View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2200_low_2 (Length: 528)
Name: NF2200_low_2
Description: NF2200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2200_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 382; Significance: 0; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 11 - 492
Target Start/End: Complemental strand, 9829477 - 9828999
Alignment:
| Q |
11 |
cataggggaaagcatcagcaaagtattccaacaaatgatgatgatgaattagaagaggattcgacatacagtgaggaaggaaacaatattgattttattg |
110 |
Q |
| |
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|||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9829477 |
cataagggtaagcatctgcaaagtattccaacaaatgatgatgatgaattagaagaggattcgacatacagtgaggaaggaaacaatattgattttattg |
9829378 |
T |
|
| Q |
111 |
gtgatgattttgatgcatctgattgtgaagacatgtctaataattcactagatgggtctaatagtgacgcggaatctaatacgagtaacaagaattctaa |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9829377 |
gtgatgattttgatgcatctgattgtgaagacatgtctaataattcactagatgggtctaatagtgacgcggaatctaatacgagtaacaagaattctaa |
9829278 |
T |
|
| Q |
211 |
ttttcaagatgtatttgatatgcaaggtagtcaatgtaattctctgtcaacgtgttctgcagcagaaaagggaaagaatttgtactccaattatgatcaa |
310 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9829277 |
ttttcaagatgtatctgatatgcaaggtagtcaatgtaattctctgtcaacgtgttctgcagcagaaaagggaaagaatttgtactccaattatgatcaa |
9829178 |
T |
|
| Q |
311 |
agcaataaggaagattctgattttgttgaagatctcttatgtgctgtaataccgaaaaggaaacggactcataatgtctttattagtgagtatgaaannn |
410 |
Q |
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| T |
9829177 |
agcaacgaggaagattctgattttgttgaagatctcttatgtgctgtaattccgaaaaggaaacggactcgtaatgtctttattagtgagtatgaaa--- |
9829081 |
T |
|
| Q |
411 |
nnnnnnnnnnnnnnaaaccgatttgtaaacttatatggaatcgtgttcaggaaagaagtgctgacgagttagtaaatgttgt |
492 |
Q |
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| T |
9829080 |
atgatgatgatgataaaccgattagtaaacttataaggaatcgtgttcaggaaagaagtgctgatgagttagtaaatgttgt |
9828999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 10 - 407
Target Start/End: Complemental strand, 9756022 - 9755629
Alignment:
| Q |
10 |
gcataggggaaagcatcagcaaagtattccaacaaatgatgatgatgaattagaagaggattcgacatacagtgaggaaggaaacaatattgattttatt |
109 |
Q |
| |
|
||||| ||| |||||| || |||| || ||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||| | |||||||||| |
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| T |
9756022 |
gcataagggcaagcattggcgaagtttttcaacaaacgatgatgatgaactagaagaggatttgacatacagtgaggaaggaaacatgaatgattttatt |
9755923 |
T |
|
| Q |
110 |
ggtgatgattttgatgcatctgattgtgaagacatgtctaataattcactagatgggtctaatagtgacgcggaatctaatacgagtaacaagaattcta |
209 |
Q |
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| T |
9755922 |
gttgatgattttgatgcatctgattgtgaaggcatgtctaatacttcacaagatgagtctaatagtgacgcagaat----tactagtaacaagaactctt |
9755827 |
T |
|
| Q |
210 |
attttcaagatgtatttgatatgcaaggtagtcaatgtaattctctgtcaacgtgttctgcagcagaaaagggaaagaatttgtactccaattatgatca |
309 |
Q |
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| T |
9755826 |
attttcaagatgtgtctgatatgcaaggcagtgaatatatttctcagtcaacatgttctgcaacaaaaaagggaaagaatttgtactccaattatgatca |
9755727 |
T |
|
| Q |
310 |
aagcaataaggaagattctgattttgttgaagatctcttatgtgctgtaataccgaaaaggaaacggactcataatgtctttattagtgagtatgaaa |
407 |
Q |
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||||| | ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||||| ||||||| ||||| |
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| T |
9755726 |
aagcagtgaggaagattctgattttgttgaagatctcttatgtgctgtaattccaaaaaggaaacggactcgtaatgtctttataagtgagtctgaaa |
9755629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 73 - 334
Target Start/End: Complemental strand, 9814122 - 9813864
Alignment:
| Q |
73 |
gacatacagtgaggaaggaaacaatattgattttattggtgatgattttgatgcatctgattgtgaagacatgtctaataattcactagatgggtctaat |
172 |
Q |
| |
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|||| ||| |||||||| |||||||| ||||||||||| || |||||||||||||||||||||||| ||||||||||||||||| ||||| ||||| |
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| T |
9814122 |
gacacacaatgaggaagaaaacaatagtgattttattg---attattttgatgcatctgattgtgaaggcatgtctaataattcacgagatgagtctagc |
9814026 |
T |
|
| Q |
173 |
agtgacgcggaatctaatacgagtaacaagaattctaattttcaagatgtatttgatatgcaaggtagtcaatgtaattctctgtcaacgtgttctgcag |
272 |
Q |
| |
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|||||||| ||||||| | || ||| |||| ||||| |||| |||||||||| |||||||||||||||| | ||| |||||||||||| |||||||| |
