View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2201_low_15 (Length: 274)
Name: NF2201_low_15
Description: NF2201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2201_low_15 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 238; Significance: 1e-132; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 15 - 264
Target Start/End: Complemental strand, 4711444 - 4711195
Alignment:
| Q |
15 |
tagtgatggtagaaaatgaatatgtgaaacttgagagagagatacgcgcggttgtgagtggaatatcgatattggaaagggaattaggtgatgatttaag |
114 |
Q |
| |
|
|||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4711444 |
tagtgatgctagaaaatgagtatgtgaaatttgagagagagatacgcgcggttgtgagtggaatatcgatattggaaagggaattaggtgatgatttaag |
4711345 |
T |
|
| Q |
115 |
agatgggtttgtggtttttggttcaatgaaggtaaagagatttgagttatcaatattatcaccaacccaaattcgactatctaaggcagtagtgtttgtt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4711344 |
agatgggtttgtggtttttggttcaatgaaggtaaagagatttgagttatcaatattatcaccaacccaaattcgactatctaaggcagtagtgtttgtt |
4711245 |
T |
|
| Q |
215 |
gagaagccacaattgatggctaaattgtaatcagggttgtatgagttagc |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4711244 |
gagaagccacaattgatggctaaattgtaatcagggttgtatgagttagc |
4711195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 4845386 - 4845125
Alignment:
| Q |
1 |
aaaaacaggcgaactagtgatggtagaaaatgaatatgtgaaacttgagagagagatacgcgcggttgtgagtggaatatcgatattggaaagggaatta |
100 |
Q |
| |
|
||||||||| ||||||| ||| |||||||||| ||||||||| |||||| ||||||| |||||||||||| |||||| | ||||||||||||||||||| |
|
|
| T |
4845386 |
aaaaacaggggaactaggaatgctagaaaatgagtatgtgaaatttgagaaagagatatgcgcggttgtgaatggaatttggatattggaaagggaatta |
4845287 |
T |
|
| Q |
101 |
ggtgatgatttaagagatgggtttgtggtttttggttcaatgaaggtaaagagatttgagttatcaatattatcaccaacccaaattcgactatctaagg |
200 |
Q |
| |
|
|| |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
4845286 |
ggagatgatttaaaagatggatttgtggtttttggttcaatgaaggtaaagagatttgagttatcaatattatcaccaatccaaattcgtttatctaagg |
4845187 |
T |
|
| Q |
201 |
cagtagtgtttgttgagaagccacaattgatggctaaattgtaatcagggttgtatgagtta |
262 |
Q |
| |
|
|| | ||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4845186 |
caacattgtttgttgaggaaccacaattgatggctaaattgtaatcagggttgtatgagtta |
4845125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 4864646 - 4864899
Alignment:
| Q |
1 |
aaaaacaggcgaactagtgatggtagaaaatgaatatgtgaaacttgagagagagatacgcgcggttgtgagtggaatatcgatattggaaagggaatta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| || ||| |||| || |
|
|
| T |
4864646 |
aaaaacaggcgaactagtgatggtagaaaatgaatatgtgaaacttgagagagagatacgcgcggttgtgtatggaatttcgatgtttgaagcggaacta |
4864745 |
T |
|
| Q |
101 |
ggtgatgatttaagagatgggtttgtggtttttggttcaatgaaggtaaagagatttgagttatcaatattatcaccaacccaaattcgactatctaagg |
200 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
4864746 |
ggtgatgttttaagagatgggtttgtggttttttgttcaatgaaagtaaagagatttttgttatcaatattatcaccaacccaaattcgtttatctaag- |
4864844 |
T |
|
| Q |
201 |
cagtagtgtttgttgagaagccacaattgatggctaaattgtaatcagggttgtatg |
257 |
Q |
| |
|
||||| ||||||||| |||||||| |||||||||| || |||||||| |||||| |
|
|
| T |
4864845 |
--gtagtatttgttgaggagccacaaccgatggctaaactgaaatcagggctgtatg |
4864899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 18 - 258
Target Start/End: Complemental strand, 4783189 - 4782949
Alignment:
| Q |
18 |
tgatggtagaaaatgaatatgtgaaacttgagagagagatacgcgcggttgtgagtggaatatcgatattggaaagggaattaggtgatgatttaagaga |
117 |
Q |
| |
|
||||| |||||||||| ||||||||| ||||||||||| ||| ||||||||| |||||| | |||||| || |||||||||||| || ||||||||| |
|
|
| T |
4783189 |
tgatgttagaaaatgagtatgtgaaatttgagagagaggcacgtacggttgtgaatggaatttggatatttgagagggaattaggttttgttttaagaga |
4783090 |
T |
|
| Q |
118 |
