View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2201_low_23 (Length: 234)

Name: NF2201_low_23
Description: NF2201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2201_low_23
NF2201_low_23
[»] chr5 (10 HSPs)
chr5 (17-219)||(244918-245120)
chr5 (17-219)||(29949589-29949791)
chr5 (17-219)||(29951227-29951429)
chr5 (17-126)||(38936719-38936828)
chr5 (18-209)||(16780615-16780804)
chr5 (17-91)||(21352695-21352769)
chr5 (17-79)||(21352608-21352670)
chr5 (34-143)||(23660940-23661049)
chr5 (34-143)||(23797521-23797630)
chr5 (40-189)||(258977-259125)
[»] chr4 (16 HSPs)
chr4 (17-219)||(15018120-15018322)
chr4 (17-219)||(15019760-15019962)
chr4 (17-219)||(9399099-9399301)
chr4 (17-219)||(13518440-13518642)
chr4 (17-219)||(39488630-39488832)
chr4 (18-201)||(13517922-13518105)
chr4 (17-199)||(11098501-11098684)
chr4 (17-91)||(46690510-46690584)
chr4 (17-197)||(42872931-42873110)
chr4 (17-102)||(21377203-21377287)
chr4 (25-220)||(24663898-24664095)
chr4 (17-103)||(18281342-18281427)
chr4 (34-167)||(19457618-19457750)
chr4 (15-88)||(22473679-22473750)
chr4 (114-212)||(30874982-30875080)
chr4 (36-107)||(19455904-19455975)
[»] chr1 (11 HSPs)
chr1 (17-219)||(36233310-36233512)
chr1 (17-210)||(36233845-36234038)
chr1 (17-219)||(24157533-24157735)
chr1 (18-219)||(20189277-20189478)
chr1 (17-219)||(20190910-20191112)
chr1 (18-215)||(48463841-48464035)
chr1 (11-219)||(48462802-48463009)
chr1 (17-184)||(20759108-20759273)
chr1 (17-187)||(40553905-40554074)
chr1 (17-104)||(31390151-31390237)
chr1 (17-104)||(40554650-40554736)
[»] chr7 (9 HSPs)
chr7 (17-219)||(9647415-9647617)
chr7 (17-219)||(23446664-23446866)
chr7 (17-219)||(40998699-40998901)
chr7 (17-219)||(7842678-7842880)
chr7 (18-219)||(9595916-9596117)
chr7 (17-219)||(41000558-41000761)
chr7 (18-219)||(9646879-9647080)
chr7 (17-58)||(24790124-24790165)
chr7 (17-58)||(24790156-24790197)
[»] chr3 (11 HSPs)
chr3 (17-219)||(5554271-5554473)
chr3 (17-219)||(16346636-16346838)
chr3 (17-219)||(16022632-16022834)
chr3 (17-219)||(23460204-23460406)
chr3 (17-219)||(47418456-47418658)
chr3 (17-219)||(5553200-5553402)
chr3 (17-219)||(25531638-25531840)
chr3 (17-198)||(47566478-47566660)
chr3 (50-210)||(32570515-32570674)
chr3 (17-191)||(2683487-2683660)
chr3 (63-109)||(25532821-25532867)
[»] chr2 (10 HSPs)
chr2 (17-219)||(18535782-18535984)
chr2 (17-219)||(22300376-22300578)
chr2 (24-219)||(24806764-24806959)
chr2 (17-219)||(24808620-24808823)
chr2 (17-158)||(31974034-31974175)
chr2 (17-139)||(22299692-22299814)
chr2 (17-199)||(44793309-44793490)
chr2 (24-76)||(24806099-24806151)
chr2 (17-104)||(44792617-44792703)
chr2 (110-139)||(31973965-31973994)
[»] scaffold0025 (1 HSPs)
scaffold0025 (24-219)||(54866-55061)
[»] chr8 (8 HSPs)
chr8 (17-219)||(8366109-8366311)
chr8 (17-219)||(17278155-17278356)
chr8 (17-199)||(17277411-17277593)
chr8 (17-167)||(6778187-6778336)
chr8 (17-199)||(17857165-17857346)
chr8 (17-88)||(23016372-23016442)
chr8 (17-58)||(17277679-17277720)
chr8 (17-104)||(23016690-23016776)
[»] scaffold0018 (1 HSPs)
scaffold0018 (17-219)||(564-767)
[»] scaffold0013 (1 HSPs)
scaffold0013 (17-219)||(241048-241250)
[»] scaffold0146 (1 HSPs)
scaffold0146 (17-186)||(31593-31762)
[»] scaffold0026 (2 HSPs)
scaffold0026 (17-219)||(86585-86783)
scaffold0026 (17-118)||(643-744)
[»] scaffold0096 (1 HSPs)
scaffold0096 (17-126)||(22401-22510)
[»] scaffold0021 (2 HSPs)
scaffold0021 (17-134)||(17659-17776)
scaffold0021 (17-134)||(27190-27307)
[»] scaffold0269 (2 HSPs)
scaffold0269 (17-106)||(1962-2049)
scaffold0269 (148-219)||(1883-1954)
[»] scaffold0094 (1 HSPs)
scaffold0094 (17-192)||(13406-13580)
[»] scaffold0321 (1 HSPs)
scaffold0321 (17-199)||(5222-5403)
[»] scaffold0180 (1 HSPs)
scaffold0180 (17-199)||(11299-11479)
[»] scaffold0139 (1 HSPs)
scaffold0139 (17-199)||(4227-4408)
[»] scaffold0002 (1 HSPs)
scaffold0002 (17-163)||(375245-375390)
[»] chr6 (2 HSPs)
chr6 (17-54)||(12037064-12037101)
chr6 (17-52)||(12037018-12037053)
[»] scaffold0359 (1 HSPs)
scaffold0359 (17-59)||(8902-8944)


Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 17 - 219
Target Start/End: Complemental strand, 245120 - 244918
Alignment:
Q  17 gaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctatatc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  245120 gaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctatatc 245021  T
Q  117 tggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagatcaaattcggaata 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  245020 tggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagatcaaattcgaaata 244921  T
Q  217 ttt 219  Q
    |||    
T  244920 ttt 244918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 17 - 219
Target Start/End: Original strand, 29949589 - 29949791
Alignment:
Q  17 gaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctatatc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29949589 gaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctatatc 29949688  T
Q  117 tggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagatcaaattcggaata 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  29949689 tggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctatttgattcaagatcaaattcggaata 29949788  T
Q  217 ttt 219  Q
    |||    
T  29949789 ttt 29949791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 17 - 219
Target Start/End: Original strand, 29951227 - 29951429
Alignment:
Q  17 gaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctatatc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29951227 gaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctatatc 29951326  T
Q  117 tggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagatcaaattcggaata 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  29951327 tggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctatttgattcaagatcaaattcggaata 29951426  T
Q  217 ttt 219  Q
    |||    
T  29951427 ttt 29951429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 17 - 126
Target Start/End: Original strand, 38936719 - 38936828
Alignment:
Q  17 gaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctatatc 116  Q
    ||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||     
T  38936719 gaataataaagtcattgtgaaataaaagaaccaaatcaattttgggttcaaaattttattttcgtaggtcatgatatgtctgtcttgttttggctatata 38936818  T
Q  117 tggagctctg 126  Q
    ||||||||||    
T  38936819 tggagctctg 38936828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 18 - 209
Target Start/End: Original strand, 16780615 - 16780804
Alignment:
Q  18 aataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctatatct 117  Q
    |||||||||||||||||| ||||||||||   |||||||||||| ||||| ||||||||||||||| ||||||| ||| ||||||||||||||||||||     
T  16780615 aataataaagtcattgtg-aataaaagaattgaattaattttgg-ttcaatgttttattttcgtagttcatgatgtgtttgtcttgttttggctatatcc 16780712  T
Q  118 ggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagatcaaatt 209  Q
    |||  |||||||||||| |||||| ||||||| | || ||||||| ||||  || || ||| |||||| ||||||| |||||||| ||||||    
T  16780713 ggaattctggatgtccgattgaggcgatctttgagtccttggaaatcttagaaagttatctgcatttcgtctgtttaactcaagaacaaatt 16780804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 21352769 - 21352695
Alignment:
Q  17 gaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgat 91  Q
    |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  21352769 gaataataaagtcattatggaataaaagaacctaattaattttgggttcaaagttttattttcgtaggtcatgat 21352695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 21352608 - 21352670
