View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2201_low_3 (Length: 594)

Name: NF2201_low_3
Description: NF2201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2201_low_3
NF2201_low_3
[»] chr3 (24 HSPs)
chr3 (362-532)||(42575894-42576064)
chr3 (221-262)||(35272128-35272170)
chr3 (221-262)||(8066456-8066497)
chr3 (221-261)||(14207476-14207517)
chr3 (221-261)||(14215224-14215265)
chr3 (221-256)||(7149-7184)
chr3 (221-263)||(32795937-32795980)
chr3 (221-263)||(39604173-39604216)
chr3 (221-256)||(41717364-41717399)
chr3 (221-262)||(11173551-11173593)
chr3 (221-262)||(19418088-19418130)
chr3 (222-256)||(26021994-26022028)
chr3 (221-262)||(36799499-36799541)
chr3 (226-256)||(37710510-37710540)
chr3 (221-262)||(46473229-46473271)
chr3 (222-255)||(12762879-12762912)
chr3 (222-251)||(29525333-29525362)
chr3 (223-260)||(36925838-36925875)
chr3 (221-262)||(41309101-41309142)
chr3 (222-258)||(17272678-17272714)
chr3 (221-262)||(33007461-33007504)
chr3 (221-260)||(41112002-41112042)
chr3 (267-295)||(42575799-42575827)
chr3 (221-260)||(46092889-46092929)
[»] chr2 (20 HSPs)
chr2 (222-262)||(18949108-18949148)
chr2 (221-262)||(45515528-45515569)
chr2 (221-252)||(6365287-6365318)
chr2 (221-256)||(30856908-30856943)
chr2 (221-262)||(1889248-1889290)
chr2 (221-262)||(3091842-3091884)
chr2 (221-262)||(22390253-22390295)
chr2 (222-252)||(32128232-32128262)
chr2 (221-262)||(34442214-34442256)
chr2 (221-262)||(19695620-19695661)
chr2 (222-262)||(23344917-23344958)
chr2 (222-251)||(25997670-25997699)
chr2 (223-256)||(36763455-36763488)
chr2 (222-251)||(43791731-43791760)
chr2 (221-264)||(10550385-10550429)
chr2 (221-249)||(19523343-19523371)
chr2 (110-146)||(24727635-24727671)
chr2 (222-262)||(33296016-33296056)
chr2 (221-260)||(36376781-36376821)
chr2 (227-262)||(37085149-37085185)
[»] chr1 (18 HSPs)
chr1 (221-256)||(36930691-36930726)
chr1 (221-262)||(5477091-5477133)
chr1 (221-255)||(6841892-6841926)
chr1 (221-253)||(19651509-19651541)
chr1 (221-256)||(4604630-4604665)
chr1 (221-252)||(25995561-25995592)
chr1 (221-252)||(32966368-32966399)
chr1 (221-256)||(42299123-42299158)
chr1 (221-256)||(49621462-49621497)
chr1 (221-256)||(50527992-50528027)
chr1 (221-262)||(40610330-40610372)
chr1 (221-262)||(50659120-50659162)
chr1 (222-252)||(52715101-52715131)
chr1 (221-262)||(31703409-31703450)
chr1 (221-253)||(16987548-16987580)
chr1 (221-253)||(25988924-25988956)
chr1 (221-260)||(28253116-28253156)
chr1 (221-260)||(50061906-50061946)
[»] chr5 (12 HSPs)
chr5 (222-256)||(3770959-3770993)
chr5 (221-252)||(8959261-8959292)
chr5 (221-252)||(11464062-11464093)
chr5 (221-262)||(19376060-19376102)
chr5 (221-262)||(34381113-34381155)
chr5 (221-262)||(39595375-39595417)
chr5 (120-153)||(3723114-3723147)
chr5 (223-256)||(7144678-7144711)
chr5 (221-261)||(42909820-42909861)
chr5 (222-261)||(125194-125234)
chr5 (221-260)||(11666280-11666320)
chr5 (221-260)||(14323898-14323938)
[»] chr4 (23 HSPs)
chr4 (222-256)||(8456005-8456039)
chr4 (221-262)||(49194984-49195026)
chr4 (222-262)||(39449272-39449313)
chr4 (221-260)||(39844188-39844228)
chr4 (221-256)||(3223090-3223125)
chr4 (221-252)||(5234410-5234441)
chr4 (221-256)||(28676089-28676124)
chr4 (221-252)||(32365606-32365637)
chr4 (221-252)||(32901430-32901461)
chr4 (221-262)||(9162167-9162209)
chr4 (222-256)||(25241812-25241846)
chr4 (222-256)||(33438147-33438181)
chr4 (222-256)||(33575009-33575043)
chr4 (221-262)||(36512943-36512985)
chr4 (222-251)||(839410-839439)
chr4 (221-262)||(16004255-16004296)