tgggtttgtggtttttggttcaatgaaggtaaagagatttgagttatcaatattatcaccaacccaaattcgactatctaaggcagtagtgtttgttgag |
217 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||||| ||||||||||| |||||| ||||||||||||| | ||| ||||||||||||||||||||| |
|
|
| T |
4783089 |
tgggtttgtattttttggttcaatgaaggaaaagagattagagttatcaatgttatcaacaacccaaattcgtccatcaaaggcagtagtgtttgttgag |
4782990 |
T |
|
| Q |
218 |
aagccacaattgatggctaaattgtaatcagggttgtatga |
258 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
4782989 |
gagccacaactgatggctaaactgtaatcagggttgtatga |
4782949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 18 - 258
Target Start/End: Complemental strand, 4815618 - 4815378
Alignment:
| Q |
18 |
tgatggtagaaaatgaatatgtgaaacttgagagagagatacgcgcggttgtgagtggaatatcgatattggaaagggaattaggtgatgatttaagaga |
117 |
Q |
| |
|
||||| |||||||||| ||||||||| ||||||||||| ||| ||||||||| |||||| | | |||| || |||||||||||| || ||||||||| |
|
|
| T |
4815618 |
tgatgttagaaaatgagtatgtgaaatttgagagagaggcacgtccggttgtgaatggaatttgggtatttgagagggaattaggttttgttttaagaga |
4815519 |
T |
|
| Q |
118 |
tgggtttgtggtttttggttcaatgaaggtaaagagatttgagttatcaatattatcaccaacccaaattcgactatctaaggcagtagtgtttgttgag |
217 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||||| ||||||||||| |||||| ||||||||||||| | ||| ||||||||||||||||||||| |
|
|
| T |
4815518 |
tgggtttgtattttttggttcaatgaaggaaaagagattagagttatcaatgttatcaacaacccaaattcgtccatcaaaggcagtagtgtttgttgag |
4815419 |
T |
|
| Q |
218 |
aagccacaattgatggctaaattgtaatcagggttgtatga |
258 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
4815418 |
gagccacaactgatggctaaactgtaatcagggttgtatga |
4815378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 4637575 - 4637838
Alignment:
| Q |
1 |
aaaaacaggcgaactagtgatggtagaaaatgaatatgtgaaacttgagagagagatacgcgcggttgtgagtggaatatcgatattggaaagggaatta |
100 |
Q |
| |
|
|||||||| ||| |||||||| |||||||||| ||||||||| |||||||||| | ||| ||| |||| ||||| | |||||| || ||||||||| |
|
|
| T |
4637575 |
aaaaacagtggaattagtgatgctagaaaatgagtatgtgaaatttgagagagaaacacgtgcgtgtgtgtatggaacttggatatttgagagggaatta |
4637674 |
T |
|
| Q |
101 |
ggtgatgatttaagagatgggtttgtggtttttggttcaatgaaggtaaagagatttgagttatcaatattatcaccaacccaaattcgactatctaagg |
200 |
Q |
| |
|
| | | |||| |||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
4637675 |
gcttgtacattaaaagatgggtttgtggtttttggttcaatgaaagtaaagagatttttgttattaatattatcaccaacccaaattcgtttatctaagg |
4637774 |
T |
|
| Q |
201 |
cagtagtgtttgttgagaagccacaattgatggctaaattgtaatcagggttgtatgagttagc |
264 |
Q |
| |
|
||||| ||| ||| || |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4637775 |
cagtattgtcggttaaggagccacaattgatggctaaattgtaatcagggttgtatgagttagc |
4637838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 4654217 - 4654476
Alignment:
| Q |
1 |
aaaaacaggcgaactagtgatggtagaaaatgaatatgtgaaacttgagagagagatacgcgcggttgtgagtggaatatcgatattggaaagggaatta |
100 |
Q |
| |
|
||||||||| ||| |||||||| |||||||||| ||||||||| ||||||||||||||| |||||||||| |||||| | |||| || |||||| || |
|
|
| T |
4654217 |
aaaaacaggggaagtagtgatgttagaaaatgagtatgtgaaatatgagagagagatacgtgcggttgtgaatggaatttgagtatttgagagggaacta |
4654316 |
T |
|
| Q |
101 |
ggtgatgatttaagagatgggtttgtggtttttggttcaatgaaggtaaagagatttgagttatcaatattatcaccaacccaaattcgactatctaagg |
200 |
Q |
| |
|
||| || | ||||||||||||| |||||||||||||||||||| ||||||| |||| |||||||||||| ||||||| ||||||||| ||||||||| |
|
|
| T |
4654317 |
cgtggtgttgtaagagatgggttcgtggtttttggttcaatgaaagtaaagatatttttgttatcaatattctcaccaatccaaattcgtttatctaagg |
4654416 |
T |
|
| Q |
201 |
cagtagtgtttgttgagaagccacaattgatggctaaattgtaatcagggttgtatgagt |
260 |
Q |
| |
|
|||||||| |||| | ||||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
4654417 |
tagtagtgtctgttagggagccacaatcgatagctaaattgtaatcagggttgtatgagt |
4654476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 4696552 - 4696292
