View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2200_low_10 (Length: 256)
Name: NF2200_low_10
Description: NF2200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2200_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 66 - 246
Target Start/End: Original strand, 32574678 - 32574858
Alignment:
| Q |
66 |
taaaacgcaacaacacttgttagcatttgtcaataattatctagttctaccctttaaggactattttaatttaannnnnnncaatcaagacaactcatca |
165 |
Q |
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|||||||| ||||||||||||| ||||| |||| ||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||| |
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| T |
32574678 |
taaaacgcgacaacacttgttatcatttctcaagaattatcaagttctacagtttaaggactattttaatttaatttttttcaatcaagacaactcatca |
32574777 |
T |
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| Q |
166 |
atgtgaaaatatttcgtgtaacactatctctcagagttctcgatctcgatctcgctaattcgtcatttctcttgcttcatc |
246 |
Q |
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| T |
32574778 |
atgtgaaaatattttgtgtaacaccatctcccagagttctcgatctcgatctcgctcattcgtcatttctcttgcttcatc |
32574858 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 32458050 - 32458104
Alignment:
| Q |
5 |
actttatcaatttaaaatgaatgaatatcatttattttatcaaaagaataaaaaatt |
61 |
Q |
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| T |
32458050 |
actttatcaatttaaa-tgaatgaatatgatttattttgtcaaaa-aataaaaaatt |
32458104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 5328355 - 5328408
Alignment:
| Q |
4 |
tactttatcaatttaaaatgaatgaatatcatttattttatcaaaagaataaaaa |
58 |
Q |
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| T |
5328355 |
tactctatcaatttaaaa-gaatgaatatcatttattttgtcaaaaaaaaaaaaa |
5328408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 16644735 - 16644771
Alignment:
| Q |
1 |
atatactttatcaatttaaaatgaatgaatatcattt |
37 |
Q |
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| T |
16644735 |
atatactctatcaatttgaaatgaatgaatatcattt |
16644771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 42
Target Start/End: Complemental strand, 23732100 - 23732063
Alignment:
| Q |
4 |
tactttatcaatttaaaatgaatgaatatcatttatttt |
42 |
Q |
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| T |
23732100 |
tactttatcaatttaaa-tgaatgaatatcatttatttt |
23732063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 29576830 - 29576790
Alignment:
| Q |
1 |
atatactttatcaatttaaaatgaatgaatatcatttatttt |
42 |
Q |
| |
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||||||||||||||||| || ||||||||||||||||||||| |
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| T |
29576830 |
atatactttatcaatttgaa-tgaatgaatatcatttatttt |
29576790 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 6886884 - 6886829
Alignment:
| Q |
4 |
tactttatcaatttaaaatgaatgaatatcatttattttatcaaaagaataaaaaat |
60 |
Q |
| |
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|||| |||||||||||| |||||||||||| |||||||| |||||| || ||||||| |
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| T |
6886884 |
tactctatcaatttaaa-tgaatgaatatcttttattttgtcaaaaaaaaaaaaaat |
6886829 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 45664629 - 45664684
Alignment:
| Q |
4 |
tactttatcaatttaaaatgaatgaatatcattta-ttttatcaaaagaataaaaaa |
59 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||||| ||||||||||| || |||||| |
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| T |
45664629 |
tactctatcaatttaaa-tgaatgaatatcatttatttttatcaaaaaaaaaaaaaa |
45664684 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 28413467 - 28413424
Alignment:
| Q |
1 |
atatactttatcaatttaaaatgaatgaatatcatttattttatc |
45 |
Q |
| |
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|||||||||||||| ||||| | |||||||||||||||||||||| |
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| T |
28413467 |
atatactttatcaacttaaa-tcaatgaatatcatttattttatc |
28413424 |
T |
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