View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2200_high_1 (Length: 748)
Name: NF2200_high_1
Description: NF2200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2200_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-128; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 3745239 - 3744891
Alignment:
| Q |
1 |
acatcggaatcgaaggatgaacttgaccggtagcctatataagatttctggaatgacgtcggaaggaagagtggtggacacacaaaggtgcttacttggt |
100 |
Q |
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| T |
3745239 |
acatcggaattgaaggatgaacttcaccggtagcctacataagatttctggaatgacgtcggaaggaagagtggtggacacacgaaggtgcttacttggt |
3745140 |
T |
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| Q |
101 |
acaaccgagagatgattgttgatggaagttgtttcctctgtcgtagaggaataaacggcaccgttttgatcacgcctcttgctacccgaagaagccatat |
200 |
Q |
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| T |
3745139 |
acaaccgagagatgattgttgatggaagttgtttcctctgtcgtagaggaataaacagcaccgttttgatcacgcctcttgctaccccaagaagccatat |
3745040 |
T |
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| Q |
201 |
acggttgtgactctaaaccctaaaaccttaaacctaatgaatgcaata--tatagaaggctgatatatctgattatnnnnnnnnnnnnnnnnnnnnnnng |
298 |
Q |
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| T |
3745039 |
tcagttgtgactctaaaccctaaaaccttaaacctaacgaatgcaatatatatagaaggctgatatatctgattataaaaaataaaaataaaaataaaag |
3744940 |
T |
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| Q |
299 |
ggctagtaacgagtgtttttgttttatgttatcttcgcatatctttctt |
347 |
Q |
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| T |
3744939 |
ggctagtaacgagtgtttttgttttatgttatcttcgcatatctttctt |
3744891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 510 - 704
Target Start/End: Complemental strand, 3744846 - 3744654
Alignment:
| Q |
510 |
ttattcaataataataactttaatattttga--------catatacaacaatgacatgtagcttgatgaaaaatagttaatatcagttaatatcaactgt |
601 |
Q |
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| T |
3744846 |
ttattcaataataataactttaatattttgaatatttgacatatacaacaatgacatgtagtttgatgaaaaatagttaatatca----------actgt |
3744757 |
T |
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| Q |
602 |
gacatccgtaaccattttctaagcagattttctaaagttcgaaaccaaacgtnnnnnnnnnnnnntacaatgggtagagagagagctatctatctattta |
701 |
Q |
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| T |
3744756 |
gacatccgtaaccattttctaagcagattttctaaagtttgaaaccaaacgtaaaaaataaaaaatacaatgggtagagagagagctatctatctattta |
3744657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 4142918 - 4142989
Alignment:
| Q |
1 |
acatcggaatcgaaggatgaacttgaccggtagcctatataagatttctggaatgacgtcggaaggaagagt |
72 |
Q |
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| T |
4142918 |
acatcggaatcgaaggatgaactttactggtagcctacatatgatttctggaatgacgtcggaaggaagagt |
4142989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 3753855 - 3753784
Alignment:
| Q |
1 |
acatcggaatcgaaggatgaacttgaccggtagcctatataagatttctggaatgacgtcggaaggaagagt |
72 |
Q |
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| T |
3753855 |
acatcggaatcgaaggatgaactttaccggtaacctacataggatttctggaatgacgtcgtaaggaagagt |
3753784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 4158728 - 4158799
Alignment:
| Q |
1 |
acatcggaatcgaaggatgaacttgaccggtagcctatataagatttctggaatgacgtcggaaggaagagt |
72 |
Q |
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| T |
4158728 |
acattggaatcggaggatgaactttaccggtagcctacatatgatttctagaatgacgtcggaaggaagagt |
4158799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 698 - 741
Target Start/End: Complemental strand, 3734450 - 3734407
Alignment:
| Q |
698 |
tttatatacaaacttgagctatatattctaagttctgatgatgt |
741 |
Q |
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| T |
3734450 |
tttatatacaaacttgagctatatattctaagttatgatgatgt |
3734407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 6e-39; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 11081450 - 11081304
Alignment:
| Q |
1 |
acatcggaatcgaaggatgaacttgaccggtagcctatataagatttctggaatgacgtcggaaggaagagtggtggacacacaaaggtgcttacttggt |
100 |
Q |
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|||| ||||||||||||||||||| ||||||| |||| ||| ||||||| |||||| ||||||||||||||||| ||||||| ||||||||| | || | |
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| T |
11081450 |
acattggaatcgaaggatgaacttaaccggtaacctacataggatttctagaatgagatcggaaggaagagtggtagacacacgaaggtgctttcctgat |
11081351 |
T |
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| Q |
101 |
acaaccgagagatgattgttgatggaagttgtttcctctgtcgtaga |
147 |
Q |
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| T |
11081350 |
acaatcgagaggtgattgttgatggaagttgtttcctctatcgtaga |
11081304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 519 - 584
Target Start/End: Original strand, 23976449 - 23976514
Alignment:
| Q |
519 |
aataataactttaatattttgacatatacaacaatgacatgtagcttgatgaaaaatagttaatat |
584 |
Q |
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|||||| ||||| |||||||||||||||||||| | |||||||| || ||| |||||||||||| |
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| T |
23976449 |
aataatgactttcatattttgacatatacaacactaacatgtagtttagcgaataatagttaatat |
23976514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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