View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2201_low_22 (Length: 237)

Name: NF2201_low_22
Description: NF2201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2201_low_22
NF2201_low_22
[»] chr1 (3 HSPs)
chr1 (1-201)||(36295235-36295441)
chr1 (18-109)||(9843130-9843222)
chr1 (21-95)||(2397455-2397530)
[»] chr6 (1 HSPs)
chr6 (27-95)||(26308672-26308741)
[»] chr4 (2 HSPs)
chr4 (48-93)||(51995386-51995431)
chr4 (18-95)||(47564641-47564719)
[»] chr7 (1 HSPs)
chr7 (18-95)||(44012754-44012832)
[»] scaffold0256 (1 HSPs)
scaffold0256 (44-95)||(18205-18256)
[»] scaffold0023 (1 HSPs)
scaffold0023 (44-95)||(49457-49508)
[»] chr8 (1 HSPs)
chr8 (21-95)||(28892643-28892718)
[»] chr3 (1 HSPs)
chr3 (44-96)||(54190386-54190438)


Alignment Details
Target: chr1 (Bit Score: 172; Significance: 1e-92; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 36295441 - 36295235
Alignment:
Q  1 tttattttctaagaggttgtcattctttaaaattttaaaggtgtcacttttatgttttaaaatgtgaactcatactcttctagaataatcatcaaccatc 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36295441 tttattgtctaagaggttgtcattctttaaaattttaaaggtgtcacttttatgttttaaaatgtgaactcatactcttctagaataatcatcaaccatc 36295342  T
Q  101 ataagaaaataggaccacccctatga------gttgttgttggactccaacgatccgagtgaacatactaacaaggtctactagaatgatacatatcatt 194  Q
    |||| ||||||||| |||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36295341 ataaaaaaataggaacacccctatgagttattgttgttgttggactccaacgatccgagtgaacatactaacaaggtctactagaatgatacatatcatt 36295242  T
Q  195 cccaaac 201  Q
    |||||||    
T  36295241 cccaaac 36295235  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 9843222 - 9843130
Alignment:
Q  18 tgtcattctttaaaatttt-aaaggtgtcacttttatgttttaaaatgtgaactcatactcttctagaataatcatcaaccatcataagaaaa 109  Q
    |||||| | |||||||||| ||| ||| || | |||||||||||||| ||||||||||||||||||||||||||| ||| |||  ||||||||    
T  9843222 tgtcataccttaaaattttcaaaagtgacattcttatgttttaaaatttgaactcatactcttctagaataatcaccaatcatagtaagaaaa 9843130  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 95
Target Start/End: Original strand, 2397455 - 2397530
Alignment:
Q  21 cattctttaaaatttt-aaaggtgtcacttttatgttttaaaatgtgaactcatactcttctagaataatcatcaa 95  Q
    ||||||||||| |||| ||| |||||||||||||  || | ||||| ||| |||||||||||||||||||||||||    
T  2397455 cattctttaaatttttcaaaagtgtcacttttattcttcagaatgtaaacccatactcttctagaataatcatcaa 2397530  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 27 - 95
Target Start/End: Original strand, 26308672 - 26308741
Alignment:
Q  27 ttaaaatttt-aaaggtgtcacttttatgttttaaaatgtgaactcatactcttctagaataatcatcaa 95  Q
    |||||||||| |||||||||||||||||||| || ||| |||| || |||||||||||||||||||||||    
T  26308672 ttaaaattttcaaaggtgtcacttttatgttatataatatgaattcgtactcttctagaataatcatcaa 26308741  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 48 - 93
Target Start/End: Original strand, 51995386 - 51995431
Alignment:
Q  48 ttttatgttttaaaatgtgaactcatactcttctagaataatcatc 93  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||    
T  51995386 ttttatgttttaaaatgtgaaatcatactcttctagaataatcatc 51995431  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 95
Target Start/End: Complemental strand, 47564719 - 47564641
Alignment:
Q  18 tgtcattctttaaaatttt-aaaggtgtcacttttatgttttaaaatgtgaactcatactcttctagaataatcatcaa 95  Q
    |||||||||||||| |||| ||| | |||||||||||  || | ||||| ||| ||||| |||||||||||||||||||    
T  47564719 tgtcattctttaaatttttcaaaagcgtcacttttattcttcagaatgtaaacccatacccttctagaataatcatcaa 47564641  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 44012754 - 44012832
Alignment:
Q  18 tgtcattctttaaaatttt-aaaggtgtcacttttatgttttaaaatgtgaactcatactcttctagaataatcatcaa 95  Q
    |||||||||||||| |||| ||| | |||||||||||  || | ||||| ||||||||| |||||||||||||||||||    
T  44012754 tgtcattctttaaatttttcaaaagcgtcacttttattcttcataatgtaaactcatacccttctagaataatcatcaa 44012832  T

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Target: scaffold0256 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 95
Target Start/End: Complemental strand, 18256 - 18205
Alignment:
Q  44 tcacttttatgttttaaaatgtgaactcatactcttctagaataatcatcaa 95  Q
    ||||||||||  || | ||||| |||||||||||||||||||||||||||||    
T  18256 tcacttttattcttcagaatgtaaactcatactcttctagaataatcatcaa 18205  T

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Target: scaffold0023 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 95
Target Start/End: Original strand, 49457 - 49508
Alignment:
Q  44 tcacttttatgttttaaaatgtgaactcatactcttctagaataatcatcaa 95  Q
    ||||||||||  || | ||||| |||||||||||||||||||||||||||||    
T  49457 tcacttttattcttcagaatgtaaactcatactcttctagaataatcatcaa 49508  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 95
Target Start/End: Complemental strand, 28892718 - 28892643
Alignment:
Q  21 cattctttaaaatttt-aaaggtgtcacttttatgttttaaaatgtgaactcatactcttctagaataatcatcaa 95  Q
    |||||||| || |||| ||||| |||||||||||  || | ||||| ||| |||||||||||||||||||||||||    
T  28892718 cattctttgaatttttcaaaggcgtcacttttattcttcagaatgtaaacccatactcttctagaataatcatcaa 28892643  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 96
Target Start/End: Complemental strand, 54190438 - 54190386
Alignment:
Q  44 tcacttttatgttttaaaatgtgaactcatactcttctagaataatcatcaac 96  Q
    ||||||||||  || | ||||| ||| ||||||||||||||||||||||||||    
T  54190438 tcacttttattcttcagaatgtaaacccatactcttctagaataatcatcaac 54190386  T

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