Alignment:
Q  17 gaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttc 79  Q
    |||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||    
T  21352608 gaataataaagtcattatggaataaaagaacctaattaattttggattcaaagttttattttc 21352670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 34 - 143
Target Start/End: Original strand, 23660940 - 23661049
Alignment:
Q  34 tggaataaaa-gaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctatatctggagctctggatgtc 132  Q
    |||||||||| |||||||||||||||||| ||||| || |||||||||||||| || ||||| |||||||||||| |  |||||| ||| | ||||||||    
T  23660940 tggaataaaatgaaccaaattaattttggtttcaa-gtattattttcgtaggtgattatatgactgtcttgtttttgtcatatctagagttatggatgtc 23661038  T
Q  133 cgtttgaggtg 143  Q
    || ||||||||    
T  23661039 cgattgaggtg 23661049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 34 - 143
Target Start/End: Complemental strand, 23797630 - 23797521
Alignment:
Q  34 tggaataaaa-gaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctatatctggagctctggatgtc 132  Q
    |||||||||| |||||||||||||||||| ||||| || |||||||||||||| || ||||| |||||||||||| |  |||||| ||| | ||||||||    
T  23797630 tggaataaaatgaaccaaattaattttggtttcaa-gtattattttcgtaggtgattatatgactgtcttgtttttgtcatatctagagttatggatgtc 23797532  T
Q  133 cgtttgaggtg 143  Q
    || ||||||||    
T  23797531 cgattgaggtg 23797521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 189
Target Start/End: Original strand, 258977 - 259125
Alignment:
Q  40 aaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctatatctggagctctggatgtccgtttga 139  Q
    ||||||||||||||| |||||| ||| |||| ||||||| ||| || |||  |  |||||||||||| |||||||||| ||||||| |||||||  ||||    
T  258977 aaaagaaccaaattagttttgg-ttcgaagtgttatttttgtaagtgatgtcacctctgtcttgtttcggctatatcttgagctctagatgtccaattga 259075  T
Q  140 ggtgatctttaactcgttggaaagcttacgaaattctctacatttcatct 189  Q
     ||||| ||| | |||  ||||||||||   |||| |||||| |||||||    
T  259076 cgtgatatttgattcgacggaaagcttagagaattgtctacaattcatct 259125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 17 - 219
Target Start/End: Complemental strand, 15018322 - 15018120
Alignment:
Q  17 gaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctatatc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15018322 gaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctatatc 15018223  T
Q  117 tggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagatcaaattcggaata 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  15018222 tggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagatcaaattcgaaata 15018123  T
Q  217 ttt 219  Q
    |||    
T  15018122 ttt 15018120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 17 - 219
Target Start/End: Complemental strand, 15019962 - 15019760
Alignment:
Q  17 gaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctatatc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15019962 gaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctatatc 15019863  T
Q  117 tggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagatcaaattcggaata 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  15019862 tggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagatcaaattcgaaata 15019763  T
Q  217 ttt 219  Q
    |||    
T  15019762 ttt 15019760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 17 - 219
Target Start/End: Complemental strand, 9399301 - 9399099
Alignment:
Q  17 gaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctatatc 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  9399301 gaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctatata 9399202  T
Q  117 tggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagatcaaattcggaata 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  9399201 tggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcgtctgtttgactcaagagcaaattcggaata 9399102  T
Q  217 ttt 219  Q
    |||    
T  9399101 ttt 9399099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 17 - 219
Target Start/End: Complemental strand, 13518642 - 13518440
Alignment:
Q  17 gaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctatatc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13518642 gaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctatatc 13518543  T
Q  117 tggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagatcaaattcggaata 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  13518542 tggagctctggatgtccgtttgaggtgatctttaactcgttggaaaacttacgaaattctctacatttcatctgtttgactcaagtgcaaattcggaata 13518443  T
Q  217 ttt 219  Q
    |||    
T  13518442 ttt 13518440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 17 - 219
Target Start/End: Complemental strand, 39488832 - 39488630
Alignment:
Q  17 gaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctatatc 116  Q
    |||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  39488832 gaataataaattcattatggaataaaagaacctaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttattttggctatatc 39488733  T
Q  117 tggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagatcaaattcggaata 216  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||| || |||||    
T  39488732 tggagctctagatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctccacaattcatctgtttgactcaagagcaaactcagaata 39488633  T
Q  217 ttt 219  Q
    |||    
T  39488632 ttt 39488630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 13518105 - 13517922
Alignment:
Q  18 aataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctatatct 117  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||    
T  13518105 aataataaagttattgtggaataaaagaaccaaattaactttgggttcaaagttttattttcgtagatcatgatatgtctgtcttgttttggctatgtct 13518006  T
Q  118 ggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaag 201  Q
    ||||||   ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13518005 ggagcttccgatgttcgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaag 13517922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 17 - 199
Target Start/End: Original strand, 11098501 - 11098684
Alignment:
Q  17 gaataataaagtcattgtggaataaaagaaccaaa-ttaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctatat 115  Q
    |||||||||| ||||| ||||||||||||| |||| ||| |||| |||||||| | ||||||||||||||||| || | |||||||||| ||    ||||    
T  11098501 gaataataaattcattatggaataaaagaatcaaatttattttttggttcaaattgttattttcgtaggtcattatgtatctgtcttgtattcatcatat 11098600  T
Q  116 ctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattc-tctacatttcatctgtttgactca 199  Q
    || ||||||||||  |||| |||||||||||||| |  ||||||||||  ||| |||||| |||||||||||| |||| ||||||    
T  11098601 ctagagctctggaactccgattgaggtgatctttgaagcgttggaaagggtac-aaattcatctacatttcatatgttggactca 11098684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 46690510 - 46690584
Alignment:
Q  17 gaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgat 91  Q
    |||||||||||||| |||||||||||||||| |||||||||||   || ||||||||||||||||||||||||||    
T  46690510 gaataataaagtcagtgtggaataaaagaactaaattaattttaaatttaaagttttattttcgtaggtcatgat 46690584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 17 - 197
Target Start/End: Complemental strand, 42873110 - 42872931
Alignment:
Q  17 gaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctatatc 116  Q
    |||||||||| ||||| ||||||||||||| |||||| ||||| |||||||| | ||||||||||||||||| || | | |||||||| ||    |||||    
T  42873110 gaataataaattcattatggaataaaagaatcaaatt-atttttggttcaaattgttattttcgtaggtcattatgtatatgtcttgtattcatcatatc 42873012  T
