View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2199_low_14 (Length: 229)
Name: NF2199_low_14
Description: NF2199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2199_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 162; Significance: 1e-86; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 27 - 208
Target Start/End: Original strand, 17380081 - 17380262
Alignment:
| Q |
27 |
gaaaagaactcaacaacatagagcattgggaatatccttatcatgttctagattgtgtttcatctcatctaacagcatttaaaatatagactatgaacca |
126 |
Q |
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| T |
17380081 |
gaaaagaactcaacaacttagagcattgggaatatccatatcatgttctagattgtgtttcatctcatctaacatcatttaaaatatagactatgaacca |
17380180 |
T |
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| Q |
127 |
ttggaagctgattttcaaatcaagacatatattttgcagaatgtgattgtgacttttacagattatgaccatttgtcattct |
208 |
Q |
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| T |
17380181 |
ttggaagctgattttcgaatcacgacatatattttgcagaatgtgattgtgacttttacagattatgaccatttgtcattct |
17380262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 30 - 199
Target Start/End: Original strand, 17392578 - 17392745
Alignment:
| Q |
30 |
aagaactcaacaac-atagagcattgggaatatccttatcatgttctagattgtgtttcatctcatctaacagcattt-aaaatatagactatgaaccat |
127 |
Q |
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| T |
17392578 |
aagaattcaacaaccatagagcattgggaatatccagatcatgttccagaatgtgtttcgtctcatctaacaaaatttgaagttatagactatgaagctt |
17392677 |
T |
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| Q |
128 |
tggaagctgattttcaaatcaagacatatattttgcagaatgtgattgtgacttttacagattatgaccatt |
199 |
Q |
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| T |
17392678 |
gcgaagctgattttcgattcgcaacatatattttgcagaatgcga----gacttttacaagttatgaccatt |
17392745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 43 - 169
Target Start/End: Original strand, 17383882 - 17384009
Alignment:
| Q |
43 |
catagagcattgggaatatccttatcatgttctagattgtgtttcatctcatctaacagcattt-aaaatatagactatgaaccattggaagctgatttt |
141 |
Q |
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| T |
17383882 |
catagagcattgggaatatccagatcatgttccagaatgtgtttcgtctaatctaacaaaatttgaagttatgcactatgaagcttgggaagctgatttt |
17383981 |
T |
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| Q |
142 |
caaatcaagacatatattttgcagaatg |
169 |
Q |
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| T |
17383982 |
cgattcgcaacatatattttgcagaatg |
17384009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 100
Target Start/End: Original strand, 17377522 - 17377571
Alignment:
| Q |
51 |
attgggaatatccttatcatgttctagattgtgtttcatctcatctaaca |
100 |
Q |
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| T |
17377522 |
attgggaatatccagatcatgttccagaatgtgtttcgtctcatctaaca |
17377571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 43 - 169
Target Start/End: Complemental strand, 26052871 - 26052744
Alignment:
| Q |
43 |
catagagcattgggaatatccttatcatgttctagattgtgtttcatctcatctaacagcattt-aaaatatagactatgaaccattggaagctgatttt |
141 |
Q |
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||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||| |||| || ||||||||||||| | | ||| ||||| || |
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| T |
26052871 |
catagagcattgggaatatccagatcatgttccagaatgtgtttcatctcatctaacaaaatttgaagttatagactatgaagcttgtgaaactgatatt |
26052772 |
T |
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| Q |
142 |
caaatcaagacatatattttgcagaatg |
169 |
Q |
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| T |
26052771 |
cgattcgcaacatatattttgcagaatg |
26052744 |
T |
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