start/End: Complemental strand, 1306756 - 1306693
Alignment:
Q  49 atgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgt 112  Q
    ||||||||||||| ||| | | ||||||||||||||||||||| || || |||||||| |||||    
T  1306756 atgtgttcaccaagtcattgcctagatcaaggttcaagcattgcttggacttgatcaagtttgt 1306693  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 48 - 122
Target Start/End: Original strand, 6794067 - 6794141
Alignment:
Q  48 aatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgttagagagtaa 122  Q
    |||||||| ||||| ||| | | ||||||||||||||||||||| || || |||||||| ||||||  |||||||    
T  6794067 aatgtgtttaccaagtcattgcctagatcaaggttcaagcattgcttggacttgatcaagtttgttgaagagtaa 6794141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 122
Target Start/End: Original strand, 4386350 - 4386423
Alignment:
Q  49 atgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgttagagagtaa 122  Q
    |||||||||| || ||| ||| |||||||||||||||| |||| || || ||| |||||||||||  |||||||    
T  4386350 atgtgttcactaagtcattacctagatcaaggttcaagaattgcttggacttggtcaattttgttgaagagtaa 4386423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 122
Target Start/End: Complemental strand, 37467048 - 37466975
Alignment:
Q  49 atgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgttagagagtaa 122  Q
    ||||||| ||||| ||| |||  |||||||||||||||||||| || || |||||||| ||||||  |||||||    
T  37467048 atgtgtttaccaagtcattaccgagatcaaggttcaagcattgtttggacttgatcaaatttgttgaagagtaa 37466975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 91
Target Start/End: Complemental strand, 47878848 - 47878791
Alignment:
Q  34 aagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattg 91  Q
    ||||||||||| || |  |||||||||||||| |||  ||||||||||||||||||||    
T  47878848 aagacaatccagcagacatgttcaccaaatcattaccaagatcaaggttcaagcattg 47878791  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 91
Target Start/End: Original strand, 54192730 - 54192787
Alignment:
Q  34 aagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattg 91  Q
    ||||||||||| || |  |||||||||||||| |||  ||||||||||||||||||||    
T  54192730 aagacaatccagcagacatgttcaccaaatcattaccaagatcaaggttcaagcattg 54192787  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 122
Target Start/End: Original strand, 24435278 - 24435348
Alignment:
Q  52 tgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgttagagagtaa 122  Q
    |||| ||||| ||| ||| ||||||||||||||||||||| || || |||||||| ||||||  |||||||    
T  24435278 tgtttaccaagtcattacctagatcaaggttcaagcattgcttggacttgatcaagtttgttgaagagtaa 24435348  T

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Target: scaffold1764 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1764
Description:

Target: scaffold1764; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 91
Target Start/End: Original strand, 941 - 998
Alignment:
Q  34 aagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattg 91  Q
    ||||||||||| || |  |||||||||||||| |||  ||||||||||||||||||||    
T  941 aagacaatccagcagacatgttcaccaaatcattaccaagatcaaggttcaagcattg 998  T

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Target: scaffold0006 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 106
Target Start/End: Complemental strand, 6460 - 6403
Alignment:
Q  49 atgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaa 106  Q
    ||||||| ||||| ||| | ||||||||||||||||||||||| || || ||||||||    
T  6460 atgtgtttaccaagtcattgcttagatcaaggttcaagcattgcttggacttgatcaa 6403  T

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Target: scaffold0006; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 6972 - 6916
Alignment:
Q  49 atgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatca 105  Q
    ||||||| ||||| ||| | ||||||||||||||||||||||| || || |||||||    
T  6972 atgtgtttaccaagtcattgcttagatcaaggttcaagcattgcttggacttgatca 6916  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 91
Target Start/End: Original strand, 30246475 - 30246532
Alignment:
Q  34 aagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattg 91  Q
    ||||||||||| || |  |||||||||||||| |||  ||||||||||||||||||||    
T  30246475 aagacaatccagcagacatgttcaccaaatcattaccaagatcaaggttcaagcattg 30246532  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 112
Target Start/End: Complemental strand, 18409552 - 18409488
Alignment:
Q  48 aatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgt 112  Q
    |||||||||||||| | | | | ||||||||||||||||||||| || || |||||||| |||||    
T  18409552 aatgtgttcaccaagttattgcctagatcaaggttcaagcattgcttggacttgatcaagtttgt 18409488  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 106
Target Start/End: Complemental strand, 21984033 - 21983961
Alignment:
Q  34 aagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaa 106  Q
    |||| |||||| || ||||||| ||||| ||| | | ||||||||||||||||||||| || || ||||||||    
T  21984033 aagagaatccagcagatgtgtttaccaagtcattgcctagatcaaggttcaagcattgcttggacttgatcaa 21983961  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 91
Target Start/End: Complemental strand, 22713193 - 22713136
Alignment:
Q  34 aagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattg 91  Q
    ||||||||||| || |  |||||||||||||| |||  ||||||||||||||||||||    
T  22713193 aagacaatccagcagacatgttcaccaaatcattaccaagatcaaggttcaagcattg 22713136  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 106
Target Start/End: Complemental strand, 39483651 - 39483594
Alignment:
Q  49 atgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaa 106  Q
    ||||||||||||| ||| | | ||||||||||||||||||||| || || ||||||||    
T  39483651 atgtgttcaccaagtcattgcctagatcaaggttcaagcattgcttggacttgatcaa 39483594  T

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