chr4 (222-262)||(24772773-24772814)
chr4 (225-258)||(34259931-34259964)
chr4 (221-262)||(48099911-48099952)
chr4 (221-262)||(53384270-53384311)
chr4 (221-249)||(33776995-33777023)
chr4 (221-249)||(45678364-45678392)
chr4 (221-261)||(46794432-46794471)
[»] chr8 (16 HSPs)
chr8 (221-262)||(7596820-7596861)
chr8 (221-262)||(41293650-41293691)
chr8 (221-252)||(5359439-5359470)
chr8 (221-252)||(33817258-33817289)
chr8 (221-262)||(426202-426244)
chr8 (221-262)||(22767231-22767273)
chr8 (221-262)||(23258133-23258175)
chr8 (221-262)||(28927782-28927824)
chr8 (222-252)||(36015659-36015689)
chr8 (222-251)||(154392-154421)
chr8 (222-262)||(24503019-24503060)
chr8 (221-262)||(30925583-30925624)
chr8 (222-251)||(42026474-42026503)
chr8 (222-262)||(44068773-44068814)
chr8 (223-255)||(6849197-6849229)
chr8 (221-262)||(34474050-34474093)
[»] chr6 (7 HSPs)
chr6 (221-262)||(22491958-22491999)
chr6 (221-263)||(1688300-1688343)
chr6 (221-252)||(3660292-3660323)
chr6 (222-252)||(3339438-3339468)
chr6 (221-262)||(29383658-29383700)
chr6 (222-255)||(2340500-2340533)
chr6 (120-153)||(30622024-30622057)
[»] scaffold0086 (1 HSPs)
scaffold0086 (221-256)||(17265-17300)
[»] chr7 (11 HSPs)
chr7 (221-252)||(10014894-10014925)
chr7 (221-256)||(29034186-29034221)
chr7 (221-252)||(37351929-37351960)
chr7 (221-262)||(2790278-2790320)
chr7 (221-262)||(5978680-5978722)
chr7 (221-262)||(33223457-33223499)
chr7 (221-262)||(46651773-46651815)
chr7 (221-262)||(7390703-7390744)
chr7 (223-256)||(12232938-12232971)
chr7 (221-254)||(49014336-49014369)
chr7 (221-264)||(10161856-10161900)
[»] scaffold0011 (1 HSPs)
scaffold0011 (221-262)||(219592-219634)
[»] scaffold0003 (1 HSPs)
scaffold0003 (221-255)||(337219-337253)
[»] scaffold0115 (1 HSPs)
scaffold0115 (221-262)||(15117-15158)
[»] scaffold0036 (1 HSPs)
scaffold0036 (221-262)||(18105-18146)


Alignment Details
Target: chr3 (Bit Score: 171; Significance: 2e-91; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 362 - 532
Target Start/End: Original strand, 42575894 - 42576064
Alignment:
Q  362 atctaacacagacaaaaaaccacccaaggaactagagacactccaacgaaaagctgcaactccaccctgcaataaagaaagaaaagtagaacccatagga 461  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42575894 atctaacacagacaaaaaaccacccaaggaactagagacactccaacgaaaagctgcaactccaccctgcaataaagaaagaaaagtagaacccatagga 42575993  T
Q  462 tgggcaagatggacaaccgccccacaccccccaccgaatagcaacagaactcacaccaccacaagacttta 532  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42575994 tgggcaagatggacaaccgccccacaccccccaccgaatagcaacagaactcacaccaccacaagacttta 42576064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 221 - 262
Target Start/End: Original strand, 35272128 - 35272170
Alignment:
Q  221 cattgtttttgaccaataaaaagagag-aaaaagaagttgtca 262  Q
    ||||||||||||||||||||||||||| |||||||||||||||    
T  35272128 cattgtttttgaccaataaaaagagagaaaaaagaagttgtca 35272170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 221 - 262
Target Start/End: Original strand, 8066456 - 8066497
Alignment:
Q  221 cattgtttttgaccaataaaaagagagaaaaagaagttgtca 262  Q
    ||||||||||||||||| |||||||||||||| |||||||||    
T  8066456 cattgtttttgaccaatgaaaagagagaaaaataagttgtca 8066497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 221 - 261
Target Start/End: Original strand, 14207476 - 14207517
Alignment:
Q  221 cattgtttttgaccaataaaaagagag-aaaaagaagttgtc 261  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  14207476 cattgtttttgaccaataaaaagagagaaaaaagaagttgtc 14207517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 221 - 261
