View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2199_low_12 (Length: 257)
Name: NF2199_low_12
Description: NF2199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2199_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 73 - 238
Target Start/End: Original strand, 36467563 - 36467729
Alignment:
| Q |
73 |
gtacaaactagtaataacttaaaatgcttcattttaaatttcgcattgagcatcaatatgtgttggaacggtcctgattaaaaaagttttatgctatgta |
172 |
Q |
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| T |
36467563 |
gtacaaactagtaataacttaaaatgcttcaatttagatttcgcgttgagcatcaatatgtgttggaacggtcctgattaaaaaagttttatgctatgta |
36467662 |
T |
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| Q |
173 |
-nnnnnnnaccagtgaattatagaaatctcatccataaatttaaaaagagaggtaataagacaagat |
238 |
Q |
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| T |
36467663 |
ttttttttaccagtgaattatagaaatctcatccataaatttaaaaagagaggtaataagacaagat |
36467729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 96 - 238
Target Start/End: Original strand, 36445118 - 36445260
Alignment:
| Q |
96 |
atgcttcattttaaatttcgcattgagcatcaatatgtgttggaacggtcctgattaaaaaagttttatgctatgtannnnnnnaccagtgaattataga |
195 |
Q |
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| T |
36445118 |
atgctccattttagatttcgcgttgagcatcaatatgtgttggaacggtcctgattaaaaaagttttatgctatgtatttttttaccagtgaattataga |
36445217 |
T |
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| Q |
196 |
aatctcatccataaatttaaaaagagaggtaataagacaagat |
238 |
Q |
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| T |
36445218 |
aatctcatccataaatttaaaaagagaggtaataagacaagat |
36445260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 75 - 138
Target Start/End: Original strand, 54315879 - 54315942
Alignment:
| Q |
75 |
acaaactagtaataacttaaaatgcttcattttaaatttcgcattgagcatcaatatgtgttgg |
138 |
Q |
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| T |
54315879 |
acaaactgataataacttaaaaggcctcattttagatttcgccttgagcatcaatatgtgttgg |
54315942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 138
Target Start/End: Complemental strand, 33670136 - 33670073
Alignment:
| Q |
75 |
acaaactagtaataacttaaaatgcttcattttaaatttcgcattgagcatcaatatgtgttgg |
138 |
Q |
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|||||||| ||||||||||||| || |||||||| ||||||| |||||| || ||||||||||| |
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| T |
33670136 |
acaaactaataataacttaaaaggcctcattttagatttcgccttgagcctcgatatgtgttgg |
33670073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 132
Target Start/End: Complemental strand, 9159723 - 9159666
Alignment:
| Q |
75 |
acaaactagtaataacttaaaatgcttcattttaaatttcgcattgagcatcaatatg |
132 |
Q |
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|||||||||||||||||||||| |||||||||| ||||| | || ||| |||||||| |
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| T |
9159723 |
acaaactagtaataacttaaaagacttcattttagatttctccttcagcctcaatatg |
9159666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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