Q  117 tggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattc-tctacatttcatctgtttgact 197  Q
    | ||||||||||   ||| |||||||||||||| |  ||||||||||  ||| |||||| |||||||||||| |||| ||||    
T  42873011 tagagctctggaatcccgattgaggtgatctttgaagcgttggaaagggtac-aaattcatctacatttcatatgttggact 42872931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 102
Target Start/End: Original strand, 21377203 - 21377287
Alignment:
Q  17 gaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtctt 102  Q
    |||||||||||||| | |||||||||||||||||||| ||||| |||||| | ||||||||||||||||||| || | ||||||||    
T  21377203 gaataataaagtcaatatggaataaaagaaccaaatt-atttttggttcagatttttattttcgtaggtcattatgtatctgtctt 21377287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 25 - 220
Target Start/End: Complemental strand, 24664095 - 24663898
Alignment:
Q  25 aagtcattgtggaataaaagaaccaaattaattttgggttcaaagtttt-attttcgta--ggtcatgatatgtctgtcttgttttggctatatctggag 121  Q
    |||| ||| ||| |||| |||||||||||| |||||| ||||||||||| || ||||||  | |||| |||| |||||||||||||| | |||||| |||    
T  24664095 aagttattatggcataagagaaccaaattatttttgg-ttcaaagtttttatattcgtatagatcattatatatctgtcttgttttgtccatatctagag 24663997  T
Q  122 ctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagatcaaattcggaatatttt 220  Q
     | | |||||||| |||| |  |||||||| | |||||||||||||  || || ||| |||||||||| || |  ||||||||||| |||  |||||||    
T  24663996 atgtcgatgtccgattgatgcaatctttaatttgttggaaagcttagaaatttatctgcatttcatcttttggggtcaagatcaaaatcgacatatttt 24663898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 103
Target Start/End: Complemental strand, 18281427 - 18281342
Alignment:
Q  17 gaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttg 103  Q
    |||||||||||||||| | ||||||||||| |||||| ||||| ||||||||   ||||||||||||||||| || | |||||||||    
T  18281427 gaataataaagtcattatcgaataaaagaatcaaatt-atttttggttcaaatagttattttcgtaggtcattatgtatctgtcttg 18281342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 34 - 167
Target Start/End: Original strand, 19457618 - 19457750
Alignment:
Q  34 tggaataaaa-gaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctatatctggagctctggatgtc 132  Q
    |||||||||| |||||||||||||||| |||||||||| ||||||||||  |  || ||||| |||||||||||| | ||||||| ||| |||  |||||    
T  19457618 tggaataaaatgaaccaaattaatttt-ggttcaaagtgttattttcgtttgcgat-atatggctgtcttgtttttgttatatctagagttctcaatgtc 19457715  T
Q  133 cgtttgaggtgatctttaactcgttggaaagctta 167  Q
     | || |||||||||||||  ||||||||| ||||    
T  19457716 tgattaaggtgatctttaatgcgttggaaaactta 19457750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 88
Target Start/End: Original strand, 22473679 - 22473750
Alignment:
Q  15 atgaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcat 88  Q
    |||||||||||||||||| ||||||||||||||||| ||  |||| |||||||| | |||||||||| ||||||    
T  22473679 atgaataataaagtcattatggaataaaagaaccaattt--tttttggttcaaattgttattttcgttggtcat 22473750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 114 - 212
Target Start/End: Complemental strand, 30875080 - 30874982
Alignment:
Q  114 atctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagatcaaattcgg 212  Q
    |||| |||||||||||||| |||| | ||||||||||| ||||||||||| |||  |||   |||||||||||||  ||  ||||||||||||||||||    
T  30875080 atcttgagctctggatgtctgtttaacgtgatctttaattcgttggaaagtttaaaaaaaattctacatttcatcatttaaactcaagatcaaattcgg 30874982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 107
Target Start/End: Original strand, 19455904 - 19455975
Alignment:
Q  36 gaataaaa-gaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgtttt 107  Q
    |||||||| |||||||||||||||||| ||| |||| ||||||| |||||| || |||||||||| |||||||    
T  19455904 gaataaaatgaaccaaattaattttggtttc-aagtgttatttttgtaggtgattatatgtctgttttgtttt 19455975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 17 - 219
Target Start/End: Original strand, 36233310 - 36233512
Alignment:
Q  17 gaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctatatc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36233310 gaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctatatc 36233409  T
Q  117 tggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagatcaaattcggaata 216  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  36233410 tggagctctggatgtccgtttgaggcgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagatcaaattcgaaata 36233509  T
Q  217 ttt 219  Q
    |||    
T  36233510 ttt 36233512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 17 - 210
Target Start/End: Complemental strand, 36234038 - 36233845
Alignment:
Q  17 gaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctatatc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36234038 gaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctatatc 36233939  T
Q  117 tggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagatcaaattc 210  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36233938 tggagctctggatgtccgtttgaggcgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagatcaaattc 36233845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 17 - 219
Target Start/End: Complemental strand, 24157735 - 24157533
Alignment:
Q  17 gaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctatatc 116  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  24157735 gaataataaagtcattatggaataaaagaacctaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttagctatatc 24157636  T
Q  117 tggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagatcaaattcggaata 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||    
T  24157635 tggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttaactcaagagaaaattcggaata 24157536  T
Q  217 ttt 219  Q
    |||    
T  24157535 ttt 24157533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 18 - 219
Target Start/End: Complemental strand, 20189478 - 20189277
Alignment:
Q  18 aataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctatatct 117  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20189478 aataataaagtcattgtggaataaaagaaccaaattaattttggtttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctatatct 20189379  T
Q  118 ggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagatcaaattcggaatat 217  Q
    |||| |||||||||||||||||||||||||| |||| ||||||||| |||| ||||||||||||||||||||||||||||||||| |||| |||||||||    
T  20189378 ggagttctggatgtccgtttgaggtgatcttcaacttgttggaaagtttacaaaattctctacatttcatctgtttgactcaagagcaaagtcggaatat 20189279  T
Q  218 tt 219  Q
    ||    
T  20189278 tt 20189277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 17 - 219
Target Start/End: Complemental strand, 20191112 - 20190910
Alignment:
Q  17 gaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctatatc 116  Q
    |||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  20191112 gaataataaagtcattatagaataaaagaacctaattaattttgggttcaaagttttattttcgtatgtcatgatatgtctgtcttgttttgactatatc 20191013  T
Q  117 tggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagatcaaattcggaata 216  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||    
T  20191012 tggagctttggatgtccgtttgaggtgatctttaactctttggaaagcttactaaattatctacatttcatctgtttgactcaagagcaaattcggaata 20190913  T
Q  217 ttt 219  Q
    |||    
T  20190912 ttt 20190910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 18 - 215
Target Start/End: Complemental strand, 48464035 - 48463841
Alignment:
Q  18 aataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctatatct 117  Q