Target Start/End: Original strand, 14215224 - 14215265
Alignment:
Q  221 cattgtttttgaccaataaaaagagag-aaaaagaagttgtc 261  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  14215224 cattgtttttgaccaataaaaagagagaaaaaagaagttgtc 14215265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 256
Target Start/End: Complemental strand, 7184 - 7149
Alignment:
Q  221 cattgtttttgaccaataaaaagagagaaaaagaag 256  Q
    |||||||||||||||||||||| |||||||||||||    
T  7184 cattgtttttgaccaataaaaaaagagaaaaagaag 7149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 263
Target Start/End: Original strand, 32795937 - 32795980
Alignment:
Q  221 cattgtttttgaccaataaaaagagagaaaaag-aagttgtcaa 263  Q
    ||||||||||||||||||||||||||||||| | ||||||||||    
T  32795937 cattgtttttgaccaataaaaagagagaaaatgaaagttgtcaa 32795980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 263
Target Start/End: Complemental strand, 39604216 - 39604173
Alignment:
Q  221 cattgtttttgaccaataaaaagagaga-aaaagaagttgtcaa 263  Q
    ||||||||||||||||| |||||||||| |||||||||||||||    
T  39604216 cattgtttttgaccaatgaaaagagagaaaaaagaagttgtcaa 39604173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 256
Target Start/End: Original strand, 41717364 - 41717399
Alignment:
Q  221 cattgtttttgaccaataaaaagagagaaaaagaag 256  Q
    ||||||||||||||||| ||||||||||||||||||    
T  41717364 cattgtttttgaccaatgaaaagagagaaaaagaag 41717399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 221 - 262
Target Start/End: Original strand, 11173551 - 11173593
Alignment:
Q  221 cattgtttttgaccaataaaaagagag-aaaaagaagttgtca 262  Q
    ||||||||||||||||| ||||||||| |||||||||||||||    
T  11173551 cattgtttttgaccaatgaaaagagagaaaaaagaagttgtca 11173593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 221 - 262
Target Start/End: Complemental strand, 19418130 - 19418088
Alignment:
Q  221 cattgtttttgaccaataaaaagagaga-aaaagaagttgtca 262  Q
    ||||||||||||||||| |||||||||| ||||||||||||||    
T  19418130 cattgtttttgaccaatgaaaagagagagaaaagaagttgtca 19418088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 222 - 256
Target Start/End: Complemental strand, 26022028 - 26021994
Alignment:
Q  222 attgtttttgaccaataaaaagagagaaaaagaag 256  Q
    |||||||||||||||||||||||| ||||||||||    
T  26022028 attgtttttgaccaataaaaagagtgaaaaagaag 26021994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 221 - 262
Target Start/End: Original strand, 36799499 - 36799541
Alignment:
Q  221 cattgtttttgaccaataaaaagagagaaaaa-gaagttgtca 262  Q
    ||||||||||||||||| |||||||||||||| ||||||||||    
T  36799499 cattgtttttgaccaatgaaaagagagaaaaatgaagttgtca 36799541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 226 - 256
Target Start/End: Original strand, 37710510 - 37710540
Alignment:
Q  226 tttttgaccaataaaaagagagaaaaagaag 256  Q
    |||||||||||||||||||||||||||||||    
T  37710510 tttttgaccaataaaaagagagaaaaagaag 37710540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 221 - 262
Target Start/End: Original strand, 46473229 - 46473271
Alignment:
Q  221 cattgtttttgaccaataaaaagagag-aaaaagaagttgtca 262  Q
    ||||||||||||||||| ||||||||| |||||||||||||||    
T  46473229 cattgtttttgaccaatgaaaagagagaaaaaagaagttgtca 46473271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 255
Target Start/End: Complemental strand, 12762912 - 12762879
Alignment:
Q  222 attgtttttgaccaataaaaagagagaaaaagaa 255  Q
    ||||||||| ||||||||||||||||||||||||    
T  12762912 attgttttttaccaataaaaagagagaaaaagaa 12762879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 251
