View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2201_low_19 (Length: 250)

Name: NF2201_low_19
Description: NF2201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2201_low_19
NF2201_low_19
[»] chr3 (7 HSPs)
chr3 (4-250)||(34510724-34510970)
chr3 (4-250)||(27624932-27625178)
chr3 (122-250)||(34490249-34490385)
chr3 (137-250)||(34514432-34514550)
chr3 (122-182)||(34523749-34523810)
chr3 (187-250)||(27631167-27631230)
chr3 (126-184)||(34370543-34370601)


Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 4 - 250
Target Start/End: Original strand, 34510724 - 34510970
Alignment:
Q  4 ggaggagcagagaaataacacaattacgtcattgacactgaattttggcattaggttaaacaattttcaatgaagtaaccaaaaattttggcatctttag 103  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  34510724 ggagtagcagacaaataacacaattacgtcattgacactgaattttggcattaggttaaacaattttcaatgaagtaaccaaacattttggcatctttag 34510823  T
Q  104 gcaaaagcattatgcttcttgcggggaaaatcagaaactgaaaaaggagagggataagaaaagtcatggttcaaactcaaattgaaagaaaaacaattac 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34510824 gcaaaagcattatgcttcttgcggggaaaatcagaaactgaaaaagcagagggataagaaaagtcatggttcaaactcaaattgaaagaaaaacaattac 34510923  T
Q  204 catagtaaaagtgattgttgctgtcatcattggtcatcttcaccatt 250  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  34510924 catagtaaaagtgattgttgctgtcatcattggtcatcttcaccatt 34510970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 4 - 250
Target Start/End: Original strand, 27624932 - 27625178
Alignment:
Q  4 ggaggagcagagaaataacacaattacgtcattgacactgaattttggcattaggttaaacaattttcaatgaagtaaccaaaaattttggcatctttag 103  Q
    |||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  27624932 ggagtagcagacaaataacacaattacgtcatttacactgaattttggcattaggttaaacaattttcaatgaagtaaccaaatattttggcatctttag 27625031  T
Q  104 gcaaaagcattatgcttcttgcggggaaaatcagaaactgaaaaaggagagggataagaaaagtcatggttcaaactcaaattgaaagaaaaacaattac 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27625032 gcaaaagcattatgcttcttgcggggaaaatcagaaactgaaaaagcagagggataagaaaagtcatggttcaaactcaaattgaaagaaaaacaattac 27625131  T
Q  204 catagtaaaagtgattgttgctgtcatcattggtcatcttcaccatt 250  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  27625132 catagtaaaagtgattgttgctgtcatcattggtcatcttcaccatt 27625178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 122 - 250
Target Start/End: Original strand, 34490249 - 34490385
Alignment:
Q  122 ttgcggggaaaatcagaaactgaaaaagga-gagggataagaaaagtcatggttcaaactcaaattgaa-------agaaaaacaattaccatagtaaaa 213  Q
    |||||||||| | |||||||||||||| |  |||||||||||||||||||||||||||||||||| |||       |||||||||| |||||||||| ||    
T  34490249 ttgcggggaagagcagaaactgaaaaaagttgagggataagaaaagtcatggttcaaactcaaatggaagagggaaagaaaaacaactaccatagtagaa 34490348  T
Q  214 gtgattgttgctgtcatcattggtcatcttcaccatt 250  Q
    |||||||||| ||||||||| || |||||||||||||    
T  34490349 gtgattgttgttgtcatcatcggccatcttcaccatt 34490385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 137 - 250
Target Start/End: Original strand, 34514432 - 34514550
Alignment:
Q  137 gaaactgaaaaaggagagggataagaaaagtcatggttcaaactcaaattgaa-------agaaaaacaattaccatagtaaaagtgattgttgctgtca 229  Q
    ||||||||||||  |||||||| |||||||||||||||||||||||||| |||       |||||| ||| ||| ||||||||||||||||||| |||||    
T  34514432 gaaactgaaaaa--agagggatgagaaaagtcatggttcaaactcaaatggaagagggaaagaaaagcaactactatagtaaaagtgattgttgttgtca 34514529  T
Q  230 tcattggtcatcttcaccatt 250  Q
    |||| |  |||||||||||||    
T  34514530 tcatcgaccatcttcaccatt 34514550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 122 - 182
Target Start/End: Original strand, 34523749 - 34523810
Alignment:
Q  122 ttgcggggaaaatcagaaactgaaaaagg-agagggataagaaaagtcatggttcaaactca 182  Q
    |||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||    
T  34523749 ttgcggggaaaagcagaaactgaaaaaagcagagggataagaaaagtcatggttcaaactca 34523810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 187 - 250
Target Start/End: Original strand, 27631167 - 27631230
Alignment:
Q  187 gaaagaaaaacaattaccatagtaaaagtgattgttgctgtcatcattggtcatcttcaccatt 250  Q
    ||||||||| ||| ||||||||||||||||||||||| ||||||||| |  |||||||||||||    
T  27631167 gaaagaaaagcaactaccatagtaaaagtgattgttgttgtcatcatcgaccatcttcaccatt 27631230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 184
Target Start/End: Complemental strand, 34370601 - 34370543
Alignment:
Q  126 ggggaaaatcagaaactgaaaaaggagagggataagaaaagtcatggttcaaactcaaa 184  Q
    |||||||| ||||||||||||||| | |||||||||||||| |||  ||||| ||||||    
T  34370601 ggggaaaagcagaaactgaaaaagcatagggataagaaaagccatatttcaagctcaaa 34370543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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