View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2201_low_14 (Length: 283)

Name: NF2201_low_14
Description: NF2201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2201_low_14
NF2201_low_14
[»] chr2 (4 HSPs)
chr2 (1-275)||(11926934-11927208)
chr2 (26-119)||(45134612-45134704)
chr2 (50-92)||(13136481-13136523)
chr2 (27-83)||(36866286-36866342)
[»] chr6 (1 HSPs)
chr6 (27-123)||(33246769-33246864)
[»] chr5 (1 HSPs)
chr5 (26-123)||(41364743-41364840)
[»] chr7 (2 HSPs)
chr7 (27-119)||(42022917-42023009)
chr7 (47-83)||(3905199-3905235)
[»] scaffold0332 (1 HSPs)
scaffold0332 (27-89)||(12112-12174)
[»] chr8 (1 HSPs)
chr8 (27-75)||(39587686-39587734)
[»] chr1 (2 HSPs)
chr1 (125-173)||(7040597-7040645)
chr1 (179-259)||(24864341-24864421)
[»] chr3 (1 HSPs)
chr3 (79-123)||(5411518-5411562)


Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 11927208 - 11926934
Alignment:
Q  1 atttaacaatgttgctttaaacataatgttatggacaaccttttggttgttcataaatgaaagagataatattctaaaagagagaataagctataactaa 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11927208 atttaacaatgttgctttaaacataatgttatggaaaaccttttggttgttcataaatgaaagagataatattctaaaagagagaataagctataactaa 11927109  T
Q  101 gactaatctaacaaactaaattcataatcatgtatgataaaacaagaccaatgcagaaacatgcatgtttcaacttgttaggaactcaagaattggattt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11927108 gactaatctaacaaactaaattcataatcatgtatgataaaacaagaccaatgcagaaacatgcatgtttcaacttgttaggaactcaagaattggattt 11927009  T
Q  201 taaatgaattccttaaaattggatagaattgataaatcaaatgaataactccttgaatatctttctagtattatc 275  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11927008 caaatgaattccttaaaattggatagaattgataaatcaaatgaataactccttgaatatctttctagtattatc 11926934  T

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Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 26 - 119
Target Start/End: Original strand, 45134612 - 45134704
Alignment:
Q  26 atgttatggacaaccttttggttgttcataaatgaaagagataatattctaaaagagagaataagctataactaagactaatctaacaaactaa 119  Q
    |||| ||| ||||| ||| ||||||| |||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  45134612 atgtaatgaacaacttttgggttgtttataaatgagagagataatattctaaaagagagaataagctaaaactaa-actaatctaacaaactaa 45134704  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 92
Target Start/End: Original strand, 13136481 - 13136523
Alignment:
Q  50 ttcataaatgaaagagataatattctaaaagagagaataagct 92  Q
    ||||||||||| || ||||||||||||||||||||||||||||    
T  13136481 ttcataaatgagagtgataatattctaaaagagagaataagct 13136523  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 36866342 - 36866286
Alignment:
Q  27 tgttatggacaaccttttggttgttcataaatgaaagagataatattctaaaagaga 83  Q
    ||||||| ||||| |||||||||||||||||||||||||| | |||  |||||||||    
T  36866342 tgttatgaacaactttttggttgttcataaatgaaagagaaattatattaaaagaga 36866286  T

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Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 27 - 123
Target Start/End: Complemental strand, 33246864 - 33246769
Alignment:
Q  27 tgttatggacaaccttttggttgttcataaatgaaagagataatattctaaaagagagaataagctataactaagactaatctaacaaactaaattc 123  Q
    ||||||||||||||||| || |||||||||||| |||||| | | | |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  33246864 tgttatggacaacctttgggctgttcataaatggaagagaaattgtactaaaagagagaataagctataactaagactaatctaa-aaactaaattc 33246769  T

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Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 26 - 123
Target Start/End: Complemental strand, 41364840 - 41364743
Alignment:
Q  26 atgttatggacaaccttttggttgttcataaatgaaagagataatattctaaaagagagaataagctataactaagactaatctaacaaactaaattc 123  Q
    |||||||||||||||||| | |||||||| ||||||||||| | | | ||||||||||||||||||||| |||||||||||| ||| |||||||||||    
T  41364840 atgttatggacaacctttggattgttcattaatgaaagagaaattgtactaaaagagagaataagctatgactaagactaatataagaaactaaattc 41364743  T

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Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 27 - 119
Target Start/End: Complemental strand, 42023009 - 42022917
Alignment:
Q  27 tgttatggacaaccttttggttgttcataaatgaaagagataatattctaaaagaga-gaataagctataactaagactaatctaacaaactaa 119  Q
    ||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||  ||||| ||| |||||| |||| |||||||||||||    
T  42023009 tgttatggacaacttttgggttgttcataaatgaaagagatgatattctaaaagagataaataaactaaaactaa-actattctaacaaactaa 42022917  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 83
Target Start/End: Original strand, 3905199 - 3905235
Alignment:
Q  47 ttgttcataaatgaaagagataatattctaaaagaga 83  Q
    |||||||||||||| ||||||||||||||||||||||    
T  3905199 ttgttcataaatgagagagataatattctaaaagaga 3905235  T

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Target: scaffold0332 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0332
Description:

Target: scaffold0332; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 27 - 89
Target Start/End: Complemental strand, 12174 - 12112
Alignment:
Q  27 tgttatggacaaccttttggttgttcataaatgaaagagataatattctaaaagagagaataa 89  Q
    ||||||| ||||| |||||||||||||||||||||  ||||||||||||||||||||||||||    
T  12174 tgttatgaacaactttttggttgttcataaatgaagaagataatattctaaaagagagaataa 12112  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 39587734 - 39587686
Alignment:
Q  27 tgttatggacaaccttttggttgttcataaatgaaagagataatattct 75  Q
    ||||||| ||||| |||||||||||| ||||||| ||||||||||||||    
T  39587734 tgttatgaacaactttttggttgttcgtaaatgagagagataatattct 39587686  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 173
Target Start/End: Original strand, 7040597 - 7040645
Alignment:
Q  125 taatcatgtatgataaaacaagaccaatgcagaaacatgcatgtttcaa 173  Q
    |||||||||| |||| ||| ||||||||| |||||||||||||||||||    
T  7040597 taatcatgtaagatataactagaccaatggagaaacatgcatgtttcaa 7040645  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 259
Target Start/End: Original strand, 24864341 - 24864421
Alignment:
Q  179 taggaactcaagaattggattttaaatgaattccttaaaattggatagaattgataaatcaaatgaataactccttgaata 259  Q
    ||||||| ||||| |||||||  ||| | |||||  |||| |||| ||||||| |||||||||||||||| ||||| ||||    
T  24864341 taggaacccaagacttggattccaaacgtattccccaaaactggacagaattggtaaatcaaatgaataattcctttaata 24864421  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 123
Target Start/End: Complemental strand, 5411562 - 5411518
Alignment:
Q  79 agagagaataagctataactaagactaatctaacaaactaaattc 123  Q
    ||||||||||||||| |||||  |||| |||||||||||||||||    
T  5411562 agagagaataagctacaactataactattctaacaaactaaattc 5411518  T

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