View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2201_low_13 (Length: 294)

Name: NF2201_low_13
Description: NF2201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2201_low_13
NF2201_low_13
[»] chr4 (13 HSPs)
chr4 (18-280)||(4022561-4022823)
chr4 (139-265)||(4007522-4007647)
chr4 (18-134)||(3998415-3998531)
chr4 (18-94)||(4007398-4007474)
chr4 (84-135)||(3958038-3958089)
chr4 (81-138)||(3958135-3958192)
chr4 (187-250)||(3922456-3922519)
chr4 (143-266)||(3957887-3958009)
chr4 (209-250)||(3999797-3999838)
chr4 (187-250)||(3815352-3815415)
chr4 (187-250)||(3935783-3935846)
chr4 (187-253)||(3807748-3807814)
chr4 (187-265)||(3998578-3998656)


Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 18 - 280
Target Start/End: Original strand, 4022561 - 4022823
Alignment:
Q  18 aataggtgtaagtattaaaattataattataagaagtaatattagtaaatcaaccgttaactgtgtctacttacatcaatctatagacttgtgactaaat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4022561 aataggtgtaagtattaaaattataattataagaagtaatattagtaaatcaaccgttaactgtgtctacttacatcaatctatagacttgtgactaaat 4022660  T
Q  118 caacttcttcatcttcagttggatactaaacacagtcctattccattggttaacataatcaaacaattcccatttgttgaatgagattcctatatgttga 217  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4022661 caacttcttcatcttcagttggatactaaccacagtcctattccattggttaacataatcaaacaattcccatttgttgaatgagattcctatatgttga 4022760  T
Q  218 gtggtttatggggctgattcctaacccttttaattcaacctctggtctcattctatagacatt 280  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4022761 gtggtttatggggctgattcctaacccttttaattcaacctctggtctcattctatagacatt 4022823  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 139 - 265
Target Start/End: Original strand, 4007522 - 4007647
Alignment:
Q  139 gatactaaacacagtcctattccattggttaacataatcaaacaattcccatttgttgaatgagattcctatatgttgagtggtttatggggctgattcc 238  Q
    |||||||| ||||||||||||||||| ||| | |||||||||||||||| |||| ||||||||||||   ||||||||||| | |||||||||| || ||    
T  4007522 gatactaagcacagtcctattccatttgttcatataatcaaacaattcc-attttttgaatgagattatgatatgttgagttgcttatggggcttatgcc 4007620  T
Q  239 taacccttttaattcaacctctggtct 265  Q
     ||||||||||| || |||||||||||    
T  4007621 aaacccttttaactccacctctggtct 4007647  T

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Target: chr4; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 18 - 134
Target Start/End: Original strand, 3998415 - 3998531
Alignment:
Q  18 aataggtgtaagtattaaaattataattataagaagtaatattagtaaatcaaccgttaactgtgtctacttacatcaatctatagacttgtgactaaat 117  Q
    |||||||| ||||||||||| |||||| |||  ||||||| || |||| ||||| ||||||||||||||||| |||||  ||||||| ||||| ||||||    
T  3998415 aataggtgcaagtattaaaactataatgatagaaagtaatgttggtaactcaactgttaactgtgtctacttgcatcatactatagagttgtgtctaaat 3998514  T
Q  118 caacttcttcatcttca 134  Q
    ||| |||||||||||||    
T  3998515 caaattcttcatcttca 3998531  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 4007398 - 4007474
Alignment:
Q  18 aataggtgtaagtattaaaattataattataagaagtaatattagtaaatcaaccgttaactgtgtctacttacatc 94  Q
    |||||||||||| || |||||||||||||||| ||||||  || |||| ||||| ||||||||||||||||| ||||    
T  4007398 aataggtgtaagaatgaaaattataattataaaaagtaacgttggtaactcaactgttaactgtgtctacttgcatc 4007474  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 84 - 135
Target Start/End: Complemental strand, 3958089 - 3958038
Alignment:
Q  84 ctacttacatcaatctatagacttgtgactaaatcaacttcttcatcttcag 135  Q
    ||||||||||||| |||| |||||||| ||||||||||||||||||||||||    
T  3958089 ctacttacatcaaactatggacttgtgtctaaatcaacttcttcatcttcag 3958038  T

