View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2200_high_4 (Length: 463)

Name: NF2200_high_4
Description: NF2200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2200_high_4
NF2200_high_4
[»] chr1 (9 HSPs)
chr1 (6-339)||(7263886-7264228)
chr1 (365-463)||(52336210-52336308)
chr1 (368-463)||(14366121-14366216)
chr1 (368-463)||(21527709-21527804)
chr1 (368-455)||(9528250-9528337)
chr1 (368-454)||(4644570-4644656)
chr1 (368-463)||(48266215-48266310)
chr1 (365-463)||(47115835-47115934)
chr1 (369-426)||(36928752-36928809)
[»] chr6 (2 HSPs)
chr6 (368-463)||(1682588-1682683)
chr6 (368-463)||(33629646-33629741)
[»] chr5 (1 HSPs)
chr5 (368-463)||(10487403-10487498)
[»] chr4 (6 HSPs)
chr4 (368-463)||(3130476-3130571)
chr4 (368-457)||(5817678-5817767)
chr4 (368-463)||(47540473-47540568)
chr4 (368-463)||(8655570-8655665)
chr4 (368-438)||(23279180-23279250)
chr4 (369-421)||(1121142-1121194)
[»] chr7 (1 HSPs)
chr7 (368-463)||(9546285-9546380)
[»] chr3 (3 HSPs)
chr3 (368-463)||(49732430-49732525)
chr3 (368-463)||(32004528-32004623)
chr3 (368-463)||(13448027-13448122)
[»] chr8 (1 HSPs)
chr8 (368-463)||(19385207-19385302)
[»] scaffold0220 (1 HSPs)
scaffold0220 (368-463)||(22710-22805)
[»] scaffold0029 (1 HSPs)
scaffold0029 (368-463)||(135133-135228)
[»] scaffold0002 (2 HSPs)
scaffold0002 (368-463)||(312960-313055)
scaffold0002 (368-463)||(328414-328509)


Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 6 - 339
Target Start/End: Original strand, 7263886 - 7264228
Alignment:
Q  6 agtgagatgaagaaaaagactcttaacgtaattattctatgaatcatgctaagagcacaaattaaaaaggtaaaatcgaatgaaatgataagatttgtgc 105  Q
    ||||||| |||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||  |    
T  7263886 agtgagaggaagaaaaagact--taacgtaattattctatgaatcgtgctaagagcacaaattaaaaaggtaaaatcgaatgaaatgataaaatttgcac 7263983  T
Q  106 t-gaaacgataaatttttaagnnnnnnnnnn----------gtaaaggataaatttttaagttattaagtaaacgaatttcaagtaaatatttctatatt 194  Q
    | |||||||||||||||||||                    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  7263984 ttgaaacgataaatttttaagttttttttttttttttttttgtaaaggataaatttttaagttattaagtaaacgaatttcaagaaaatatttctatatt 7264083  T
Q  195 ttgttgaaaaatattgagacaaatgggtcctaaattattttcaaattaatattctaaatttctttatatttatatgttaatctttaccataaagtgagct 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  7264084 ttgttgaaaaatattgagacaaatgggtcctaaattattttcaaattaatattctaaatttctttatatttatattttaatctttaccataaagtgagct 7264183  T
Q  295 aaaaaagttatatttctgattcttattttgaattgaaatttttgt 339  Q
    ||||||||| |||||||||||||||||||||||||||||||||||    
T  7264184 aaaaaagttctatttctgattcttattttgaattgaaatttttgt 7264228  T

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Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 365 - 463
Target Start/End: Complemental strand, 52336308 - 52336210
Alignment:
Q  365 tatttttgtgtttggtactcaacagtggtggttttgtcctcttgtgtgtttgggtataggctgatgtagctctgttggattgattgttttgttgcaact 463  Q
    ||||||||||||||||||||| ||||||||||  || ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  52336308 tatttttgtgtttggtactcagcagtggtggtcatgccctcttgtgtgtttgggtataggctgatgtagctctgttgggttggttgttttgttgcaact 52336210  T

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Target: chr1; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 368 - 463
Target Start/End: Original strand, 14366121 - 14366216
Alignment:
Q  368 ttttgtgtttggtactcaacagtggtggttttgtcctcttgtgtgtttgggtataggctgatgtagctctgttggattgattgttttgttgcaact 463  Q
    |||||||||||||||||| ||||||||||  || ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||    
T  14366121 ttttgtgtttggtactcagcagtggtggtcatgccctcttgtgtgtttgggtataggctgatgtagctctgttgggttggttgttttgttgtaact 14366216  T

