View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2201_low_1 (Length: 726)

Name: NF2201_low_1
Description: NF2201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2201_low_1
NF2201_low_1
[»] chr1 (4 HSPs)
chr1 (337-708)||(22894567-22894938)
chr1 (72-259)||(22894351-22894538)
chr1 (438-575)||(15974270-15974404)
chr1 (435-575)||(15975524-15975658)
[»] chr3 (6 HSPs)
chr3 (421-708)||(2431368-2431652)
chr3 (72-259)||(2432649-2432836)
chr3 (406-574)||(14539457-14539623)
chr3 (337-425)||(2432520-2432609)
chr3 (72-178)||(14539819-14539925)
chr3 (436-509)||(3873512-3873581)
[»] chr8 (6 HSPs)
chr8 (72-259)||(16296587-16296774)
chr8 (72-259)||(16304289-16304476)
chr8 (559-706)||(16297302-16297449)
chr8 (559-706)||(16305004-16305151)
chr8 (335-434)||(16296851-16296950)
chr8 (335-434)||(16304553-16304652)


Alignment Details
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 337 - 708
Target Start/End: Original strand, 22894567 - 22894938
Alignment:
Q  337 ataaaaatgaggccatctgccacgtttatatagatttgctggatttttaacttataatgtgaaattaagaatttgaaatagatatttaaaacaaagagga 436  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  22894567 ataaaaatgaggccatctgccacgtttatatagatttgctggatttttaacttataatgtgaaattaagaatttgaactagatatttaaaacaaagagga 22894666  T
Q  437 tcaattgttgaccatctttcaaattatcaaacacaaacaacaatgacatttaaatttgtactagattaaaactaacaagttagaattatcaattcaacac 536  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  22894667 tcaattgttgaccatctttcaaattatcaaacacaaacaacaatgacatttaaatttgtactagattaaaactaacaagttaaaattatcaatacaacac 22894766  T
Q  537 acaatacatataaagaaggataggagatgcataaataacattgcaaatcattgtaaagatttaaatagaacaatcatccaaatggaaaataaaagtctct 636  Q
    |||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||| ||||||||||| ||||||||||||||||| |    
T  22894767 acaatacatataaagaaggataggagatgcataaataacattgcagcccattgtaaagatttaaatagtacaatcatccagatggaaaataaaagtcttt 22894866  T
Q  637 agtatcagctgtagcagcattatgcattatataatgcattgttcaatatgaagttaattcaaatggagcacc 708  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  22894867 agtatcagctgtagcagcattatgcattatataatgcattgttcaatatcaagttaattcaaatggagcacc 22894938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 172; E-Value: 5e-92
Query Start/End: Original strand, 72 - 259
Target Start/End: Original strand, 22894351 - 22894538
Alignment:
Q  72 tcgggcgggttcgggcccaaagtggcagcccatcccaacccgaagggttcaaacatctggcccaattgtgcccaaaactagtaagcgggtagttcgggtt 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  22894351 tcgggcgggttcgggcccaaagtggcagcccatcccaacccgaagggttcaaacctctggcccaattgtgcccaaaactagtaagcgggtagttcgggtt 22894450  T
Q  172 cgggttaccgggttgtgcgggttaccgggcggatatacacgggttggaccttatctggcccaacatgattttgaaagcccagttgaat 259  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  22894451 cgggttaccgggttgtgcgggttaccgggcagatatatacgggttggaccttatctggcccaacatgattttgaaagcccaattgaat 22894538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 438 - 575
Target Start/End: Original strand, 15974270 - 15974404
Alignment:
Q  438 caattgttgaccatctttcaaattatcaaacacaaacaacaatgacatttaaatttgtactagattaaaactaacaagttagaattatcaattcaacaca 537  Q
    ||||| ||||||| ||||||||| |||||||| ||  | ||||||||||||||||| ||||||||| |||| | || |||| ||||||||  | | ||||    
T  15974270 caattattgaccaactttcaaatcatcaaacataatta-caatgacatttaaatttatactagatttaaacgagcacgttaaaattatca--ttaccaca 15974366  T
Q  538 caatacatataaagaaggataggagatgcataaataac 575  Q
    |||||||||| | | ||||||| |||||||||||||||    
T  15974367 caatacatatgatgtaggatagaagatgcataaataac 15974404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 435 - 575
Target Start/End: Original strand, 15975524 - 15975658
Alignment:
Q  435 gatcaattgttgaccatctttcaaattatcaaacacaaacaacaatgacatttaaatttgtactagattaaaactaacaagttagaattatcaattcaac 534  Q
    ||||||||  |||||| ||||||||| |||||||||||    |||||||||||||| ||||||||||||||||||| ||||||| |||| ||| | |  |    
T  15975524 gatcaattactgaccaactttcaaatcatcaaacacaa----caatgacatttaaaattgtactagattaaaactagcaagttaaaattttcattgc--c 15975617  T