    ||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  48464035 aataataaagttattgtggaataaaagaaccaaaataattttgggttcaaa-ttttatttttgtaggtcatgatatgtctgtcttgttttggctatatct 48463937  T
Q  118 ggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagatcaaattcggaat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||||||    
T  48463936 ggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctttacatttcatctgtttgactcaag--caaattcggaat 48463841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 11 - 219
Target Start/End: Original strand, 48462802 - 48463009
Alignment:
Q  11 tgagatgaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggc 110  Q
    ||||| ||||||||||||||||| | || ||||||| |||||||||||| | |||||||||||||||| |||||||||||||||| ||||||||||||||    
T  48462802 tgagaagaataataaagtcattgcgaaa-aaaagaatcaaattaattttagattcaaagttttatttttgtaggtcatgatatgtatgtcttgttttggc 48462900  T
Q  111 tatatctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagatcaaattc 210  Q
    ||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||    
T  48462901 tatatttggagctctggatatccgtttgatgtgatctttaactcgttggaaagcttacgaaattctctacatttcatctatttgattcaagagcaaattc 48463000  T
Q  211 ggaatattt 219  Q
    |||||||||    
T  48463001 ggaatattt 48463009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 17 - 184
Target Start/End: Original strand, 20759108 - 20759273
Alignment:
Q  17 gaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggc--tata 114  Q
    ||||||||||||||||||| ||   |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||  ||||    
T  20759108 gaataataaagtcattgtgaaa---aagaaccaaattaattttgg-ttcaaagttttattttcgtaggtcatgatatgtatgtcttgttttggctatata 20759203  T
Q  115 tctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacattt 184  Q
    | ||||| ||||||||||||  |||||| |||||| ||||  ||||||| |||| |||||||||||||||    
T  20759204 tatggagttctggatgtccgagtgaggtaatcttttactctatggaaagtttacaaaattctctacattt 20759273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 17 - 187
Target Start/End: Original strand, 40553905 - 40554074
Alignment:
Q  17 gaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctatatc 116  Q
    |||||||||| ||||| ||||||||||||| |||||| ||||| |||||||| | ||||||||||||||||| || | |||||||||| ||    |||||    
T  40553905 gaataataaattcattatggaataaaagaatcaaatt-atttttggttcaaattgttattttcgtaggtcattatgtatctgtcttgtattcatcatatc 40554003  T
Q  117 tggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattc-tctacatttcat 187  Q
    | ||||||||||  |||| |||||||||||||| |  ||||||||||  ||| |||||| ||||||||||||    
T  40554004 tagagctctggaactccgattgaggtgatctttgaagcgttggaaagggtac-aaattcatctacatttcat 40554074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 17 - 104
Target Start/End: Original strand, 31390151 - 31390237
Alignment:
Q  17 gaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgt 104  Q
    |||||||||| ||||| ||||||||||||| |||||| ||||| |||||||| | ||||||||||||||||| || | ||||||||||    
T  31390151 gaataataaattcattatggaataaaagaatcaaatt-atttttggttcaaattgttattttcgtaggtcattatgtatctgtcttgt 31390237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 17 - 104
Target Start/End: Complemental strand, 40554736 - 40554650
Alignment:
Q  17 gaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgt 104  Q
    |||||||||| ||||| ||||||||||||| |||||| ||||| |||||||| | ||||||||||||||||| || | ||||||||||    
T  40554736 gaataataaattcattatggaataaaagaatcaaatt-atttttggttcaaattgttattttcgtaggtcattatgtatctgtcttgt 40554650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 17 - 219
Target Start/End: Complemental strand, 9647617 - 9647415
Alignment:
Q  17 gaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctatatc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9647617 gaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctatatc 9647518  T
Q  117 tggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagatcaaattcggaata 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  9647517 tggagctctggatgtccgtttgaggtgatctttaactcgttggaaaacttacgaaattctctacatttcatctgtttgactcaagtgcaaattcggaata 9647418  T
Q  217 ttt 219  Q
    |||    
T  9647417 ttt 9647415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 17 - 219
Target Start/End: Original strand, 23446664 - 23446866
Alignment:
Q  17 gaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctatatc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23446664 gaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctatatc 23446763  T
Q  117 tggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagatcaaattcggaata 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||    
T  23446764 tggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttaccaaattctctacatttcatctgtttgagtcaagagcaaattcggaata 23446863  T
Q  217 ttt 219  Q
    |||    
T  23446864 ttt 23446866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 17 - 219
Target Start/End: Complemental strand, 40998901 - 40998699
Alignment:
Q  17 gaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctatatc 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||    
T  40998901 gaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaaattttattttcgtaggtcatgatatgtctgtcttattttggctatatc 40998802  T
Q  117 tggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagatcaaattcggaata 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||  ||||    
T  40998801 tggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacaaaattctctacatttcatctgtttgattcaagagcaaattcttaata 40998702  T
Q  217 ttt 219  Q
    |||    
T  40998701 ttt 40998699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 17 - 219
Target Start/End: Original strand, 7842678 - 7842880
Alignment:
Q  17 gaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctatatc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||    
T  7842678 gaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcaagatatgtctgttttgttttggttatatc 7842777  T
Q  117 tggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagatcaaattcggaata 216  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||  |||||||||||||    
T  7842778 tagagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctatacaattcatccgtttgactcaagtgcaaattcggaata 7842877  T
Q  217 ttt 219  Q
    |||    
T  7842878 ttt 7842880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 18 - 219
Target Start/End: Complemental strand, 9596117 - 9595916
Alignment:
Q  18 aataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctatatct 117  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||    
T  9596117 aataataaagttattgtggaataaaagaaccaaattaactttgggttcaaagttttattttcgtagatcatgatatgtctgtcttgttttggctatgtct 9596018  T
Q  118 ggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagatcaaattcggaatat 217  Q
    |||||||  ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  9596017 ggagctcccgatgttcgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagtgcaaattcggaatat 9595918  T
Q  218 tt 219  Q
    ||    
T  9595917 tt 9595916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 17 - 219
Target Start/End: Complemental strand, 41000761 - 41000558
Alignment:
Q  17 gaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttatttt-cgtaggtcatgatatgtctgtcttgttttggctatat 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||    
T  41000761 gaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaaattttatttttcgtaggtcatgatatgtcggtcttgttttggctatat 41000662  T
Q  116 ctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagatcaaattcggaat 215  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||||| |||||||  |||    
