View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2199_low_8 (Length: 359)
Name: NF2199_low_8
Description: NF2199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2199_low_8 |
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| [»] scaffold0179 (1 HSPs) |
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Alignment Details
Target: scaffold0179 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: scaffold0179
Description:
Target: scaffold0179; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 18 - 355
Target Start/End: Original strand, 1845 - 2182
Alignment:
| Q |
18 |
atgacatatgtggcattcttcattctaagttcttctcttcttctactttagtaattaattacctacttcattgctgatactttttgttactctaattctt |
117 |
Q |
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| T |
1845 |
atgacatatgtggcattcatctttctaagttcttctcttcttctactttagtaattaattacctacttcattgctgatactttttgttactctaattctt |
1944 |
T |
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| Q |
118 |
catatttaaattggaatgaaatttgaggattggtaatattgatatgcacatcaactgcttccaatttctctctaaaccttggcagcaacataagaaaaaa |
217 |
Q |
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| T |
1945 |
catatttaaattggaatgaaatttgaggattggtaatattgatatgcacatcaactgcttccaatttctctctaaaccttggcagcaacataagaaaaaa |
2044 |
T |
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| Q |
218 |
tgaattatgctgtatatactcaagaaaaacttacagactagttgataaccatgttgtatatactcatcacaaccctctagtttctctgtaacttaatggc |
317 |
Q |
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| T |
2045 |
tgaattatgctgtatatactcaagaaaaacttacagactagttgataaccaagttgtatatactcatcacaaccctctagtttctctgtaacttaatggc |
2144 |
T |
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| Q |
318 |
cgcaagnnnnnnnnntggagagtttttattgtctgtga |
355 |
Q |
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| T |
2145 |
cgcaagaaaaaaaaatggacagtttttattgtctgtga |
2182 |
T |
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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 91 - 158
Target Start/End: Complemental strand, 15719345 - 15719278
Alignment:
| Q |
91 |
ctgatactttttgttactctaattcttcatatttaaattggaatgaaatttgaggattggtaatattg |
158 |
Q |
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| T |
15719345 |
ctgatactttttgtttctctaaatcttcatatttaaattcgaatgcaatttgaggattggtaaaattg |
15719278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 123
Target Start/End: Complemental strand, 16701204 - 16701105
Alignment:
| Q |
24 |
tatgtggcattcttcattctaagttcttctcttcttctactttagtaattaattacctacttcattgctgatactttttgttactctaattcttcatatt |
123 |
Q |
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|||||| |||||| | ||||||||||||||| | |||||||||||||||||||||| |||| ||||||||||||||||| | |||||||||||||| |
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| T |
16701204 |
tatgtgccattctgccatctaagttcttctctcttgctactttagtaattaattacctttttcaatgctgatactttttgttgttttaattcttcatatt |
16701105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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