View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2201_low_21 (Length: 239)
Name: NF2201_low_21
Description: NF2201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2201_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 27625329 - 27625548
Alignment:
| Q |
1 |
atttcacattcagaaagacaatactgatactgagtaaaattctttctacattaccctttaaattatcaatcaatatagtaattataacaatagtaggtta |
100 |
Q |
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| T |
27625329 |
atttcacattcagaaagacaatactgatactgagtaaaattctttctacattaccctttaaattatcaatcaatatagtaattataacaatagtaggtta |
27625428 |
T |
|
| Q |
101 |
atgaaaagcttagacttatatcacaagatttagagaaaccatctgagttgtatctcaagtcaataaatacaagctatttaagtgggtgtatgtactagca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27625429 |
atgaaaagcttagacttatatcacaagatttagagaaaccatctgagttgtatctcaagtcaataaatacaagctatttaagtgggtgtatgtactagca |
27625528 |
T |
|
| Q |
201 |
tacactatgtggctccctta |
220 |
Q |
| |
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||||||||||| |||||||| |
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| T |
27625529 |
tacactatgtgactccctta |
27625548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 3 - 220
Target Start/End: Original strand, 34511104 - 34511321
Alignment:
| Q |
3 |
ttcacattcagaaagacaatactgatactgagtaaaattctttctacattaccctttaaattatcaatcaatatagtaattataacaatagtaggttaat |
102 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34511104 |
ttcacattcagaaagacaatattgatactgagtaaaattctttctacattaccctttaaattatcaatcaatatagtaattataacaatagtaggttaat |
34511203 |
T |
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| Q |
103 |
gaaaagcttagacttatatcacaagatttagagaaaccatctgagttgtatctcaagtcaataaatacaagctatttaagtgggtgtatgtactagcata |
202 |
Q |
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| T |
34511204 |
gaaaagcttagacttatatcacaagatttagagaaaccatctgagttgtatctcaagtcaataaatacaagctatttaagtgggtgtatgtactagcata |
34511303 |
T |
|
| Q |
203 |
cactatgtggctccctta |
220 |
Q |
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||||||||| |||||||| |
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| T |
34511304 |
cactatgtgactccctta |
34511321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 70 - 190
Target Start/End: Original strand, 34477170 - 34477289
Alignment:
| Q |
70 |
tcaatatagtaattataacaatagtaggttaatgaaaagcttagacttatatcacaagatttagagaaaccatctgagttgtatctcaagtcaataaata |
169 |
Q |
| |
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|||||||||||||||||| ||||| |||||| | | |||| ||||||| |||| | ||||||||||||||||||| ||| |||||||||||||||||| |
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| T |
34477170 |
tcaatatagtaattataataatagcaggttactccatagct-agacttagatcatgatatttagagaaaccatctgaattgcatctcaagtcaataaata |
34477268 |
T |
|
| Q |
170 |
caagctatttaagtgggtgta |
190 |
Q |
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||||||||||||||| ||||| |
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| T |
34477269 |
caagctatttaagtgagtgta |
34477289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 126 - 190
Target Start/End: Original strand, 34462372 - 34462436
Alignment:
| Q |
126 |
agatttagagaaaccatctgagttgtatctcaagtcaataaatacaagctatttaagtgggtgta |
190 |
Q |
| |
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| T |
34462372 |
agatttagagaaaccatctgaattgcatctcaagtcaataaatacaagctatttaagtgggtgta |
34462436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 72 - 187
Target Start/End: Original strand, 27616228 - 27616342
Alignment:
| Q |
72 |
aatatagtaattataacaatagtaggttaatgaaaagcttagacttatatcacaagatttagagaaaccatctgagttgtatctcaagtcaataaataca |
171 |
Q |
| |
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||||| ||||||| || ||||||||| | || |||||| ||||||| |||| |||||||||||||||| | || |||||||||||||||| ||||||| |
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| T |
27616228 |
aatatcgtaattagaatcatagtaggtaagtgcaaagct-agacttagatcatgagatttagagaaaccaacagatttgtatctcaagtcaacaaataca |
27616326 |
T |
|
| Q |
172 |
agctatttaagtgggt |
187 |
Q |
| |
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|||||| |||||||| |
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|
| T |
27616327 |
ggctattgaagtgggt |
27616342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 72 - 184
Target Start/End: Original strand, 34505079 - 34505190
Alignment:
| Q |
72 |
aatatagtaattataacaatagtaggttaatgaaaagcttagacttatatcacaagatttagagaaaccatctgagttgtatctcaagtcaataaataca |
171 |
Q |
| |
|
||||| ||||||| || ||||||||| | || |||||| ||||||| |||| |||||||||||||||| | || |||||||||||||||| ||||||| |
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| T |
34505079 |
aatatcgtaattagaatcatagtaggtaagtgcaaagct-agacttagatcatgagatttagagaaaccaacagaattgtatctcaagtcaacaaataca |
34505177 |
T |
|
| Q |
172 |
agctatttaagtg |
184 |
Q |
| |
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|||||| ||||| |
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| T |
34505178 |
ggctattaaagtg |
34505190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 189
Target Start/End: Original strand, 34516670 - 34516786
Alignment:
| Q |
72 |
aatatagtaattataacaatagtaggttaatgaaaagcttagacttatatcacaagatttagagaaaccatctgagttgtatctcaagtcaataaataca |
171 |
Q |
| |
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||||||||||||| || ||||||||||| || || || || |||| |||| |||||||||||||| ||| || |||||||||||||||| ||||||| |
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| T |
34516670 |
aatatagtaattacaattatagtaggttagtgcaaccct-agccttagatcatgagatttagagaaacaatcagaattgtatctcaagtcaacaaataca |
34516768 |
T |
|
| Q |
172 |
agctatttaagtgggtgt |
189 |
Q |
| |
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|||||| ||||| |||| |
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|
| T |
34516769 |
ggctattaaagtgagtgt |
34516786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 110 - 184
Target Start/End: Original strand, 34525876 - 34525950
Alignment:
| Q |
110 |
ttagacttatatcacaagatttagagaaaccatctgagttgtatctcaagtcaataaatacaagctatttaagtg |
184 |
Q |
| |
|
||||||||| |||| | |||||||||||||||| | |||||||||||||||| ||||||| |||||| ||||| |
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| T |
34525876 |
ttagacttagatcatgatatttagagaaaccatcataattgtatctcaagtcaacaaatacaggctattaaagtg |
34525950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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