T  41000661 ctggagctctggatgtccgtttgaggtgatctctaactcgttggaaagcttgcgaaattctctacatttcatctgtttgattcaagagcaaattcttaat 41000562  T
Q  216 attt 219  Q
    ||||    
T  41000561 attt 41000558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 18 - 219
Target Start/End: Complemental strand, 9647080 - 9646879
Alignment:
Q  18 aataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctatatct 117  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||    
T  9647080 aataataaagttattgtggaataaaagaaccaaattaactttgggttcaaagttttattttcgtagatcatgatatgtctgtcttgttttggctatgtct 9646981  T
Q  118 ggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagatcaaattcggaatat 217  Q
    ||||||   ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  9646980 ggagcttccgatgttcgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagtgcaaattcggaatat 9646881  T
Q  218 tt 219  Q
    ||    
T  9646880 tt 9646879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 24790124 - 24790165
Alignment:
Q  17 gaataataaagtcattgtggaataaaagaaccaaattaattt 58  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  24790124 gaataataaagtcattgtggaataaaagaaccaaattaattt 24790165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 24790197 - 24790156
Alignment:
Q  17 gaataataaagtcattgtggaataaaagaaccaaattaattt 58  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  24790197 gaataataaagtcattgtggaataaaagaaccaaattaattt 24790156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 17 - 219
Target Start/End: Complemental strand, 5554473 - 5554271
Alignment:
Q  17 gaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctatatc 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  5554473 gaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaaattttattttcgtaggtcatgatatgtctgtcttgttttggctatatc 5554374  T
Q  117 tggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagatcaaattcggaata 216  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||||    
T  5554373 tggagctctggatgtccgtttgaggtgatctttaactcgttggatagcttacgaaattctctacatttcatctgtttgattcaagagcaaattcggaata 5554274  T
Q  217 ttt 219  Q
    |||    
T  5554273 ttt 5554271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 17 - 219
Target Start/End: Original strand, 16346636 - 16346838
Alignment:
Q  17 gaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctatatc 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  16346636 gaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagtcttattttcgtaggtcatgatatgtctgtcttgttttggctatatc 16346735  T
Q  117 tggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagatcaaattcggaata 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||    
T  16346736 tggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgagtcaagagcaaattcagaata 16346835  T
Q  217 ttt 219  Q
    |||    
T  16346836 ttt 16346838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 17 - 219
Target Start/End: Complemental strand, 16022834 - 16022632
Alignment:
Q  17 gaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctatatc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16022834 gaataataaagtcattgtggaataaaagaaccaaattaattttgggtccaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctatatc 16022735  T
Q  117 tggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagatcaaattcggaata 216  Q
    || |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  16022734 tgaagctctggatgtccgtttgaggtggtctttaactcgttggaaagcttacgaagttctctacatttcgtctgtttgactcaagatcaaattcggaata 16022635  T
Q  217 ttt 219  Q
    |||    
T  16022634 ttt 16022632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 17 - 219
Target Start/End: Original strand, 23460204 - 23460406
Alignment:
Q  17 gaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctatatc 116  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  23460204 gaataataaagtcattgtagaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcattatatgtctgtcttgttttggctatatc 23460303  T
Q  117 tggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagatcaaattcggaata 216  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||    
T  23460304 tggagctctggatatccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgattcaagagcaaattcggaata 23460403  T
Q  217 ttt 219  Q
    |||    
T  23460404 ttt 23460406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 17 - 219
Target Start/End: Complemental strand, 47418658 - 47418456
Alignment:
Q  17 gaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctatatc 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  47418658 gaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagtcttattttcgtaggtcatgatatgtctgtcttgttttggctatatc 47418559  T
Q  117 tggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagatcaaattcggaata 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||| |||||    
T  47418558 tggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacaaaattctctacatttcatctgtttgagtcaagagcaaattcagaata 47418459  T
Q  217 ttt 219  Q
    |||    
T  47418458 ttt 47418456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 17 - 219
Target Start/End: Original strand, 5553200 - 5553402
Alignment:
Q  17 gaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctatatc 116  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||    
T  5553200 gaataataaagtcattgtgaaataaaagaaccaaattaattttgggttcaaaattttattttcgtaggtcatgatatgtctatcttgttttggctatatc 5553299  T
Q  117 tggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagatcaaattcggaata 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||| ||||    
T  5553300 tggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttaattcaagagcaaattcgaaata 5553399  T
Q  217 ttt 219  Q
    |||    
T  5553400 ttt 5553402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 17 - 219
Target Start/End: Original strand, 25531638 - 25531840
Alignment:
Q  17 gaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctatatc 116  Q
    |||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  25531638 gaataataaattcattgtagaaaaaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttgactatatc 25531737  T
Q  117 tggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagatcaaattcggaata 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||| ||||||| |||||    
T  25531738 tggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttatggaattctctacatttcatctgtttgacttaagagcaaattcagaata 25531837  T
Q  217 ttt 219  Q
    |||    
T  25531838 ttt 25531840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 17 - 198
Target Start/End: Original strand, 47566478 - 47566660
Alignment:
Q  17 gaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatat--gtctgtcttgttttggctata 114  Q
    ||||||||||||||||||||||||||||||   | |||||||||  || ||| |||||||||||||| |||||||||  || |||||||| |||||||||    
T  47566478 gaataataaagtcattgtggaataaaagaattgatttaattttgatttaaaa-ttttattttcgtagatcatgatatatgtttgtcttgtcttggctata 47566576  T
Q  115 tctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactc 198  Q
    ||||||||| ||||||| || |||||||||||||||| |||||||||||||||| ||||||| |||||||| ||||||||||||    
T  47566577 tctggagctatggatgttcgattgaggtgatctttaattcgttggaaagcttacaaaattctttacatttcgtctgtttgactc 47566660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 50 - 210
Target Start/End: Original strand, 32570515 - 32570674
Alignment:
Q  50 aattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctatatctggagctctggatgtccgtttgaggtgatcttt 149  Q
    |||||||||||| ||| || | |||||||||||| |||| |||||||| | |||||||  |||||||||||| |||||||||    ||||||||||||||    