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Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 138
Target Start/End: Complemental strand, 3958192 - 3958135
Alignment:
Q  81 tgtctacttacatcaatctatagacttgtgactaaatcaacttcttcatcttcagttg 138  Q
    |||||||||||||||| |||||||||| ||  |||||||| |||||||||||||||||    
T  3958192 tgtctacttacatcaaactatagacttctgtgtaaatcaaattcttcatcttcagttg 3958135  T

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Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 187 - 250
Target Start/End: Complemental strand, 3922519 - 3922456
Alignment:
Q  187 ccatttgttgaatgagattcctatatgttgagtggtttatggggctgattcctaacccttttaa 250  Q
    ||||||||||||| ||||| | ||||||||| |||||||||||||| || || |||||||||||    
T  3922519 ccatttgttgaattagattgcgatatgttgactggtttatggggctcatgccaaacccttttaa 3922456  T

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Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 143 - 266
Target Start/End: Complemental strand, 3958009 - 3957887
Alignment:
Q  143 ctaaacacagtcctattccattggttaacataatcaaacaattcccatttgttgaatgagattcctatatgttgagtggtttatggggctgattcctaac 242  Q
    |||| |||||||||| |||||| ||||||||||||||| |||| ||||||||| || ||  ||  ||| | || || || ||||||| ||||| || |||    
T  3958009 ctaagcacagtcctactccatttgttaacataatcaaataatt-ccatttgttcaacgatgtttttatctcttaaggggattatgggtctgatgccaaac 3957911  T
Q  243 ccttttaattcaacctctggtctc 266  Q
    |||||||| || ||||||||||||    
T  3957910 ccttttaactccacctctggtctc 3957887  T

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Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 209 - 250
Target Start/End: Original strand, 3999797 - 3999838
Alignment:
Q  209 atatgttgagtggtttatggggctgattcctaacccttttaa 250  Q
    ||||||||||||||||||||||||||| || |||||||||||    
T  3999797 atatgttgagtggtttatggggctgatgccaaacccttttaa 3999838  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 250
Target Start/End: Original strand, 3815352 - 3815415
Alignment:
Q  187 ccatttgttgaatgagattcctatatgttgagtggtttatggggctgattcctaacccttttaa 250  Q
    |||||||||||||||| ||   ||||||||| |||||||||||||| || || |||||||||||    
T  3815352 ccatttgttgaatgaggttttgatatgttgactggtttatggggctcatgccaaacccttttaa 3815415  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 250
Target Start/End: Complemental strand, 3935846 - 3935783
Alignment:
Q  187 ccatttgttgaatgagattcctatatgttgagtggtttatggggctgattcctaacccttttaa 250  Q
    ||||||||||||| ||||| | || |||||| |||||||||||||| || || |||||||||||    
T  3935846 ccatttgttgaattagattgcgatgtgttgactggtttatggggctcatgccaaacccttttaa 3935783  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 253
Target Start/End: Original strand, 3807748 - 3807814
Alignment:
Q  187 ccatttgttgaatgagattcctatatgttgagtggtttatggggctgattcctaacccttttaattc 253  Q
    ||||||||||||||| |||   ||||||||| |||||||| ||||| || || ||||||||||||||    
T  3807748 ccatttgttgaatgaaattgtgatatgttgactggtttatagggctcatgccaaacccttttaattc 3807814  T

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Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 265
Target Start/End: Original strand, 3998578 - 3998656
Alignment:
Q  187 ccatttgttgaatgagattcctatatgttgagtggtttatggggctgattcctaacccttttaattcaacctctggtct 265  Q
    ||||||||| |||||||||   ||||||||||| | |||||||||| || || ||||||||||| || ||||| |||||    
T  3998578 ccatttgttaaatgagattatgatatgttgagttgcttatggggcttatgccaaacccttttaactccacctcgggtct 3998656  T

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