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Target: chr1; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 368 - 463
Target Start/End: Complemental strand, 21527804 - 21527709
Alignment:
Q  368 ttttgtgtttggtactcaacagtggtggttttgtcctcttgtgtgtttgggtataggctgatgtagctctgttggattgattgttttgttgcaact 463  Q
    |||||||||||||||||| |||||||||| ||| |||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||    
T  21527804 ttttgtgtttggtactcagcagtggtggtcttgccctcttatgtgtttgggtataggctgatgtagctctgttgggttgtttgttttgttgtaact 21527709  T

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Target: chr1; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 368 - 455
Target Start/End: Original strand, 9528250 - 9528337
Alignment:
Q  368 ttttgtgtttggtactcaacagtggtggttttgtcctcttgtgtgtttgggtataggctgatgtagctctgttggattgattgttttg 455  Q
    |||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||||| ||||||||| ||| ||||||||    
T  9528250 ttttgtgtttggtactcagcagtggtggtcttgtcctcttatgtgtttgggtataggctgatgtaactctgttgggttgtttgttttg 9528337  T

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Target: chr1; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 368 - 454
Target Start/End: Complemental strand, 4644656 - 4644570
Alignment:
Q  368 ttttgtgtttggtactcaacagtggtggttttgtcctcttgtgtgtttgggtataggctgatgtagctctgttggattgattgtttt 454  Q
    |||||||||||||||||| ||||||||||  || ||||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  4644656 ttttgtgtttggtactcagcagtggtggtcgtgccctcttgtgtgtttgggtataggctgatgtagctctgttgggttggttgtttt 4644570  T

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Target: chr1; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 368 - 463
Target Start/End: Original strand, 48266215 - 48266310
Alignment:
Q  368 ttttgtgtttggtactcaacagtggtggttttgtcctcttgtgtgtttgggtataggctgatgtagctctgttggattgattgttttgttgcaact 463  Q
    ||||||||||| |||| | ||||||||||  |  ||||||||||||||||||||||| ||||||||||||||||  ||| ||||||||||| ||||    
T  48266215 ttttgtgtttgatacttagcagtggtggtcataccctcttgtgtgtttgggtataggttgatgtagctctgttgtgttggttgttttgttgtaact 48266310  T

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Target: chr1; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 365 - 463
Target Start/End: Complemental strand, 47115934 - 47115835
Alignment:
Q  365 tatttttgtgtttggtactcaacagtggtggttttgtcctcttgtgtgtttgggtataggctgatgtagctctgttggattgattgt-tttgttgcaact 463  Q
    ||||||||  |||||||| || ||||||||||  || ||||||||||||||||||||||||| |||||||| |||||| ||| |||| ||||||| ||||    
T  47115934 tatttttgcttttggtacccagcagtggtggtcatgccctcttgtgtgtttgggtataggctaatgtagctttgttgggttggttgtatttgttgtaact 47115835  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 426
Target Start/End: Complemental strand, 36928809 - 36928752
Alignment:
Q  369 tttgtgtttggtactcaacagtggtggttttgtcctcttgtgtgtttgggtataggct 426  Q
    ||||| |||||||| ||||||||||||||  | |||||||| ||||||||||| ||||    
T  36928809 tttgtttttggtacccaacagtggtggttaagccctcttgtttgtttgggtattggct 36928752  T

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Target: chr6 (Bit Score: 76; Significance: 6e-35; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 368 - 463
Target Start/End: Complemental strand, 1682683 - 1682588
Alignment:
Q  368 ttttgtgtttggtactcaacagtggtggttttgtcctcttgtgtgtttgggtataggctgatgtagctctgttggattgattgttttgttgcaact 463  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||    
T  1682683 ttttgtgtttggtactcaacagtggtggtcatgtcctcttgtgtgtttgggtataggctcatgtagctctgttggattggttgttttgttgtaact 1682588  T

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Target: chr6; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 368 - 463
Target Start/End: Complemental strand, 33629741 - 33629646
Alignment:
Q  368 ttttgtgtttggtactcaacagtggtggttttgtcctcttgtgtgtttgggtataggctgatgtagctctgttggattgattgttttgttgcaact 463  Q
    |||||||||||||||||||||||||||||  || ||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||| ||||    
T  33629741 ttttgtgtttggtactcaacagtggtggtcatgccctcttgtgtgtttgagtataggctgatgtagctctgttgggttggttgttttgttgtaact 33629646  T