T  32570515 aattaattttgg-ttctaaatgttattttcgtagatcattatatgtctattttgtttttactatatctggagttctggatgttatattgaggtgatcttt 32570613  T
Q  150 aactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagatcaaattc 210  Q
    || |||||||||||||||| ||||| |||||||||  | |||||||||| ||| |||||||    
T  32570614 aattcgttggaaagcttacaaaattatctacattttgtatgtttgactcgagagcaaattc 32570674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 191
Target Start/End: Original strand, 2683487 - 2683660
Alignment:
Q  17 gaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctatatc 116  Q
    |||||||||| ||||| |||||||||| || ||||||||||||  ||||||||| ||||||| |||| |||| | ||||||||||| ||||  |||||||    
T  2683487 gaataataaaatcattttggaataaaaaaatcaaattaatttt-tgttcaaagtgttatttttgtagatcataacatgtctgtcttattttatctatatc 2683585  T
Q  117 tggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgt 191  Q
    | |  || || ||||||| || |  |||||||||| |||||| || | |||| ||||| |||| ||||| |||||    
T  2683586 taggactttgaatgtccgattcaaatgatctttaattcgttgaaatgattacaaaattatctatatttcgtctgt 2683660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 63 - 109
Target Start/End: Complemental strand, 25532867 - 25532821
Alignment:
Q  63 ttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttgg 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  25532867 ttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttgg 25532821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 17 - 219
Target Start/End: Complemental strand, 18535984 - 18535782
Alignment:
Q  17 gaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctatatc 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  18535984 gaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagtcttattttcgtaggtcatgatatgtctgtcttgttttggctatatc 18535885  T
Q  117 tggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagatcaaattcggaata 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||    
T  18535884 tggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacaaaattctctacatttcatctgtttgagtcaagagcaaattcggaata 18535785  T
Q  217 ttt 219  Q
    |||    
T  18535784 ttt 18535782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 17 - 219
Target Start/End: Complemental strand, 22300578 - 22300376
Alignment:
Q  17 gaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctatatc 116  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  22300578 gaataataaattcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgtttttgctatatc 22300479  T
Q  117 tggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagatcaaattcggaata 216  Q
     |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||    
T  22300478 cggagctctggatgtccgtttgaggtgatctttaacttgttggaaagcttacggaattctctacatttcatctgtttgactcaagagcaaattcggaata 22300379  T
Q  217 ttt 219  Q
    |||    
T  22300378 ttt 22300376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 24 - 219
Target Start/End: Complemental strand, 24806959 - 24806764
Alignment:
Q  24 aaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctatatctggagct 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  24806959 aaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttatttttgtaggtcatgatatgtctgtcttgttttggctatatctggagct 24806860  T
Q  124 ctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagatcaaattcggaatattt 219  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||||||    
T  24806859 ccggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgatccaagagcaaattcggaatattt 24806764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 17 - 219
Target Start/End: Complemental strand, 24808823 - 24808620
Alignment:
Q  17 gaataata-aagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctatat 115  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  24808823 gaataatagaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttatttttgtaggtcatgatatgtctgtcttgttttggctatat 24808724  T
Q  116 ctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagatcaaattcggaat 215  Q
    ||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||    
T  24808723 ctggagctccggatgtccgtttcaggtgatctttaactcattggaaagcttacgaaattctctacatttcatctgtttgatccaagagcaaattcggaat 24808624  T
Q  216 attt 219  Q
    ||||    
T  24808623 attt 24808620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 17 - 158
Target Start/End: Complemental strand, 31974175 - 31974034
Alignment:
Q  17 gaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctatatc 116  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  31974175 gaataataaagtcattatggaataaaagaacctaattaattttgggttcaaagttttattttcgtaggtcatgatatgtttgtcttgttttggctatatc 31974076  T
Q  117 tggagctctggatgtccgtttgaggtgatctttaactcgttg 158  Q
     |||| ||||||||||||||||||||||||||||||||||||    
T  31974075 gggagttctggatgtccgtttgaggtgatctttaactcgttg 31974034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 22299692 - 22299814
Alignment:
Q  17 gaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctatatc 116  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  22299692 gaataataaattcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttgcctatatc 22299791  T
Q  117 tggagctctggatgtccgtttga 139  Q
    ||||||| |||||||||| ||||    
T  22299792 tggagctttggatgtccgcttga 22299814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 199
Target Start/End: Complemental strand, 44793490 - 44793309
Alignment:
Q  17 gaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctatatc 116  Q
    |||||||||| ||||| ||||||||||||| |||||| ||||| |||||||| | ||||||||||||||||| || | |||||||||| ||    |||||    
T  44793490 gaataataaattcattatggaataaaagaatcaaatt-atttttggttcaaattgttattttcgtaggtcattatgtatctgtcttgtattcatcatatc 44793392  T
Q  117 tggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattc-tctacatttcatctgtttgactca 199  Q
    | ||||||||||  |||| |||||||||||||| |  ||||||||||  ||| |||||| |||||||||||| |||| ||||||    
T  44793391 tagagctctggaactccgattgaggtgatctttgaagcgttggaaagggtac-aaattcatctacatttcatatgttggactca 44793309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 24806099 - 24806151
Alignment:
Q  24 aaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttatt 76  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  24806099 aaagtcattgtggaataaaagaaccaatttaattttgggttcaatgttttatt 24806151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 17 - 104
Target Start/End: Original strand, 44792617 - 44792703
Alignment:
Q  17 gaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgt 104  Q
    |||||||||| ||||| ||||||||||||| |||||| ||||| |||||||| | ||||||| ||||||||| || | ||||||||||    
T  44792617 gaataataaattcattatggaataaaagaatcaaatt-atttttggttcaaattgttatttttgtaggtcattatgtatctgtcttgt 44792703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 139
Target Start/End: Original strand, 31973965 - 31973994
Alignment:
Q  110 ctatatctggagctctggatgtccgtttga 139  Q
    ||||||||||||||||||||||||||||||    
T  31973965 ctatatctggagctctggatgtccgtttga 31973994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 24 - 219
Target Start/End: Original strand, 54866 - 55061
Alignment:
Q  24 aaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctatatctggagct 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  54866 aaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgctatgtctgtcttgttttcgctatatctggagct 54965  T
Q  124 ctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagatcaaattcggaatattt 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||    
