View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2201_high_8 (Length: 359)
Name: NF2201_high_8
Description: NF2201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2201_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 39536280 - 39536622
Alignment:
| Q |
1 |
agagctcattagaactaacttcatttctatttcagaattctcaaatcttggccactcc-acttctagcaatagtttatattgaaatttggttaaaatata |
99 |
Q |
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| T |
39536280 |
agagctcattagaactaacttcatttctatttcagaattctcaaatcttggccactcccacttctagcaatagtttatattgaaatttggttaaaatata |
39536379 |
T |
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| Q |
100 |
tttttatttgtttcctacgaaaattttagtccttcatcaatctaatatcaagggttacatttttgtannnnnnnnnnnnaaaaaatgattacaaaaattg |
199 |
Q |
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| T |
39536380 |
tttttatttgtttcctatgaaaattttagtccttcatcaatctaatatcaagggttacatttttgtattttttttattttaaaaatgattacaaaaattg |
39536479 |
T |
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| Q |
200 |
caggaaggaaaatatatttaacctctacatcccaaatggcaagtttcaaagcaaatagaatttacctttaggagaaagctcttggtttcttcatatttag |
299 |
Q |
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| T |
39536480 |
caggaaggaaaatatatttaacctctacatcccaaatggcaagtttcaaagcaaatagaatttacctttaggagaaagctcttggtttcttcatatttag |
39536579 |
T |
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| Q |
300 |
atctcaaacgctcaccaaatggacacaactctggcgtaactaa |
342 |
Q |
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| T |
39536580 |
atctcaaacgctcaccaaatggacacaactctggcgtaactaa |
39536622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 237 - 331
Target Start/End: Original strand, 1551591 - 1551685
Alignment:
| Q |
237 |
ggcaagtttcaaagcaaatagaatttacctttaggagaaagctcttggtttcttcatatttagatctcaaacgctcaccaaatggacacaactct |
331 |
Q |
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|||||||||||| |||| ||||| ||||||| |||||||||| |||||||||||||||||||||||| ||||| | |||||| |||||||||||| |
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| T |
1551591 |
ggcaagtttcaacgcaattagaaattaccttgaggagaaagcccttggtttcttcatatttagatcttaaacgtttaccaaacggacacaactct |
1551685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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