View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2201_low_2 (Length: 615)
Name: NF2201_low_2
Description: NF2201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2201_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 10 - 337
Target Start/End: Complemental strand, 4953718 - 4953391
Alignment:
| Q |
10 |
tatgattataattccaatggttctctctataatcatctttgttgtgtacataatagtggcatgaaaattgaacctcttacatggaaacaaaggctaaaaa |
109 |
Q |
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| T |
4953718 |
tatgattataattccaatggttctctctataatcatctttgttgtgtacataatagtggcatgaaaattgaacctcttacatggaaacaaaggctaaaaa |
4953619 |
T |
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| Q |
110 |
tttgcattggagcagcatgtggagtacactatcttcacacaggaacaaaatgtaccatttttcattgtgacattcaacctcataaaattttataggatag |
209 |
Q |
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| T |
4953618 |
tttgcattggagcagcatgtggagtacactatcttcacacaggaacaaaacgtaccatttttcattgtgacattcaacctcataaaattttattggatag |
4953519 |
T |
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| Q |
210 |
taacatggtgcctaaactctcagatttttggacttcattgcaaggacctttgtttactgattcaatgccgaaaccaaagtccatattaagtgataacatt |
309 |
Q |
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| T |
4953518 |
taacatggtgcctaaactctcagatttttggacttcattgcaaggacctttgtttactgattcaatgccgaaaccaaagtccatattaagtgataacatt |
4953419 |
T |
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| Q |
310 |
ataggtatgtacccttttctctatcatt |
337 |
Q |
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| T |
4953418 |
ataggtatgtacccttttctctaccatt |
4953391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 489 - 612
Target Start/End: Complemental strand, 4953396 - 4953274
Alignment:
| Q |
489 |
accattgcttcattaa--aagaaaaatataacaccaacatgccatgatttccggccaggcaaaattgtgattggccaatatgctttttgggacggtattg |
586 |
Q |
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| T |
4953396 |
accattgcttcattaagaaaaaaaaatataacacca---tgccatgatttctggccaggcaaaattgtgattggccaatatgctttttgggacggtattg |
4953300 |
T |
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| Q |
587 |
tgataaaattattctagaaatataac |
612 |
Q |
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| T |
4953299 |
tgataaaattattctagaaatataac |
4953274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 432 - 600
Target Start/End: Original strand, 3265977 - 3266148
Alignment:
| Q |
432 |
tgattggtttcaagaatgatgtggcatgtttgtgttccttagatttcaannnnnnn-caccattgcttcattaaaagaaaa-atataacaccaacatgcc |
529 |
Q |
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| T |
3265977 |
tgattgatttcaagaatgatgtgaaatgttagtgtcccttagatttcaatttattttcactatcacttcattaaacaaaaatatgtaagaccagcatacc |
3266076 |
T |
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| Q |
530 |
atgatttccggccaggcaaaattgtgatt-ggccaatatgctttttgggacggtattgtgataaaattattc |
600 |
Q |
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| T |
3266077 |
atgatttccggccaggcaaaattttgattaggcaattatgtttttcgggacgcgatcgtggtaaaattattc |
3266148 |
T |
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