T  54966 ctggatgtccgtttgaggtgatctttaactcgttggaaagcttacaaaattctctacatttcatctgtttgattcaagagcaaattcggaatattt 55061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 175; Significance: 2e-94; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 17 - 219
Target Start/End: Original strand, 8366109 - 8366311
Alignment:
Q  17 gaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctatatc 116  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  8366109 gaataataaattcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctatatt 8366208  T
Q  117 tggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagatcaaattcggaata 216  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||| |||||||||||| |||||||||||||    
T  8366209 tggagctctggatgtccgtttgaggtgatctttaactcgtttgaaagcttacggaattctctacattttatctatttgactcaagagcaaattcggaata 8366308  T
Q  217 ttt 219  Q
    |||    
T  8366309 ttt 8366311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 17 - 219
Target Start/End: Complemental strand, 17278356 - 17278155
Alignment:
Q  17 gaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctatatc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||    
T  17278356 gaataataaagtcattgtggaataaaagaaccaaattaattttgggtccaaagttt-attttcgtaagtcatgatatgtctgtcttgttttggctatatc 17278258  T
Q  117 tggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagatcaaattcggaata 216  Q
    ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||| | |||||||||||||    
T  17278257 tggagctctagatgtccgtttgaggtgatctttaactcattggaaagcttacgaaattttctacatttcgtctgtttgactcaaaagcaaattcggaata 17278158  T
Q  217 ttt 219  Q
    |||    
T  17278157 ttt 17278155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 17 - 199
Target Start/End: Original strand, 17277411 - 17277593
Alignment:
Q  17 gaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctatatc 116  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  17277411 gaataataaagtcattgtggaataaaagaatcaaattaattttgggttcaaagttttatttttgtaggtcatgatatgtatgtcttgttttggctatatc 17277510  T
Q  117 tggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactca 199  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||    
T  17277511 tggagctctggatgtccgtttgaggtgatctttaactcattggaaagcttacggaattctctacatttcgtctgtttgactca 17277593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 17 - 167
Target Start/End: Complemental strand, 6778336 - 6778187
Alignment:
Q  17 gaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctatatc 116  Q
    |||||||||||| ||||||||||||||||||| |||||||||||| ||| ||||||||||| |  | ||||||||||||||||||||||||||||||||     
T  6778336 gaataataaagttattgtggaataaaagaaccgaattaattttgg-ttctaagttttatttacacatgtcatgatatgtctgtcttgttttggctatatt 6778238  T
Q  117 tggagctctggatgtccgtttgaggtgatctttaactcgttggaaagctta 167  Q
    |||||||||| || | ||  ||||||| ||||| | || || |||||||||    
T  6778237 tggagctctgaatattcgagtgaggtgttctttgagtctttagaaagctta 6778187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 199
Target Start/End: Original strand, 17857165 - 17857346
Alignment:
Q  17 gaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctatatc 116  Q
    |||||||||| ||||| ||||||||||||| |||||| ||||| |||||||| | ||||||||||||||||| || | |||||||||| ||    |||||    
T  17857165 gaataataaattcattatggaataaaagaatcaaatt-atttttggttcaaattgttattttcgtaggtcattatgtatctgtcttgtattcatcatatc 17857263  T
Q  117 tggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattc-tctacatttcatctgtttgactca 199  Q
    | ||||||||||  |||| |||||||||||||| |  ||||||||||  ||| |||||| |||||||||||| |||| ||||||    
T  17857264 tagagctctggaactccgattgaggtgatctttgaagcgttggaaagggtac-aaattcatctacatttcatatgttggactca 17857346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 23016442 - 23016372
Alignment:
Q  17 gaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcat 88  Q
    ||||| |||||||||| ||||||||||||| |||||| ||||| |||||||| | |||||||||||||||||    
T  23016442 gaatattaaagtcattatggaataaaagaatcaaatt-atttttggttcaaattgttattttcgtaggtcat 23016372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 17277679 - 17277720
Alignment:
Q  17 gaataataaagtcattgtggaataaaagaaccaaattaattt 58  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  17277679 gaataataaagtcattatggaataaaagaaccaaattaattt 17277720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 104
Target Start/End: Complemental strand, 23016776 - 23016690
Alignment:
Q  17 gaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgt 104  Q
    ||||| ||||||| || |||||||||| || ||||||| |||||| |||||| | ||||||||||||||||| || | ||||||||||    
T  23016776 gaatattaaagtcgttatggaataaaaaaatcaaattatttttgg-ttcaaattgttattttcgtaggtcattatgtatctgtcttgt 23016690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 17 - 219
Target Start/End: Complemental strand, 767 - 564
Alignment:
Q  17 gaataata-aagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctatat 115  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  767 gaataatagaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttatttttgtaggtcatgatatgtctgtcttgttttggctatat 668  T
Q  116 ctggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagatcaaattcggaat 215  Q
    ||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||    
T  667 ctggagctccggatgtccgtttcaggtgatctttaactcattggaaagcttacgaaattctctacatttcatctgtttgatccaagagcaaattcggaat 568  T
Q  216 attt 219  Q
    ||||    
T  567 attt 564  T

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Target: scaffold0013 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 17 - 219
Target Start/End: Original strand, 241048 - 241250
Alignment:
Q  17 gaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctatatc 116  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  241048 gaataataaagtcattgcagaataaaagaaccaaattaattttgggtttaaagttttattttcgtaggtcataatatgtctgtcttgttttggctatatc 241147  T
Q  117 tggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagatcaaattcggaata 216  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||| || |||||||||||||    
T  241148 tgaagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaagttctctacatttcgtctttttgactcaggagcaaattcggaata 241247  T
Q  217 ttt 219  Q
    |||    
T  241248 ttt 241250  T

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Target: scaffold0146 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 17 - 186
Target Start/End: Original strand, 31593 - 31762
Alignment:
Q  17 gaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctatatc 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  31593 gaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagtcttattttcgtaggtcatgatatgtctgtcttgttttggctatatc 31692  T
Q  117 tggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttca 186  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  31693 tggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacaaaattctctacatttca 31762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 146; Significance: 5e-77; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 17 - 219
Target Start/End: Original strand, 86585 - 86783
Alignment:
Q  17 gaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctatatc 116  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||| |||    ||||||||||||||     
T  86585 gaataataaagtcattgtggaataaaggaaccaaattaattttgggttcaatgttttatttttgtaggtcatgatatctct----tgttttggctatata 86680  T
Q  117 tggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagatcaaattcggaata 216  Q
    ||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||    
