View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2200_low_5 (Length: 453)

Name: NF2200_low_5
Description: NF2200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2200_low_5
NF2200_low_5
[»] chr1 (2 HSPs)
chr1 (9-410)||(17193947-17194335)
chr1 (401-437)||(17193884-17193920)
[»] chr7 (2 HSPs)
chr7 (142-410)||(9653740-9654008)
chr7 (404-437)||(9653677-9653710)
[»] chr4 (2 HSPs)
chr4 (142-410)||(13524765-13525033)
chr4 (404-437)||(13524702-13524735)
[»] chr2 (4 HSPs)
chr2 (145-410)||(19391242-19391503)
chr2 (404-437)||(19391179-19391212)
chr2 (146-203)||(22684895-22684952)
chr2 (217-294)||(22684794-22684870)
[»] scaffold2036 (1 HSPs)
scaffold2036 (166-312)||(375-520)


Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 9 - 410
Target Start/End: Complemental strand, 17194335 - 17193947
Alignment:
Q  9 gacatcatctatgtagggttggggttcaaacttcagacaacctctttattctccttaaaggtgaacttttccactagactgcttgatcnnnnnnntaaat 108  Q
    |||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||        |||     
T  17194335 gacatcatatatgtagggtcggggttcaaactccagacaacctctttattctccttaaaggtgaatttttccactagactacttgatcaa------aaaa 17194242  T
Q  109 atatgat--tatgattatgattcttttataagtatattttgaagcttgtattgctataggttcttgttttgatgatgttaggatatagtagtttataatt 206  Q
    | | ||   ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17194241 agaagaagctatgattatgattcttttagaagtatattttgaagcttgtattgctataggttcttgttttgatgatgttaggatatagtagtttataatt 17194142  T
Q  207 ccttgctaatgttttatttgttcgttgtttttgttcttagaaataaagcttaaaatcttgtgaaagcactcaccaatccatgtctcatgagttccttgtg 306  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  17194141 ccttgttaatgttttatttgttcgttgtttttgttcttagaaatatagcttaaaatcttgtgaaagcactcaccaatccatgtctc--gagttccttgtg 17194044  T
Q  307 tcttgcatggcacattgcatgaaaaccccttttttctcagcttgtgaatcgattcacaatcatctgaatcgtatgatcgaaagtctctaatttggggtga 406  Q
    ||||||||||||||||||||||||||||| |||||||||||      |||||||||||||||||||||||||||||| |||||||||| |||| ||||||    
T  17194043 tcttgcatggcacattgcatgaaaacccc-tttttctcagc------atcgattcacaatcatctgaatcgtatgatagaaagtctctgatttagggtga 17193951  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 401 - 437
Target Start/End: Complemental strand, 17193920 - 17193884
Alignment:
Q  401 gggtgaatcgagtcaaattactttgaatcgtatcaat 437  Q
    |||||||| ||||||||||||||||||||||||||||    
T  17193920 gggtgaattgagtcaaattactttgaatcgtatcaat 17193884  T

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Target: chr7 (Bit Score: 114; Significance: 1e-57; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 142 - 410
Target Start/End: Complemental strand, 9654008 - 9653740
Alignment:
Q  142 attttgaagcttgtattgctataggttcttgttttgatgatgttaggatatagtagtttataattccttgctaatgttttatttgttcgttgtttttgtt 241  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||  || ||||||||||||| ||||||| ||||    
T  9654008 attttgaagcttgtattgctttaggttcttgttttgatgatgttaggatatagcagtttatagttcctttatattgttttatttgttggttgtttatgtt 9653909  T
Q  242 cttagaaataaagcttaaaatcttgtgaaagcactcaccaatccatgtctcatgagttccttgtgtcttgcatggca-cattgcatgaaaaccccttttt 340  Q
    || || |||| ||| |||||||||||||||||||||| |||||||||||| ||| ||||||||||||||| || | |   ||||||| |   ||||||||    
T  9653908 ctaagcaatatagcataaaatcttgtgaaagcactcaacaatccatgtctaatgtgttccttgtgtcttggatagaatttttgcatgcatgacccttttt 9653809  T
Q  341 tctcagcttgtgaatcgattcacaatcatctgaatcgtatgatcgaaagtctctaatttggggtgaatcg 410  Q
    ||  ||||||||||||||||||     ||||||||||||| ||| ||||||||| | ||| |||||||||    
T  9653808 tc-aagcttgtgaatcgattcatccaaatctgaatcgtatcatcaaaagtctctgacttgaggtgaatcg 9653740  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 437
Target Start/End: Complemental strand, 9653710 - 9653677
Alignment:
Q  404 tgaatcgagtcaaattactttgaatcgtatcaat 437  Q
    |||||||||||||||||||||||||||| |||||    
T  9653710 tgaatcgagtcaaattactttgaatcgtttcaat 9653677  T