Q  535 acacaatacatataaagaaggataggagatgcataaataac 575  Q
     || | |||| |||| | ||||||| |||||||||||||||    
T  15975618 gcatagtacacataatgtaggatagaagatgcataaataac 15975658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 421 - 708
Target Start/End: Complemental strand, 2431652 - 2431368
Alignment:
Q  421 tttaaaacaaagaggatcaattgttgaccatctttcaaattatcaaacacaaacaacaatgacatttaaatttgtactagattaaaactaacaagttaga 520  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||| |    
T  2431652 tttaagacaaagaggatcaattgttgaccatctttcaaattatcaaacacaa----caatgacatttaaatttgtactagattaaaactaacaagttaaa 2431557  T
Q  521 attatcaattcaacacacaatacatataaagaaggataggagatgcataaataacattgcaaatcattgtaaagatttaaa-tagaacaatcatccaaat 619  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||| ||| ||||||| ||    
T  2431556 attatcaatacaacacacaatacatataaagaaggataggagatgcataaataacattgcagaccattgtaaagatttaaattagtacagtcatccagat 2431457  T
Q  620 ggaaaataaaagtctctagtatcagctgtagcagcattatgcattatataatgcattgttcaatatgaagttaattcaaatggagcacc 708  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||| ||  ||||||||||| ||||||    
T  2431456 ggaaaataaaagtctatagtatcagatgtagcagcattatgcattatataatgtattgttcaatatcaaaataattcaaatgaagcacc 2431368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 72 - 259
Target Start/End: Complemental strand, 2432836 - 2432649
Alignment:
Q  72 tcgggcgggttcgggcccaaagtggcagcccatcccaacccgaagggttcaaacatctggcccaattgtgcccaaaactagtaagcgggtagttcgggtt 171  Q
    |||| |||||| ||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||    
T  2432836 tcggacgggtttgggcccaaagtggaagctcatcccaacccgaagggttcaaacctctggcccaattgtggccaaaactagtaagcaggtagttcgggtt 2432737  T
Q  172 cgggttaccgggttgtgcgggttaccgggcggatatacacgggttggaccttatctggcccaacatgattttgaaagcccagttgaat 259  Q
    ||||||||||||||| ||||||||||||||||||||  ||  ||||||||||||||||||||||||||| ||||||||||| ||||||    
T  2432736 cgggttaccgggttgcgcgggttaccgggcggatatttacatgttggaccttatctggcccaacatgatattgaaagcccaattgaat 2432649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 406 - 574
Target Start/End: Complemental strand, 14539623 - 14539457
Alignment:
Q  406 aatttgaaatagatatttaaaac--aaagaggatcaattgttgaccatctttcaaattatcaaacacaaacaacaatgacatttaaatttgtactagatt 503  Q
    |||| ||| ||||||||||||||  ||| ||||||||||||| |||| |||||||||||||||||||||    |||||| ||||||||||||||||||||    
T  14539623 aattcgaactagatatttaaaactaaaacaggatcaattgtttaccaactttcaaattatcaaacacaa----caatgagatttaaatttgtactagatt 14539528  T
Q  504 aaaactaacaagttagaattatcaattcaacacacaatacatataaagaaggataggagatgcataaataa 574  Q
    ||||||||||||||| |||||||||| | |||||||||||| |||| |  |||||||||||||||||||||    
T  14539527 aaaactaacaagttaaaattatcaataccacacacaatacacataatgttggataggagatgcataaataa 14539457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 337 - 425
Target Start/End: Complemental strand, 2432609 - 2432520
Alignment:
Q  337 ataaaaatgaggcca-tctgccacgtttatatagatttgctggatttttaacttataatgtgaaattaagaatttgaaatagatatttaa 425  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  2432609 ataaaaatgaggcctctctgccacgtttatatagatttgctggatttttaacttattatgtgaaattaagaatttgaactagatatttaa 2432520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 72 - 178
Target Start/End: Complemental strand, 14539925 - 14539819
Alignment:
Q  72 tcgggcgggttcgggcccaaagtggcagcccatcccaacccgaagggttcaaacatctggcccaattgtgcccaaaactagtaagc-gggtagttcgggt 170  Q
    |||||||||||||| |||||||||||| ||||  ||||||| |  ||| || |||||| || ||||||||||||||||| ||  || |||||||||| ||    
T  14539925 tcgggcgggttcggacccaaagtggcaacccagtccaaccc-acaggtccagacatcttgcacaattgtgcccaaaactggtgtgcggggtagttcgagt 14539827  T
Q  171 tcgggtta 178  Q
    ||||||||    
T  14539826 tcgggtta 14539819  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 436 - 509
Target Start/End: Original strand, 3873512 - 3873581
Alignment:
Q  436 atcaattgttgaccatctttcaaattatcaaacacaaacaacaatgacatttaaatttgtactagattaaaact 509  Q
