View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2201_low_17 (Length: 259)
Name: NF2201_low_17
Description: NF2201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2201_low_17 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 14812842 - 14812584
Alignment:
| Q |
1 |
tttgtaaaagatccaaaaaggttaaaggatcctatgatttttgttcaagaacttttggacatgaaagataaatatgatagtatattaaacttggcattta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14812842 |
tttgtaaaagatccaaaaaggttaaaggatcctatgatttttgttcaagaacttttggacatgaaagataaatatgatagtatattaaacttggcattta |
14812743 |
T |
|
| Q |
101 |
atcatgatgaagaattccatggagtgctggactcatcatttgagtacattattaacttgaatcacaatttgccagagtttctttcgtcgttcttggatgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14812742 |
atcatgatgaagaattccatggagtgctggactcatcatttgagtacattattaacttgaatcacaatttgccagagtttctttcgtcgttcttggatgt |
14812643 |
T |
|
| Q |
201 |
caaattaaggaaaggtttcgaaggaaatagtgaggaaattattcttgacaaggtgatga |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14812642 |
caaattaaggaaaggtttcgaaggaaatagtgaggaaattattcttgacaaggtgatga |
14812584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 15259837 - 15259579
Alignment:
| Q |
1 |
tttgtaaaagatccaaaaaggttaaaggatcctatgatttttgttcaagaacttttggacatgaaagataaatatgatagtatattaaacttggcattta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15259837 |
tttgtaaaagatccaaaaaggttaaaggatcctatgatttttgttcaagaacttttggacatgaaagataaatatgatagtatattaaacttggcattta |
15259738 |
T |
|
| Q |
101 |
atcatgatgaagaattccatggagtgctggactcatcatttgagtacattattaacttgaatcacaatttgccagagtttctttcgtcgttcttggatgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15259737 |
atcatgatgaagaattccatggagtgctggactcatcatttgagtacattattaacttgaatcacaatttgccagagtttctttcgtcgttcttggatgt |
15259638 |
T |
|
| Q |
201 |
caaattaaggaaaggtttcgaaggaaatagtgaggaaattattcttgacaaggtgatga |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15259637 |
caaattaaggaaaggtttcgaaggaaatagtgaggaaattattcttgacaaggtgatga |
15259579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 17521338 - 17521592
Alignment:
| Q |
1 |
tttgtaaaagatccaaaaaggttaaaggatcctatgatttttgttcaagaacttttggacatgaaagataaatatgatagtatattaaacttggcattta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17521338 |
tttgtaaaagatccaaaaaggttaaaggatcctatgatttttgttcaagaacttttggacatgaaagataaatatgatagtatattaaacttggcattta |
17521437 |
T |
|
| Q |
101 |
atcatgatgaagaattccatggagtgctggactcatcatttgagtacattattaacttgaatcacaatttgccagagtttctttcgtcgttcttggatgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17521438 |
atcatgatgaagaattccatggagtgctggactcatcatttgagtacattattaacttgaatcacaatttgccagagtttctttcgtcgttcttggatgt |
17521537 |
T |
|
| Q |
201 |
caaattaaggaaaggtttcgaaggaaatagtgaggaaattattcttgacaaggtg |
255 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17521538 |
caaattaaggaaaggtttcgaaggaaatagtgaggaaattattcttgacaaggtg |
17521592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University