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Target: chr4 (Bit Score: 114; Significance: 1e-57; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 142 - 410
Target Start/End: Complemental strand, 13525033 - 13524765
Alignment:
Q  142 attttgaagcttgtattgctataggttcttgttttgatgatgttaggatatagtagtttataattccttgctaatgttttatttgttcgttgtttttgtt 241  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||  || ||||||||||||| ||||||| ||||    
T  13525033 attttgaagcttgtattgctttaggttcttgttttgatgatgttaggatatagcagtttatagttcctttatattgttttatttgttggttgtttatgtt 13524934  T
Q  242 cttagaaataaagcttaaaatcttgtgaaagcactcaccaatccatgtctcatgagttccttgtgtcttgcatggca-cattgcatgaaaaccccttttt 340  Q
    || || |||| ||| |||||||||||||||||||||| |||||||||||| ||| ||||||||||||||| || | |   ||||||| |   ||||||||    
T  13524933 ctaagcaatatagcataaaatcttgtgaaagcactcaacaatccatgtctaatgtgttccttgtgtcttggatagaatttttgcatgcatgacccttttt 13524834  T
Q  341 tctcagcttgtgaatcgattcacaatcatctgaatcgtatgatcgaaagtctctaatttggggtgaatcg 410  Q
    ||  ||||||||||||||||||     ||||||||||||| ||| ||||||||| | ||| |||||||||    
T  13524833 tc-aagcttgtgaatcgattcatccaaatctgaatcgtatcatcaaaagtctctgacttgaggtgaatcg 13524765  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 437
Target Start/End: Complemental strand, 13524735 - 13524702
Alignment:
Q  404 tgaatcgagtcaaattactttgaatcgtatcaat 437  Q
    |||||||||||||||||||||||||||| |||||    
T  13524735 tgaatcgagtcaaattactttgaatcgtttcaat 13524702  T

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Target: chr2 (Bit Score: 94; Significance: 1e-45; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 145 - 410
Target Start/End: Complemental strand, 19391503 - 19391242
Alignment:
Q  145 ttgaagcttgtattgctataggttcttgttttgatgatgttaggatatagtagtttataattccttgctaatgttttatttgttcgttgtttttgttctt 244  Q
    ||||||||||||||    |||||| ||||||||||||| |||||||||| ||||||||| ||| ||| |||||||      ||| |||||||||||||||    
T  19391503 ttgaagcttgtattagattaggtttttgttttgatgatattaggatataatagtttatagttctttgttaatgttaa----gttggttgtttttgttctt 19391408  T
Q  245 agaaataaagcttaaaatcttgtgaaagcactcaccaatccatgtctcatgagttccttgtgtcttgcatggcacattgcatgaa-aaccccttttttct 343  Q
    || |||| ||| ||||||||| |||||||| ||| |||||||||||||||| |||||||||||||||||| |||  ||||||||| ||||  |||| |||    
T  19391407 agcaatatagcataaaatcttatgaaagcaatcagcaatccatgtctcatgtgttccttgtgtcttgcatagcattttgcatgaataaccatttttctct 19391308  T
Q  344 cagcttgtgaatcgattcacaatcatctgaatcgtatgatcgaaagtctctaatttggggtgaatcg 410  Q
     ||||||| |||||||||||||| |||| ||||| || ||| ||||||||| | || ||||||||||    
T  19391307 -agcttgtcaatcgattcacaataatcttaatcgcatcatcaaaagtctctgacttagggtgaatcg 19391242  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 404 - 437
Target Start/End: Complemental strand, 19391212 - 19391179
Alignment:
Q  404 tgaatcgagtcaaattactttgaatcgtatcaat 437  Q
    ||||||||||||||||||||||||||||||||||    
T  19391212 tgaatcgagtcaaattactttgaatcgtatcaat 19391179  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 146 - 203
Target Start/End: Complemental strand, 22684952 - 22684895
Alignment:
Q  146 tgaagcttgtattgctataggttcttgttttgatgatgttaggatatagtagtttata 203  Q
    ||||||||| |||||| |||||||||||||| ||||||||||| ||||| | ||||||    
T  22684952 tgaagcttgcattgctttaggttcttgttttaatgatgttaggttatagaaatttata 22684895  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 294
Target Start/End: Complemental strand, 22684870 - 22684794
Alignment:
Q  217 gttttatttgttcgttgtttttgttcttagaaataaagcttaaaatcttgtgaaagcactcaccaatccatgtctcat 294  Q
    ||||||||| || |||||||| || ||||  |||| ||| ||||||||||| ||||||||||  ||||||||||||||    
T  22684870 gttttatttattggttgtttt-gtacttaacaatatagcataaaatcttgttaaagcactcataaatccatgtctcat 22684794  T

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Target: scaffold2036 (Bit Score: 79; Significance: 9e-37; HSPs: 1)
Name: scaffold2036
Description:

Target: scaffold2036; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 166 - 312
Target Start/End: Original strand, 375 - 520
Alignment:
Q  166 gttcttgttttgatgatgttaggatatagtagtttataattccttgctaatgttttatttgttcgttgtttttgttcttagaaataaagcttaaaatctt 265  Q
    |||||||||||| |||||||||||||||| |||||||| ||||||  | |||||||||||||| |||||||||  |||||  |||  ||| |||||||||    
T  375 gttcttgttttgctgatgttaggatatag-agtttatagttcctttatgatgttttatttgttggttgtttttactcttatcaatttagcataaaatctt 473  T
Q  266 gtgaaagcactcaccaatccatgtctcatgagttccttgtgtcttgc 312  Q
    ||||||||||||| |||||||||||||||| ||||||||||||||||    
T  474 gtgaaagcactcagcaatccatgtctcatgtgttccttgtgtcttgc 520  T

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