Target Start/End: Original strand, 29525333 - 29525362
Alignment:
Q  222 attgtttttgaccaataaaaagagagaaaa 251  Q
    ||||||||||||||||||||||||||||||    
T  29525333 attgtttttgaccaataaaaagagagaaaa 29525362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 260
Target Start/End: Original strand, 36925838 - 36925875
Alignment:
Q  223 ttgtttttgaccaataaaaagagagaaaaagaagttgt 260  Q
    |||||||||||||||||||||| || ||||||||||||    
T  36925838 ttgtttttgaccaataaaaagaaaggaaaagaagttgt 36925875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 262
Target Start/End: Original strand, 41309101 - 41309142
Alignment:
Q  221 cattgtttttgaccaataaaaagagagaaaaagaagttgtca 262  Q
    |||||||||| |||||| |||||| |||||||||||||||||    
T  41309101 cattgtttttaaccaatgaaaagatagaaaaagaagttgtca 41309142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 222 - 258
Target Start/End: Original strand, 17272678 - 17272714
Alignment:
Q  222 attgtttttgaccaataaaaagagagaaaaagaagtt 258  Q
    ||||||||||| ||||||||||||| |||||||||||    
T  17272678 attgtttttgatcaataaaaagagaaaaaaagaagtt 17272714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 221 - 262
Target Start/End: Original strand, 33007461 - 33007504
Alignment:
Q  221 cattgtttttgaccaataaaaagagag--aaaaagaagttgtca 262  Q
    ||||||||||||||||| |||||||||  |||||||||||||||    
T  33007461 cattgtttttgaccaatgaaaagagagaaaaaaagaagttgtca 33007504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 221 - 260
Target Start/End: Complemental strand, 41112042 - 41112002
Alignment:
Q  221 cattgtttttgaccaataaaaagagaga-aaaagaagttgt 260  Q
    ||||||||||||||||| |||||||||| ||||||||||||    
T  41112042 cattgtttttgaccaatgaaaagagagagaaaagaagttgt 41112002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 267 - 295
Target Start/End: Original strand, 42575799 - 42575827
Alignment:
Q  267 ataaacaaaacaggtacaaagtcagaatc 295  Q
    |||||||||||||||||||||||||||||    
T  42575799 ataaacaaaacaggtacaaagtcagaatc 42575827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 221 - 260
Target Start/End: Complemental strand, 46092929 - 46092889
Alignment:
Q  221 cattgtttttgaccaataaaaagaga-gaaaaagaagttgt 260  Q
    |||||||||||||||||||||||||| |||||| |||||||    
T  46092929 cattgtttttgaccaataaaaagagaggaaaaaaaagttgt 46092889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 222 - 262
Target Start/End: Original strand, 18949108 - 18949148
Alignment:
Q  222 attgtttttgaccaataaaaagagagaaaaagaagttgtca 262  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  18949108 attgtttttgaccaataaaaagaaagaaaaagaagttgtca 18949148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 221 - 262
Target Start/End: Complemental strand, 45515569 - 45515528
Alignment:
Q  221 cattgtttttgaccaataaaaagagagaaaaagaagttgtca 262  Q
    |||||||||| |||||| ||||||||||||||||||||||||    
T  45515569 cattgtttttaaccaatgaaaagagagaaaaagaagttgtca 45515528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 252
Target Start/End: Original strand, 6365287 - 6365318
Alignment:
Q  221 cattgtttttgaccaataaaaagagagaaaaa 252  Q
    ||||||||||||||||||||||||||||||||    
T  6365287 cattgtttttgaccaataaaaagagagaaaaa 6365318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 256
Target Start/End: Original strand, 30856908 - 30856943
Alignment:
Q  221 cattgtttttgaccaataaaaagagagaaaaagaag 256  Q
    ||||||||||||||||| ||||||||||||||||||    
T  30856908 cattgtttttgaccaatgaaaagagagaaaaagaag 30856943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 221 - 262
Target Start/End: Original strand, 1889248 - 1889290
Alignment:
