View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2201_low_18 (Length: 253)
Name: NF2201_low_18
Description: NF2201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2201_low_18 |
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| [»] scaffold0011 (1 HSPs) |
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Alignment Details
Target: scaffold0011 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 25 - 250
Target Start/End: Original strand, 240235 - 240457
Alignment:
| Q |
25 |
tcatgtaatcatgttgcatcaaatgaagaaggacggtccttggatattagaggatgcttgtgtatttgacttgatatgggtgnnnnnnngtatgtgtgtg |
124 |
Q |
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| T |
240235 |
tcatgtaatcatgttgcatcaaatggagaaggacggtccttggatattagaggatgcttgtgtatttgacttgatatgggtgtttttttgtatgtgtgtg |
240334 |
T |
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| Q |
125 |
gcatattttatgtgactatttttacttgcttatattgcatctaatcaaaacatgccaagtaattagttatagagatgttttagaaattaacctaaaaaag |
224 |
Q |
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| T |
240335 |
gcatatt--atgtgactatttt-acttacttatattgcatctaatcaaaacatgccaagtaattagttatagagatattttagaaattaacccaaaaaag |
240431 |
T |
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| Q |
225 |
tggtatcattgagtgcggtgtataca |
250 |
Q |
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|||||||||||||||||||||||||| |
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| T |
240432 |
tggtatcattgagtgcggtgtataca |
240457 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Complemental strand, 44599522 - 44599484
Alignment:
| Q |
197 |
agatgttttagaaattaacctaaaaaagtggtatcattg |
235 |
Q |
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| T |
44599522 |
agatattttagaaattaacctaaagaagtggtatcattg |
44599484 |
T |
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