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| T |
9814025 |
agtgacgcagaatctagttcgtgtagcaaggattcttatttgcaagatgtatctgatatgcaaggtagtggaagtatttctctgtcaacaaattctgcag |
9813926 |
T |
|
| Q |
273 |
cagaaaagggaaagaatttgtactccaattatgatcaaagcaataaggaagattctgatttt |
334 |
Q |
| |
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||||||||||||||||||| ||||||||||| ||||||| |||| | ||| | ||||||||| |
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| T |
9813925 |
cagaaaagggaaagaatttttactccaattaggatcaaatcaatgacgaaaaatctgatttt |
9813864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 24 - 177
Target Start/End: Complemental strand, 9708628 - 9708475
Alignment:
| Q |
24 |
atcagcaaagtattccaacaaatgatgatgatgaattagaagaggattcgacatacagtgaggaaggaaacaatattgattttattggtgatgattttga |
123 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||| ||| || ||||| | |||| |||||||||| ||| || ||||||||||| ||||||| |||| |
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| T |
9708628 |
atcagcagagtattccaaaaaatgatgatgatgacctaggagtggatttgtcatatagtgaggaagataaccttagtgattttattgttgatgatgttga |
9708529 |
T |
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| Q |
124 |
tgcatctgattgtgaagacatgtctaataattcactagatgggtctaatagtga |
177 |
Q |
| |
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||||||||||||||||||||| ||| |||| |||| || | |||||||||||| |
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| T |
9708528 |
tgcatctgattgtgaagacatatctgataagtcacaggaagagtctaatagtga |
9708475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 194 - 334
Target Start/End: Complemental strand, 9804250 - 9804111
Alignment:
| Q |
194 |
agtaacaagaattctaattttcaagatgtatttgatatgcaaggtagtcaatgtaattctctgtcaacgtgttctgcagcagaaaagggaaagaatttgt |
293 |
Q |
| |
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|||| |||| ||||| |||| || ||||||| ||| |||||||||||| | ||| ||||||| |||| ||||||||||||||||| | ||||| || | |
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| T |
9804250 |
agtagcaaggattcttatttgcaggatgtatctgaaatgcaaggtagtggaggtatttctctgccaacaagttctgcagcagaaaagcg-aagaactttt |
9804152 |
T |
|
| Q |
294 |
actccaattatgatcaaagcaataaggaagattctgatttt |
334 |
Q |
| |
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|||||||||||||||||| |||| ||||| |||||||||| |
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| T |
9804151 |
actccaattatgatcaaaacaatgaggaaatttctgatttt |
9804111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 435 - 492
Target Start/End: Complemental strand, 9755592 - 9755535
Alignment:
| Q |
435 |
gtaaacttatatggaatcgtgttcaggaaagaagtgctgacgagttagtaaatgttgt |
492 |
Q |
| |
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|||||||| || |||||| ||||||||||||||||||||||||||| ||||||||||| |
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| T |
9755592 |
gtaaacttgtaaggaatcatgttcaggaaagaagtgctgacgagttggtaaatgttgt |
9755535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 140
Target Start/End: Complemental strand, 9755380 - 9755264
Alignment:
| Q |
24 |
atcagcaaagtattccaacaaatgatgatgatgaattagaagaggattcgacatacagtgaggaaggaaacaatattgattttattggtgatgattttga |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| | |||||| | || | ||||||||||||||| | | |||||||| |||||||||||| |
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| T |
9755380 |
atcagcaaagtattccaacaaatgatgatgctgaatcaatagaggacttatcacaaagtgaggaaggaaacttgaaaggttttattgttgatgattttga |
9755281 |
T |
|
| Q |
124 |
tgcatctgattgtgaag |
140 |
Q |
| |
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| ||||| |||||||| |
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| T |
9755280 |
tttatctggttgtgaag |
9755264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 140
Target Start/End: Complemental strand, 9828855 - 9828739
Alignment:
| Q |
24 |
atcagcaaagtattccaacaaatgatgatgatgaattagaagaggattcgacatacagtgaggaaggaaacaatattgattttattggtgatgattttga |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| | |||||| | || | ||||||||||||||| | | |||||||| |||||||||||| |
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| T |
9828855 |
atcagcaaagtattccaacaaatgatgatgctgaatcaatagaggacttatcacaaagtgaggaaggaaactcgaaaggttttattgttgatgattttga |
9828756 |
T |
|
| Q |
124 |
tgcatctgattgtgaag |
140 |
Q |
| |
|
|| |||| |||||||| |
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|
| T |
9828755 |
tgtatctagttgtgaag |
9828739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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