View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2199_low_10 (Length: 310)
Name: NF2199_low_10
Description: NF2199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2199_low_10 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 31109685 - 31109984
Alignment:
| Q |
1 |
tcatcaactgtaacaacagagtatgtcatcgatttttcatatgactgaatggtccatgactacccagtaaattgaactcaactttnnnnnnnnnnnnnnn |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31109685 |
tcatcaactgtaacaacagagtatgtcatcgatttttcatatgactgaatggtccatgactacccagtaaattgaactcaacttttatatctatatctat |
31109784 |
T |
|
| Q |
101 |
nnnnnnnngtagtacaaattacaatttacagcttgtatcaacttgtgcttgcatatcggcatatcagcatggtacttaacaagcgatgaaataacagttt |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31109785 |
atctatatgtagtacaaattacaattcacagcttgtatcaacttgtgcttgcatatcggcatatcagcatggtacttaacaagcgatgaaataacagttt |
31109884 |
T |
|
| Q |
201 |
cagtt-------nnnnnnngaagcagaacattagattcttggagaaccaaccaatattggtccgtgactaccaagtaaattgaactcaagttctatatct |
293 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
31109885 |
cagttaaaaaaaaaaaaaaaaagcagaacattagattcttggagaaccaaccaatattggtccgtgactaccaagtaaattgaactcaacttctatatct |
31109984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 214 - 291
Target Start/End: Original strand, 31080096 - 31080169
Alignment:
| Q |
214 |
aagcagaacattagattcttggagaaccaaccaatattggtccgtgactaccaagtaaattgaactcaagttctatat |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||| || |||||| |||| |||||||||||||||||||| |||||||| |
|
|
| T |
31080096 |
aagcagaacattagattcttggagaaccaa----tactggtccatgaccaccaagtaaattgaactcaacttctatat |
31080169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University