Alignment:
| Q |
1 |
aaaaacaggcgaactagtgatggtagaaaatgaatatgtgaaacttgagagagagatacgcgcggttgtgagtggaatatcgatattggaaagggaatta |
100 |
Q |
| |
|
||||||||| ||| |||||||| ||| ||| || ||||||||| |||||||||||| ||| |||||||||| |||||| | |||||| || |||| ||| |
|
|
| T |
4696552 |
aaaaacaggggaagtagtgatgctaggaaaagagtatgtgaaatttgagagagagacacgtgcggttgtgaatggaatttggatatttgagagggtgtta |
4696453 |
T |
|
| Q |
101 |
ggtgatgatttaagagatgggtttgtggtttttggttcaatgaaggtaaagagatttgagttatcaatattatcaccaacccaaattcgactatctaagg |
200 |
Q |
| |
|
|||| | | ||||||||| ||||||||||||||||||| |||||| |||||| |||| ||||||| |||||||||||||||| ||||| | || ||| |
|
|
| T |
4696452 |
ggtggtattgtaagagatgtgtttgtggtttttggttcattgaaggaaaagagttttgtgttatcattattatcaccaacccatattcgtttgtcgaag- |
4696354 |
T |
|
| Q |
201 |
cagtagtgtttgttgagaagccacaattgatggctaaattgtaatcagggttgtatgagttagc |
264 |
Q |
| |
|
||||||| || |||| |||||||||||||||||||||||||| ||||| ||||||| |||| |
|
|
| T |
4696353 |
--gtagtgtctgatgaggagccacaattgatggctaaattgtaaatagggtcgtatgaggtagc |
4696292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 93 - 265
Target Start/End: Original strand, 4644505 - 4644677
Alignment:
| Q |
93 |
gggaattaggtgatgatttaagagatgggtttgtggtttttggttcaatgaaggtaaagagatttgagttatcaatattatcaccaacccaaattcgact |
192 |
Q |
| |
|
|||| ||| |||||| |||| ||||||| || |||||||||||||||||||| |||||||| |||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
4644505 |
gggatttaagtgatgttttaggagatggattagtggtttttggttcaatgaaagtaaagagttttgtgttatcattattatcaccaacccaaattcgact |
4644604 |
T |
|
| Q |
193 |
atctaaggcagtagtgtttgttgagaagccacaattgatggctaaattgtaatcagggttgtatgagttagct |
265 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||| | ||||||| ||||||| || ||||||||| ||||| |
|
|
| T |
4644605 |
atctaaggcagtagtgttcgttgaggagccacaactaatggctatattgtaaattggattgtatgaggtagct |
4644677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 4673424 - 4673670
Alignment:
| Q |
1 |
aaaaacaggcgaactagtgatggtagaaaatgaatatgtgaaacttgagagagagatacgcgcggttgtgagtggaatatcgatattggaaagggaatta |
100 |
Q |
| |
|
|||||||| ||| |||||||| |||||||||| ||||||||| |||||||||| | ||| ||| |||| ||||| | |||||| || ||||||||| |
|
|
| T |
4673424 |
aaaaacagtggaattagtgatgctagaaaatgagtatgtgaaatttgagagagaaacacgtgcgtgtgtgtatggaacttggatatttgagagggaatta |
4673523 |
T |
|
| Q |
101 |
ggtgatgatttaagagatgggtttgtggtttttggttcaatgaaggtaaagagatttgagttatcaa---tattatcaccaacccaaattcgactatcta |
197 |
Q |
| |
|
||| || | |||||||||||| ||||||||||||||||||||| ||||||||||||| ||||| || |||||||||||||||| ||||| |||| | |
|
|
| T |
4673524 |
ggttgtgttgtaagagatgggtatgtggtttttggttcaatgaaagtaaagagatttgtgttattaatattattatcaccaacccacattcggttatcga |
4673623 |
T |
|
| Q |
198 |
aggcagtagtgtttgttgagaagccacaattgatggctaaattgtaa |
244 |
Q |
| |
|
||| || | ||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
4673624 |
aggtagcattgtttgttgaggaaccacaattgatggctaaattgtaa |
4673670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 4663411 - 4663604
Alignment:
| Q |
1 |
aaaaacaggcgaactagtgatggtagaaaatgaatatgtgaaacttgagagagagatacgcgcggttgtgagtggaatatcgatattggaaagggaatta |
100 |
Q |
| |
|
||||||||| |||||| |||||||| |||||| ||||||||| ||||||| |||||||| |||||| |||||||||| |||||| |||||| ||| | |
|
|
| T |
4663411 |
aaaaacagggcaactagggatggtaggaaatgagtatgtgaaatttgagagcgagatacgtgcggttttgagtggaattgggatatttgaaaggtaatca |
4663510 |
T |
|
| Q |
101 |
gg------tgatgatttaagagatgggtttgtggtttttggttcaatgaaggtaaagagatttgagttatcaatattatcaccaacccaaattc |
188 |
Q |
| |
|
| ||| ||||||||||||| ||| | |||||||| |||| ||| | |||||| | || ||||||| ||||||||||||||||||||| |
|
|
| T |
4663511 |
tggggtagtgacaatttaagagatggattttttgtttttggctcaaggaaagaaaagagttctgtgttatcattattatcaccaacccaaattc |
4663604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University