View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2200_low_12 (Length: 243)
Name: NF2200_low_12
Description: NF2200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2200_low_12 |
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| [»] scaffold0941 (1 HSPs) |
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| [»] scaffold0098 (2 HSPs) |
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Alignment Details
Target: scaffold0941 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: scaffold0941
Description:
Target: scaffold0941; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 1580 - 1805
Alignment:
| Q |
1 |
ttagctaattctcctacaaaattagctcttaaaaaactattatctaaatataaacctgatgtttgtttcatttctgaaccttggatgcttgtgtctgatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1580 |
ttagctaattctcctacaaaattagctcttaaaaaactattatctaaatataaacctgatgtttgtttcatttctgaaccttggatgcttgtgtctgatt |
1679 |
T |
|
| Q |
101 |
tgtcacctagatggcttcttaatctaggtcttaaagtgttttgtgttaatgatagaaactctttaatccctaatctctggtgtttatgtccaattcatct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
1680 |
tgtcacctagatggcttcttaatctaggtcttaaagtgttttgtgttaatgatagaaactctttaatccctaatctctggtgtttatgttcaattcatct |
1779 |
T |
|
| Q |
201 |
ttccccaaacttaattagtgttgatg |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
1780 |
ttccccaaacttaattagtgttgatg |
1805 |
T |
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Target: scaffold0098 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: scaffold0098
Description:
Target: scaffold0098; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 36538 - 36425
Alignment:
| Q |
1 |
ttagctaattctcctacaaaattagctcttaaaaaactattatctaaatataaacctgatgtttgtttcatttctgaaccttggatgcttgtgtctgatt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||| ||||||||||||||||||| |
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| T |
36538 |
ttagctaattctcctacaaaattagctcttaaaaaactattatttacatataaacctgatgtttgtttcatttatgaaccctggatgcttgtgtctgatt |
36439 |
T |
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| Q |
101 |
tgtcacctagatgg |
114 |
Q |
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|||||||||||||| |
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| T |
36438 |
tgtcacctagatgg |
36425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0098; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 109 - 226
Target Start/End: Complemental strand, 33533 - 33416
Alignment:
| Q |
109 |
agatggcttcttaatctaggtcttaaagtgttttgtgttaatgatagaaactctttaatccctaatctctggtgtttatgtccaattcatctttccccaa |
208 |
Q |
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||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||| | |
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| T |
33533 |
agatggctttataatctaggtctcaaagtgttttgtgttaatgatagaaactctttaatccctaatctctggtgtctatgttcaattaatctttccccga |
33434 |
T |
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| Q |
209 |
acttaattagtgttgatg |
226 |
Q |
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|||||||||||||||||| |
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| T |
33433 |
acttaattagtgttgatg |
33416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 15090894 - 15090689
Alignment:
| Q |
1 |
ttagctaattctcctacaaaattagctcttaaaaaactattatctaaatataaacctgatgtttgtttcatttctgaaccttggatgcttgtgtctgatt |
100 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||| ||||||||||||| ||||| ||| |||| || || |||||||| |||||||| |||||| || |
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| T |
15090894 |
ttagctaattcacctacgaaattagctcttaaaaaattattatctaaatacaaaccagatatttgctttatatctgaaccctggatgctggtgtctaatc |
15090795 |
T |
|
| Q |
101 |
tgtcacctagatggcttcttaatctaggtcttaaagtgttttgtgttaatgatagaaactctttaatccctaatctctggtgtttatgtccaattcatct |
200 |
Q |
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| || |||||||||||| ||||||||||| | |||||||||||| | |||| || ||||| || |||||||| |||||| | ||| | |||||| | |
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| T |
15090794 |
tatcttctagatggcttcaaaatctaggtctcagagtgttttgtgtcaccaataggaattctttgattcctaatctttggtgtctgtgttccattcatat |
15090695 |
T |
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| Q |
201 |
ttcccc |
206 |
Q |
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|||||| |
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|
| T |
15090694 |
ttcccc |
15090689 |
T |
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