T  86681 tggagctcctgatgtccgtttgaggtgatctttaactcgtttgaaagcttacgaaattctctaaatttcatctgtttgactcaagagcaaattcggaata 86780  T

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Target: scaffold0026; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 744 - 643
Alignment:
Q  17 gaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctatatc 116  Q
    ||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  744 gaataataaagtcattgagaaataaaagaatcaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctatcttgttttggctatatc 645  T
Q  117 tg 118  Q
    ||    
T  644 tg 643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 17 - 126
Target Start/End: Original strand, 22401 - 22510
Alignment:
Q  17 gaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctatatc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22401 gaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctatatc 22500  T
Q  117 tggagctctg 126  Q
    ||||||||||    
T  22501 tggagctctg 22510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 106; Significance: 3e-53; HSPs: 2)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 17 - 134
Target Start/End: Original strand, 17659 - 17776
Alignment:
Q  17 gaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctatatc 116  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  17659 gaataataaagtcagtgttgaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtatgtcttgttttggctatatc 17758  T
Q  117 tggagctctggatgtccg 134  Q
    ||||||||||||||||||    
T  17759 tggagctctggatgtccg 17776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 17 - 134
Target Start/End: Original strand, 27190 - 27307
Alignment:
Q  17 gaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctatatc 116  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  27190 gaataataaagtcagtgttgaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtatgtcttgttttggctatatc 27289  T
Q  117 tggagctctggatgtccg 134  Q
    ||||||||||||||||||    
T  27290 tggagctctggatgtccg 27307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0269 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: scaffold0269
Description:

Target: scaffold0269; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 17 - 106
Target Start/End: Complemental strand, 2049 - 1962
Alignment:
Q  17 gaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttt 106  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  2049 gaataataatgtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgata--tctgtcttgttt 1962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0269; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 148 - 219
Target Start/End: Complemental strand, 1954 - 1883
Alignment:
Q  148 ttaactcgttggaaagcttacgaaattctctacatttcatctgtttgactcaagatcaaattcggaatattt 219  Q
    |||||||||||||||||||| | ||||||||||||||||||||| |||||||||| ||||||||||||||||    
T  1954 ttaactcgttggaaagcttatggaattctctacatttcatctgtctgactcaagagcaaattcggaatattt 1883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 17 - 192
Target Start/End: Complemental strand, 13580 - 13406
Alignment:
Q  17 gaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctatatc 116  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||| || | ||||| |||| ||    |||||    
T  13580 gaataataaagtcattatggaataaaagaaccaaatt-attttgggttcaaatttttattttcgtaggtcattatgtatctgttttgtattcatcatatc 13482  T
Q  117 tggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattc-tctacatttcatctgtt 192  Q
    | |||||||  |  |||| |||||||||||||| |  ||||||||||  ||| |||||| |||||||||||| ||||    
T  13481 tagagctctacaactccgattgaggtgatctttgaagcgttggaaagggtac-aaattcatctacatttcatatgtt 13406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 17 - 199
Target Start/End: Original strand, 5222 - 5403
Alignment:
Q  17 gaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctatatc 116  Q
    |||||||||| ||||| ||||||||||||| |||||| ||||| |||||||| | ||||||||||||||||| || | | |||||||| ||    |||||    
T  5222 gaataataaattcattatggaataaaagaatcaaatt-atttttggttcaaattgttattttcgtaggtcattatgtatgtgtcttgtattcatcatatc 5320  T
Q  117 tggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattc-tctacatttcatctgtttgactca 199  Q
    | || |||||||  |||| |||||||||||||| |  ||||||||||  ||| |||||| |||||||||||| |||| ||||||    
T  5321 tagaactctggaactccgattgaggtgatctttgaagcgttggaaagggtac-aaattcatctacatttcatatgttggactca 5403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 17 - 199
Target Start/End: Complemental strand, 11479 - 11299
Alignment:
Q  17 gaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctatatc 116  Q
    ||||| |||||||||| ||||||||||||| ||||||| |||||| |||||| | ||||||||||||||||| || | |||||||||| ||    |||||    
T  11479 gaatattaaagtcatt-tggaataaaagaatcaaattatttttgg-ttcaaattgttattttcgtaggtcattatgtatctgtcttgtattcatcatatc 11382  T
Q  117 tggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattc-tctacatttcatctgtttgactca 199  Q
    | |||||||| |  |||| |||||||||||||| |  ||||||||||  ||| |||||| |||||||||||| |||| ||||||    
T  11381 tagagctctgcaactccgattgaggtgatctttgaagcgttggaaagggtac-aaattcatctacatttcatatgttggactca 11299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0139 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 17 - 199
Target Start/End: Original strand, 4227 - 4408
Alignment:
Q  17 gaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctatatc 116  Q
    |||||||||||||||| ||||||||||||| |||||| ||||| |||||||| | ||||||||||||||||| || | ||||| |||| ||    ||||     
T  4227 gaataataaagtcattatggaataaaagaatcaaatt-atttttggttcaaattgttattttcgtaggtcattatgtatctgtattgtattcatcatatt 4325  T
Q  117 tggagctctggatgtccgtttgaggtgatctttaactcgttggaaagcttacgaaattc-tctacatttcatctgtttgactca 199  Q
    | |||||||  |  |||| ||||||||||||||||  |||| |||||  ||| |||||| |||||||||||| |||||||||||    
T  4326 tagagctctacaactccgattgaggtgatctttaaagcgttcgaaagggtac-aaattcatctacatttcatatgtttgactca 4408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 163
Target Start/End: Complemental strand, 375390 - 375245
Alignment:
Q  17 gaataataaagtcattgtggaataaaagaaccaaattaattttgggttcaaagttttattttcgtaggtcatgatatgtctgtcttgttttggctatatc 116  Q
    |||||||||| ||||| ||||||||||||| |||||| ||||| |||||||| | ||||||| ||||||||| || | |||||||||| ||    |||||    
T  375390 gaataataaattcattatggaataaaagaatcaaatt-atttttggttcaaattgttatttttgtaggtcattatgtatctgtcttgtattcctcatatc 375292  T
Q  117 tggagctctggatgtccgtttgaggtgatctttaactcgttggaaag 163  Q
    | ||||||||||  || | |||||||||||||| |  ||||||||||    
T  375291 tagagctctggaactctgattgaggtgatctttgaagcgttggaaag 375245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 12037101 - 12037064
Alignment:
Q  17 gaataataaagtcattgtggaataaaagaaccaaatta 54  Q
    ||||||||||||||||||||||||||||||||||||||    
T  12037101 gaataataaagtcattgtggaataaaagaaccaaatta 12037064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 12037018 - 12037053
Alignment:
Q  17 gaataataaagtcattgtggaataaaagaaccaaat 52  Q
    ||||||||||||||||||||||||||||||||||||    
T  12037018 gaataataaagtcattgtggaataaaagaaccaaat 12037053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0359 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0359
Description:

Target: scaffold0359; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 8944 - 8902
Alignment:
Q  17 gaataataaagtcattgtggaataaaagaaccaaattaatttt 59  Q
    |||||||||||||||||||||||| ||||||||| ||||||||    
T  8944 gaataataaagtcattgtggaatataagaaccaagttaatttt 8902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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