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Target: chr5 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 368 - 463
Target Start/End: Original strand, 10487403 - 10487498
Alignment:
Q  368 ttttgtgtttggtactcaacagtggtggttttgtcctcttgtgtgtttgggtataggctgatgtagctctgttggattgattgttttgttgcaact 463  Q
    ||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||    
T  10487403 ttttgtgtttggtactcaacagtggtggtcttgccctcttatgtgtttgggtataggctgatgtagctctgttgggttgtttgttttgttgtaact 10487498  T

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Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 368 - 463
Target Start/End: Original strand, 3130476 - 3130571
Alignment:
Q  368 ttttgtgtttggtactcaacagtggtggttttgtcctcttgtgtgtttgggtataggctgatgtagctctgttggattgattgttttgttgcaact 463  Q
    ||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||    
T  3130476 ttttgtgtttgatactcaacagtggtggtcttgccctcttgtgtgtttgggtataggctgatgtagctctgttgggttggttgttttgttgtaact 3130571  T

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Target: chr4; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 368 - 457
Target Start/End: Original strand, 5817678 - 5817767
Alignment:
Q  368 ttttgtgtttggtactcaacagtggtggttttgtcctcttgtgtgtttgggtataggctgatgtagctctgttggattgattgttttgtt 457  Q
    |||||||||||||||||| |||||||||| ||| |||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  5817678 ttttgtgtttggtactcagcagtggtggtcttgccctcttatgtgtttgggtataggctgatgtagctctgttgggttgtttgttttgtt 5817767  T

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Target: chr4; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 368 - 463
Target Start/End: Complemental strand, 47540568 - 47540473
Alignment:
Q  368 ttttgtgtttggtactcaacagtggtggttttgtcctcttgtgtgtttgggtataggctgatgtagctctgttggattgattgttttgttgcaact 463  Q
    |||||||||||||||||| ||||||||||  || ||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||| ||||    
T  47540568 ttttgtgtttggtactcagcagtggtggtcatgccctcttgtgtgtttgggtataggctgatgtaactctgttgggttggttgttttgttgtaact 47540473  T

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Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 368 - 463
Target Start/End: Original strand, 8655570 - 8655665
Alignment:
Q  368 ttttgtgtttggtactcaacagtggtggttttgtcctcttgtgtgtttgggtataggctgatgtagctctgttggattgattgttttgttgcaact 463  Q
    |||||||||||||||||| |||||||||| ||  |||||  ||||||||||||||||||||||||| | |||||| ||| ||||||||||| ||||    
T  8655570 ttttgtgtttggtactcagcagtggtggtcttaccctctcatgtgtttgggtataggctgatgtagttatgttgggttgtttgttttgttgtaact 8655665  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 368 - 438
Target Start/End: Complemental strand, 23279250 - 23279180
Alignment:
Q  368 ttttgtgtttggtactcaacagtggtggttttgtcctcttgtgtgtttgggtataggctgatgtagctctg 438  Q
    |||||| || ||||| ||||||||||||| ||| |||||||| |||||||||||||| | |||| ||||||    
T  23279250 ttttgttttcggtacccaacagtggtggtcttgccctcttgtttgtttgggtataggttaatgttgctctg 23279180  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 421
Target Start/End: Original strand, 1121142 - 1121194
Alignment:
Q  369 tttgtgtttggtactcaacagtggtggttttgtcctcttgtgtgtttgggtat 421  Q
    ||||| |||||||| |||||||||||||  || |||||||| |||||||||||    
T  1121142 tttgtttttggtacccaacagtggtggtcatgccctcttgtttgtttgggtat 1121194  T

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Target: chr7 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 368 - 463
Target Start/End: Complemental strand, 9546380 - 9546285
Alignment:
Q  368 ttttgtgtttggtactcaacagtggtggttttgtcctcttgtgtgtttgggtataggctgatgtagctctgttggattgattgttttgttgcaact 463  Q
    |||||||||||||||||| |||||||||| ||| |||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||    
T  9546380 ttttgtgtttggtactcagcagtggtggtcttgccctcttatgtgtttgggtataggctgatgtagctctgttgggttgtttgttttgttgtaact 9546285  T

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Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 368 - 463
Target Start/End: Original strand, 49732430 - 49732525
Alignment:
Q  368 ttttgtgtttggtactcaacagtggtggttttgtcctcttgtgtgtttgggtataggctgatgtagctctgttggattgattgttttgttgcaact 463  Q
    |||||||||||||||||| ||||||||||  || ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||    
T  49732430 ttttgtgtttggtactcagcagtggtggtcatgccctcttgtgtgtttgggtataggctgatgtagctctgttgggttggttgttttgttgtaact 49732525  T

