View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2200_high_7 (Length: 347)
Name: NF2200_high_7
Description: NF2200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2200_high_7 |
 | |
|
| [»] scaffold0941 (1 HSPs) |
| | |
|
| [»] scaffold0098 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0941 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: scaffold0941
Description:
Target: scaffold0941; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 334
Target Start/End: Complemental strand, 1517 - 1184
Alignment:
| Q |
1 |
tgtgatataaggctttgattttgaactcttcagcaatgcagctctcttttcagctttcttagnnnnnnnacttgtcaccatctgaactccatgctcatca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||| |
|
|
| T |
1517 |
tgtgatataaggctttgattttgaactcttcagcaatgcagctctcttttcagctttcttagttgttttacttgtcaccatctgaaattcatgctcatca |
1418 |
T |
|
| Q |
101 |
acttctggaactgaattatctgcttgtttagacatggcttgctgtgctggtaatttaccatacaagtttctatttggactgctgggattgcctgcatcag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
1417 |
acttctggaactgaattatctgcttgtttagacatggcttgctgtgctggtaatttaccatacaagttcctatttggactgctgggattgcctgcatcag |
1318 |
T |
|
| Q |
201 |
tttgttgtgcattatcatcaagtaaatcatcagttggttccatctcctcaagatttgcccaagaatcttttagaaagtttatgtctttttgcacaatttc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1317 |
tttgttgtgcattatcatcaagtaaatcatcagttggttccatctcctcaagatttgcccaagaatcttttagaaagtttatgtctttttgcacaatttc |
1218 |
T |
|
| Q |
301 |
ctgtacttcatcttcatagtctgaactgtcattc |
334 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
1217 |
ctgtacttcatcttcatagtctgaactgtcattc |
1184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0098 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: scaffold0098
Description:
Target: scaffold0098; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 334
Target Start/End: Original strand, 36601 - 36946
Alignment:
| Q |
1 |
tgtgatataaggctttgattttgaactcttcagcaatgcagctctcttttcagctttcttagnnnnnnnacttgtcaccatctgaactccatgctcatca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
36601 |
tgtgatataaggctttgattttgaactcttcaacaatgcagctctcttttcagctttcttagttgttttacttgtcaccatctgaaatccatgctcatca |
36700 |
T |
|
| Q |
101 |
acttctggaactgaattatctgcttgtttagacatggcttgctgtgctggtaatttaccatacaagtttctatttgga------------ctgctgggat |
188 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| || ||||||| || |
|
|
| T |
36701 |
acttctggaactgaattatctgcttgtttagacatggcttgctgtgctagtaatttaccagacaagtttctatttagaacagtgacaaggctgctggaat |
36800 |
T |
|
| Q |
189 |
tgcctgcatcagtttgttgtgcattatcatcaagtaaatcatcagttggttccatctcctcaagatttgcccaagaatcttttagaaagtttatgtcttt |
288 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
36801 |
tgcctgcaacaatttgttgtgcattatcatcaagtaagtcatcagttggttccatctcctcaagatttgcccaagaatcttttagaaagttgatgtcttt |
36900 |
T |
|
| Q |
289 |
ttgcacaatttcctgtacttcatcttcatagtctgaactgtcattc |
334 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
36901 |
ttgcacaatttcctgaacttcatcttcattgtctgaactgtcattc |
36946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 166
Target Start/End: Original strand, 15091026 - 15091122
Alignment:
| Q |
70 |
acttgtcaccatctgaactccatgctcatcaacttctggaactgaattatctgcttgtttagacatggcttgctgtgctggtaatttaccatacaag |
166 |
Q |
| |
|
|||||||||||| |||| || || ||||||||||| |||| ||| | |||||||| ||||||||| ||||||| | ||||| |||||||||||| |
|
|
| T |
15091026 |
acttgtcaccatttgaaagccctggtcatcaacttcaggaattgagtcatctgcttctttagacatttcttgctgcacaggtaacttaccatacaag |
15091122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University