View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2200_low_9 (Length: 288)

Name: NF2200_low_9
Description: NF2200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2200_low_9
NF2200_low_9
[»] chr3 (8 HSPs)
chr3 (18-288)||(3745235-3745505)
chr3 (231-288)||(4142865-4142922)
chr3 (231-287)||(4158675-4158731)
chr3 (237-288)||(3753851-3753902)
chr3 (231-288)||(803952-804009)
chr3 (243-281)||(988687-988725)
chr3 (231-280)||(12132329-12132378)
chr3 (243-283)||(1931894-1931934)
[»] chr8 (2 HSPs)
chr8 (241-286)||(31145143-31145188)
chr8 (243-288)||(19727184-19727229)
[»] chr5 (3 HSPs)
chr5 (237-287)||(11081447-11081497)
chr5 (243-288)||(23764997-23765042)
chr5 (243-288)||(23814845-23814890)
[»] chr4 (1 HSPs)
chr4 (243-280)||(22672879-22672916)
[»] chr1 (1 HSPs)
chr1 (237-280)||(25611733-25611779)


Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 288
Target Start/End: Complemental strand, 3745505 - 3745235
Alignment:
Q  18 aggatgccgttgcaagagccaacgaagtcatgtaaaatggacagaggataatctccattgaaaccgttaggagaatactcaaaccgtgtggagttagatg 117  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||   |    
T  3745505 aggatgccgttgcaagagccaacgaagtcatgtaaaatggaccgaggataatctccattgaaaccgttaggagaatattcaaaccgtgtggagtta---g 3745409  T
Q  118 atgttatgtttgtgaaaatagagtccattggttcagataagagaatgtacttgcctaagtaacgggtgtggtcgtagagt---aagtggatgtttcgagc 214  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||    
T  3745408 atgttatgtttgtgaaaatagagtcgattggttcagataagagaatgtacttgcctaagtaacgggtgtggtcgtagagtaagaagtggatgtttcgagc 3745309  T
Q  215 agtagacacatgtaactgctttttgacaaatttgggatcagatattagagaattccatgacttgcaaacacatc 288  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3745308 agtagacacatttaactgctttttgacaaatttgggatcagatattagagaattccatgacttgcaaacacatc 3745235  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 231 - 288
Target Start/End: Original strand, 4142865 - 4142922
Alignment:
Q  231 tgctttttgacaaatttgggatcagatattagagaattccatgacttgcaaacacatc 288  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  4142865 tgcttcttgacgaatttgggatcagatattagagaattccatgacttgcaaacacatc 4142922  T

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Target: chr3; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 231 - 287
Target Start/End: Original strand, 4158675 - 4158731
Alignment:
Q  231 tgctttttgacaaatttgggatcagatattagagaattccatgacttgcaaacacat 287  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  4158675 tgcttcttgacgaatttgggatcagatattagagaattccatgacttgcaaacacat 4158731  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 237 - 288
Target Start/End: Complemental strand, 3753902 - 3753851
Alignment:
Q  237 ttgacaaatttgggatcagatattagagaattccatgacttgcaaacacatc 288  Q
    ||||| ||||| ||||| ||||||||| ||||||||||||||||||||||||    
T  3753902 ttgacgaattttggatcggatattagaaaattccatgacttgcaaacacatc 3753851  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 231 - 288
Target Start/End: Original strand, 803952 - 804009
Alignment:
Q  231 tgctttttgacaaatttgggatcagatattagagaattccatgacttgcaaacacatc 288  Q
    ||||||||| |||| |||| |||  |||||||||||||||||||||||||||| ||||    
T  803952 tgctttttggcaaagttggcatcgcatattagagaattccatgacttgcaaacgcatc 804009  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 243 - 281
Target Start/End: Complemental strand, 988725 - 988687
Alignment:
Q  243 aatttgggatcagatattagagaattccatgacttgcaa 281  Q
    |||||||||||||| |||| |||||||||||||||||||    
T  988725 aatttgggatcagagattaaagaattccatgacttgcaa 988687  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 280
Target Start/End: Complemental strand, 12132378 - 12132329
Alignment:
Q  231 tgctttttgacaaatttgggatcagatattagagaattccatgacttgca 280  Q
    ||||| ||| ||||||||||||||||||| ||||||||||| || |||||    
T  12132378 tgcttcttggcaaatttgggatcagatatgagagaattccaggatttgca 12132329  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 283
Target Start/End: Original strand, 1931894 - 1931934
Alignment:
Q  243 aatttgggatcagatattagagaattccatgacttgcaaac 283  Q
    |||||||| ||||| |||||||||||| |||||||||||||    
T  1931894 aatttggggtcagagattagagaattctatgacttgcaaac 1931934  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 241 - 286
Target Start/End: Original strand, 31145143 - 31145188
Alignment:
Q  241 caaatttgggatcagatattagagaattccatgacttgcaaacaca 286  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||    
T  31145143 caaatttgggatcagatataagagaattccatgacttgcaaacaca 31145188  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 288
Target Start/End: Complemental strand, 19727229 - 19727184
Alignment:
Q  243 aatttgggatcagatattagagaattccatgacttgcaaacacatc 288  Q
    |||||| ||||||| |||||||||||| | ||||||||||||||||    
T  19727229 aatttgtgatcagagattagagaattcaacgacttgcaaacacatc 19727184  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 287
Target Start/End: Complemental strand, 11081497 - 11081447
Alignment:
Q  237 ttgacaaatttgggatcagatattagagaattccatgacttgcaaacacat 287  Q
    ||||| ||||||||||||||||||| |||||| || |||||||||||||||    
T  11081497 ttgacgaatttgggatcagatattaaagaatttcacgacttgcaaacacat 11081447  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 288
Target Start/End: Original strand, 23764997 - 23765042
Alignment:
Q  243 aatttgggatcagatattagagaattccatgacttgcaaacacatc 288  Q
    |||||||||||||| ||||||||||||||  ||||||| |||||||    
T  23764997 aatttgggatcagaaattagagaattccaccacttgcacacacatc 23765042  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 288
Target Start/End: Original strand, 23814845 - 23814890
Alignment:
Q  243 aatttgggatcagatattagagaattccatgacttgcaaacacatc 288  Q
    |||||||||||||| ||||||||||||||  ||||||| |||||||    
T  23814845 aatttgggatcagaaattagagaattccaccacttgcacacacatc 23814890  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 280
Target Start/End: Original strand, 22672879 - 22672916
Alignment:
Q  243 aatttgggatcagatattagagaattccatgacttgca 280  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  22672879 aatttgcgatcagagattagagaattccatgacttgca 22672916  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 280
Target Start/End: Original strand, 25611733 - 25611779
Alignment:
Q  237 ttgacaaatttgggatca---gatattagagaattccatgacttgca 280  Q
    |||||||| |||||||||   ||||||||||||||||||||||||||    
T  25611733 ttgacaaaattgggatcattcgatattagagaattccatgacttgca 25611779  T

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