    ||||||||||||  | |||||||||||||||||| ||    |||||| |||||||||| |||||||||||||||    
T  3873512 atcaattgttgattaactttcaaattatcaaacataa----caatgaaatttaaatttatactagattaaaact 3873581  T

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Target: chr8 (Bit Score: 164; Significance: 3e-87; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 72 - 259
Target Start/End: Original strand, 16296587 - 16296774
Alignment:
Q  72 tcgggcgggttcgggcccaaagtggcagcccatcccaacccgaagggttcaaacatctggcccaattgtgcccaaaactagtaagcgggtagttcgggtt 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  16296587 tcgggcgggttcgggcccaaagtggcagcccatcccaacccgaagggttcaaacctctggcccaattgtgcccaaaactagtaagcgggtagttcgggtt 16296686  T
Q  172 cgggttaccgggttgtgcgggttaccgggcggatatacacgggttggaccttatctggcccaacatgattttgaaagcccagttgaat 259  Q
    ||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  16296687 cgggttatcgggttgtgcgggttaacgggcggatatatacgggttggaccttatctggcccaatatgattttgaaagcccaattgaat 16296774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 72 - 259
Target Start/End: Original strand, 16304289 - 16304476
Alignment:
Q  72 tcgggcgggttcgggcccaaagtggcagcccatcccaacccgaagggttcaaacatctggcccaattgtgcccaaaactagtaagcgggtagttcgggtt 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  16304289 tcgggcgggttcgggcccaaagtggcagcccatcccaacccgaagggttcaaacctctggcccaattgtgcccaaaactagtaagcgggtagttcgggtt 16304388  T
Q  172 cgggttaccgggttgtgcgggttaccgggcggatatacacgggttggaccttatctggcccaacatgattttgaaagcccagttgaat 259  Q
    ||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  16304389 cgggttatcgggttgtgcgggttaacgggcggatatatacgggttggaccttatctggcccaatatgattttgaaagcccaattgaat 16304476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 559 - 706
Target Start/End: Original strand, 16297302 - 16297449
Alignment:
Q  559 ggagatgcataaataacattgcaaatcattgtaaagatttaaatagaacaatcatccaaatggaaaataaaagtctctagtatcagctgtagcagcatta 658  Q
    ||||||||||||||||| ||||| | |||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||     
T  16297302 ggagatgcataaataaccttgcacaccattgtaaagatttaaatagtacaatcatccagatggaaaataaaagtctttagtatcagctgtagcagcattt 16297401  T
Q  659 tgcattatataatgcattgttcaatatgaagttaattcaaatggagca 706  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  16297402 tgcattatataatgcattgttcaatatcaagttaattcaaatggagca 16297449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 559 - 706
Target Start/End: Original strand, 16305004 - 16305151
Alignment:
Q  559 ggagatgcataaataacattgcaaatcattgtaaagatttaaatagaacaatcatccaaatggaaaataaaagtctctagtatcagctgtagcagcatta 658  Q
    ||||||||||||||||| ||||| | |||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||     
T  16305004 ggagatgcataaataaccttgcacaccattgtaaagatttaaatagtacaatcatccagatggaaaataaaagtctttagtatcagctgtagcagcattt 16305103  T
Q  659 tgcattatataatgcattgttcaatatgaagttaattcaaatggagca 706  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  16305104 tgcattatataatgcattgttcaatatcaagttaattcaaatggagca 16305151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 335 - 434
Target Start/End: Original strand, 16296851 - 16296950
Alignment:
Q  335 aaataaaaatgaggccatctgccacgtttatatagatttgctggatttttaacttataatgtgaaattaagaatttgaaatagatatttaaaacaaagag 434  Q
    |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  16296851 aaataaaaatgaggtcatctgccacgtttatatagatttgttggatttttaacttataatgtgaaattaagaatttgaactagatatttaaaacaaagag 16296950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 335 - 434
Target Start/End: Original strand, 16304553 - 16304652
Alignment:
Q  335 aaataaaaatgaggccatctgccacgtttatatagatttgctggatttttaacttataatgtgaaattaagaatttgaaatagatatttaaaacaaagag 434  Q
    |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  16304553 aaataaaaatgaggtcatctgccacgtttatatagatttgttggatttttaacttataatgtgaaattaagaatttgaactagatatttaaaacaaagag 16304652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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