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Target: chr3; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 368 - 463
Target Start/End: Complemental strand, 32004623 - 32004528
Alignment:
Q  368 ttttgtgtttggtactcaacagtggtggttttgtcctcttgtgtgtttgggtataggctgatgtagctctgttggattgattgttttgttgcaact 463  Q
    |||||||||||||||||| ||||||||||  || |||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||| ||||    
T  32004623 ttttgtgtttggtactcagcagtggtggtcatgccctcttgtatgtttgggtataggctgatgtagctctgttgggttggttgttttgttgtaact 32004528  T

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Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 368 - 463
Target Start/End: Complemental strand, 13448122 - 13448027
Alignment:
Q  368 ttttgtgtttggtactcaacagtggtggttttgtcctcttgtgtgtttgggtataggctgatgtagctctgttggattgattgttttgttgcaact 463  Q
    ||||||||||||||||||||||||||||| |||  |||||||||||||| ||||||| ||||||||||||||||| ||| ||||||| ||| ||||    
T  13448122 ttttgtgtttggtactcaacagtggtggtcttgctctcttgtgtgtttgagtataggttgatgtagctctgttgggttggttgttttattgtaact 13448027  T

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Target: chr8 (Bit Score: 64; Significance: 8e-28; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 368 - 463
Target Start/End: Original strand, 19385207 - 19385302
Alignment:
Q  368 ttttgtgtttggtactcaacagtggtggttttgtcctcttgtgtgtttgggtataggctgatgtagctctgttggattgattgttttgttgcaact 463  Q
    ||||||||| |||||||| ||||||||||  || ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||    
T  19385207 ttttgtgttcggtactcagcagtggtggtcatgccctcttgtgtgtttgggtataggctgatgtagctctgttgggttggttgttttgttgtaact 19385302  T

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Target: scaffold0220 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 368 - 463
Target Start/End: Original strand, 22710 - 22805
Alignment:
Q  368 ttttgtgtttggtactcaacagtggtggttttgtcctcttgtgtgtttgggtataggctgatgtagctctgttggattgattgttttgttgcaact 463  Q
    |||||||||||||||||| |||||||||| ||| |||||| ||| ||||||||||||||||| ||| |||||||| ||| ||||||||||| ||||    
T  22710 ttttgtgtttggtactcagcagtggtggtcttgccctcttatgtatttgggtataggctgatatagttctgttgggttgtttgttttgttgtaact 22805  T

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Target: scaffold0029 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 368 - 463
Target Start/End: Original strand, 135133 - 135228
Alignment:
Q  368 ttttgtgtttggtactcaacagtggtggttttgtcctcttgtgtgtttgggtataggctgatgtagctctgttggattgattgttttgttgcaact 463  Q
    |||||||||||||||||| |||||||||| ||| |||||  ||||||||||||||||||||||||  | |||||| ||| ||||||||||| ||||    
T  135133 ttttgtgtttggtactcagcagtggtggtcttgccctctcatgtgtttgggtataggctgatgtaattatgttgggttgtttgttttgttgtaact 135228  T

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Target: scaffold0002 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 368 - 463
Target Start/End: Original strand, 312960 - 313055
Alignment:
Q  368 ttttgtgtttggtactcaacagtggtggttttgtcctcttgtgtgtttgggtataggctgatgtagctctgttggattgattgttttgttgcaact 463  Q
    |||||||||||||||||| |||||||||| ||| |||||  ||||||||||||||||||||||||  | |||||| ||| ||||||||||| ||||    
T  312960 ttttgtgtttggtactcagcagtggtggtcttgccctctcatgtgtttgggtataggctgatgtaattatgttgggttgtttgttttgttgtaact 313055  T

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Target: scaffold0002; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 368 - 463
Target Start/End: Original strand, 328414 - 328509
Alignment:
Q  368 ttttgtgtttggtactcaacagtggtggttttgtcctcttgtgtgtttgggtataggctgatgtagctctgttggattgattgttttgttgcaact 463  Q
    |||||||||||||||||| |||||||||| ||| |||||  ||||||||||||||||||||||||  | |||||| ||| ||||||||||| ||||    
T  328414 ttttgtgtttggtactcagcagtggtggtcttgccctctcatgtgtttgggtataggctgatgtaattatgttgggttgtttgttttgttgtaact 328509  T

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