View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2200_low_3 (Length: 513)
Name: NF2200_low_3
Description: NF2200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2200_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 18 - 503
Target Start/End: Original strand, 7464311 - 7464800
Alignment:
| Q |
18 |
aagcttttataagttgtattctatgttctaggtgaaaattgattggttcatagtaatatgatagaaattcttcagtgtcttttttactgtaaaaa-tatg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
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| T |
7464311 |
aagcttttataagttgtattctatgttctaggtgaaaattgattggttcatagtaatatgatagaaattcttcagtgtctttgttactgtaaaaaatatg |
7464410 |
T |
|
| Q |
117 |
atagcatttcaaaataagcattgaatttggatgagaactgtgaatttcaattaacagatgctgttgctagaaatcagactgtcaaattgtgttagggctt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
7464411 |
atagcatttcaaaataagcattgaatttggatgagaactgtgaatttcaattaacagatgctgttgctagaaatcagactgtaaaattgtgttagggctt |
7464510 |
T |
|
| Q |
217 |
gtttgggannnnnnnn---gttgagaaaaaactannnnnnnaacccataaattacttttattattttagtagtgtgtgtttgtgttnnnnnnngcatttt |
313 |
Q |
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|||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
7464511 |
gtttgggatttttttttttgttgagaaaaaactatttttttaacccataaattacttttattattttagtagtgtgtgtttgtgttaaaaaaagcatttt |
7464610 |
T |
|
| Q |
314 |
taaccttaaaataaaaaagccattcctagtagtagcttttctagaaacaaggaacttgaatgtaagattctctaaacaaatctgtagannnnnnnaaacc |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
7464611 |
taaccttaaaataaaaaagccattcctagtagtagcttttctagaaacaaggaacttgaatgtaagattctctaaacaaatctgtagatttttttaaacc |
7464710 |
T |
|
| Q |
414 |
aaacaaacgtaccattagtttactgcttagaaaaatgatttagtgttgcgttaaaattgattggagcttacattttatcttctgtctgtg |
503 |
Q |
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| T |
7464711 |
aaacaaacgtaccattagtttactgcttagaaaaatgatttagtgttgcgttaaaattgattggagcttacattttatcttctgtctgtg |
7464800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 434 - 498
Target Start/End: Complemental strand, 44934798 - 44934733
Alignment:
| Q |
434 |
tactgcttagaaaaa-tgatttagtgttgcgttaaaattgattggagcttacattttatcttctgt |
498 |
Q |
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||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
44934798 |
tactgcttagaaaaaatgatttagtgttgcgtaaaaattgattggagcttacattttatcttctgt |
44934733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 41262417 - 41262365
Alignment:
| Q |
142 |
tttggatgagaactgtgaatttcaattaacagatgctgttgctagaaatcaga |
194 |
Q |
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| T |
41262417 |
tttggatgagaactgtgaatttcaattaacaggtgtggctgctagaaatcaga |
41262365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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