View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2201_high_7 (Length: 364)
Name: NF2201_high_7
Description: NF2201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2201_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 18 - 349
Target Start/End: Complemental strand, 3438490 - 3438159
Alignment:
| Q |
18 |
agaaagaggatacgataataatgacaactacgtatataaccacatgaacaagcacaaacacatacaccggatacaactaacacatagacacatgtaataa |
117 |
Q |
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| T |
3438490 |
agaaagaggatacaataataatgacaactacatatataaccacatgaacaagcacaaacacatacaccggatacaactaacacatagacacatgtaataa |
3438391 |
T |
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| Q |
118 |
gtaaatgaatataacaatgtcaatatgtatcggaacaggccttatatgaagtgtcggtgctacataacacatgattaagcacatataactaaagtctcaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
3438390 |
gtaaatgaatataacaatgtcaatatgtatcggaacaggccttatatgaagtgtcggtgctacataacacatgattaatcacatataactaaagtctcaa |
3438291 |
T |
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| Q |
218 |
accttaaaacttgagcaatgatatcatcccagtctatgacatgatcctcagtgatgacccattttgtatttggtggttcgacatcaggaaaatcaacaag |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3438290 |
accttaaaacttgagcaatgatatcatcccagtctatgacatgatcctcagtgatgacccattttgtatttggtggttcgacatcaggaaaatcaacaag |
3438191 |
T |
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| Q |
318 |
ataatcagaaagctttttgtttatctttcccc |
349 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
3438190 |
ataatcagaaagctttttgtttatctttcccc |
3438159 |
T |
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