View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2201_high_15 (Length: 249)
Name: NF2201_high_15
Description: NF2201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2201_high_15 |
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| [»] scaffold0006 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 36295425 - 36295666
Alignment:
| Q |
1 |
acctcttagaaaataaatataagaaccgaaagtgttgagatgcatgctttaggagttggattgcccaagagtttccggggtgaagttgttagtagtacaa |
100 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
36295425 |
acctcttagacaataaatataagaaccgaaagtgttgagatgtatgctttaggagttggattgcccaagagttttcggggtgaagttgttagtagtacaa |
36295524 |
T |
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| Q |
101 |
cattttttatcggtagacgtccatgaatatgtatagacttcaaggcacctatggaagtttggagtgggaatccgacaaactgttgatggacaattcgaca |
200 |
Q |
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||||||||||| | |||||||||| || ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36295525 |
cattttttatcagcagacgtccatcaacatgtataaacttcaaggcatctatggaagtttggagtgggaatccgacaaactgttgatggacaattcgaca |
36295624 |
T |
|
| Q |
201 |
agtgaaccgaatcgaacaagtaataaggtagtaagtataatc |
242 |
Q |
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||||||||||||||||||||||||||||||||||||| |||| |
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| T |
36295625 |
agtgaaccgaatcgaacaagtaataaggtagtaagtaaaatc |
36295666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 169
Target Start/End: Complemental strand, 2397273 - 2397156
Alignment:
| Q |
52 |
ggagttggattgcccaagagtttccggggtgaagttgttagtagtacaacattttttatcggtagacgtccatgaatatgtatagacttcaaggcaccta |
151 |
Q |
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|||| ||||||| |||||||||| |||| |||| |||||||| |||||||| ||| || |||| |||||| || ||| ||||| |||| |||||| |
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| T |
2397273 |
ggagctggattgtccaagagtttttggggagaagctgttagtactacaacatatttgattaatagatgtccatcaacatggatagatctcaaaacaccta |
2397174 |
T |
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| Q |
152 |
tggaagtttggagtggga |
169 |
Q |
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| T |
2397173 |
tggaggtttggagtggga |
2397156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 170
Target Start/End: Complemental strand, 28836207 - 28836151
Alignment:
| Q |
114 |
tagacgtccatgaatatgtatagacttcaaggcacctatggaagtttggagtgggaa |
170 |
Q |
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| T |
28836207 |
tagatgtccatcaacatgaatagacttcaagacacctatggaagtatggagtgggaa |
28836151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 94
Target Start/End: Original strand, 47564876 - 47564918
Alignment:
| Q |
52 |
ggagttggattgcccaagagtttccggggtgaagttgttagta |
94 |
Q |
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| T |
47564876 |
ggagttggattgtccaagagtttctggggagaagttgttagta |
47564918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 170
Target Start/End: Complemental strand, 395 - 358
Alignment:
| Q |
133 |
atagacttcaaggcacctatggaagtttggagtgggaa |
170 |
Q |
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|||||||||||| ||||||||||||| ||||||||||| |
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| T |
395 |
atagacttcaagacacctatggaagtatggagtgggaa |
358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 170
Target Start/End: Complemental strand, 8551 - 8514
Alignment:
| Q |
133 |
atagacttcaaggcacctatggaagtttggagtgggaa |
170 |
Q |
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|||||||||||| ||||||||||||| ||||||||||| |
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| T |
8551 |
atagacttcaagacacctatggaagtatggagtgggaa |
8514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 170
Target Start/End: Complemental strand, 21986807 - 21986770
Alignment:
| Q |
133 |
atagacttcaaggcacctatggaagtttggagtgggaa |
170 |
Q |
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| T |
21986807 |
atagacttcaagacacctatggaagtatggagtgggaa |
21986770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 181
Target Start/End: Original strand, 9187345 - 9187393
Alignment:
| Q |
133 |
atagacttcaaggcacctatggaagtttggagtgggaatccgacaaact |
181 |
Q |
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|||||||||||| |||||||||| || ||||||||||| ||| |||||| |
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| T |
9187345 |
atagacttcaagacacctatggaggtatggagtgggaaaccggcaaact |
9187393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 170
Target Start/End: Original strand, 3325738 - 3325775
Alignment:
| Q |
133 |
atagacttcaaggcacctatggaagtttggagtgggaa |
170 |
Q |
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| T |
3325738 |
atagacttcaagacacctatggaagtatggagtgggaa |
3325775 |
T |
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