Q  221 cattgtttttgaccaataaaaagagag-aaaaagaagttgtca 262  Q
    ||||||||||||||||| ||||||||| |||||||||||||||    
T  1889248 cattgtttttgaccaatgaaaagagagaaaaaagaagttgtca 1889290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 221 - 262
Target Start/End: Original strand, 3091842 - 3091884
Alignment:
Q  221 cattgtttttgaccaataaaaagagag-aaaaagaagttgtca 262  Q
    ||||||||||||||||| ||||||||| |||||||||||||||    
T  3091842 cattgtttttgaccaatgaaaagagagaaaaaagaagttgtca 3091884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 221 - 262
Target Start/End: Original strand, 22390253 - 22390295
Alignment:
Q  221 cattgtttttgaccaataaaaagagaga-aaaagaagttgtca 262  Q
    ||||||||||||||||| |||||||||| ||||||||||||||    
T  22390253 cattgtttttgaccaatgaaaagagagagaaaagaagttgtca 22390295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 222 - 252
Target Start/End: Original strand, 32128232 - 32128262
Alignment:
Q  222 attgtttttgaccaataaaaagagagaaaaa 252  Q
    |||||||||||||||||||||||||||||||    
T  32128232 attgtttttgaccaataaaaagagagaaaaa 32128262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 221 - 262
Target Start/End: Original strand, 34442214 - 34442256
Alignment:
Q  221 cattgtttttgaccaataaaaagagaga-aaaagaagttgtca 262  Q
    |||||||||||||||||||||||||||| |||||| |||||||    
T  34442214 cattgtttttgaccaataaaaagagagagaaaagaggttgtca 34442256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 262
Target Start/End: Complemental strand, 19695661 - 19695620
Alignment:
Q  221 cattgtttttgaccaataaaaagagagaaaaagaagttgtca 262  Q
    ||||||||||||||||| ||||||||| |||| |||||||||    
T  19695661 cattgtttttgaccaatgaaaagagaggaaaaaaagttgtca 19695620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 262
Target Start/End: Complemental strand, 23344958 - 23344917
Alignment:
Q  222 attgtttttgaccaataaaaagagaga-aaaagaagttgtca 262  Q
    |||||||||||||||| |||||||||| ||||||||||||||    
T  23344958 attgtttttgaccaatgaaaagagagagaaaagaagttgtca 23344917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 251
Target Start/End: Complemental strand, 25997699 - 25997670
Alignment:
Q  222 attgtttttgaccaataaaaagagagaaaa 251  Q
    ||||||||||||||||||||||||||||||    
T  25997699 attgtttttgaccaataaaaagagagaaaa 25997670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 256
Target Start/End: Complemental strand, 36763488 - 36763455
Alignment:
Q  223 ttgtttttgaccaataaaaagagagaaaaagaag 256  Q
    ||||||||||||||| ||||||||||||||||||    
T  36763488 ttgtttttgaccaatgaaaagagagaaaaagaag 36763455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 251
Target Start/End: Complemental strand, 43791760 - 43791731
Alignment:
Q  222 attgtttttgaccaataaaaagagagaaaa 251  Q
    ||||||||||||||||||||||||||||||    
T  43791760 attgtttttgaccaataaaaagagagaaaa 43791731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 221 - 264
Target Start/End: Complemental strand, 10550429 - 10550385
Alignment:
Q  221 cattgtttttgaccaataaaaagagagaaaaa-gaagttgtcaac 264  Q
    |||||||||||||||||||||| |||||||||  |||||||||||    
T  10550429 cattgtttttgaccaataaaaatagagaaaaacaaagttgtcaac 10550385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 221 - 249
Target Start/End: Complemental strand, 19523371 - 19523343
Alignment:
Q  221 cattgtttttgaccaataaaaagagagaa 249  Q
    |||||||||||||||||||||||||||||    
T  19523371 cattgtttttgaccaataaaaagagagaa 19523343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 110 - 146
Target Start/End: Complemental strand, 24727671 - 24727635
Alignment:
Q  110 tataaacaacgagaaatgatatttgtacaactacttt 146  Q
    |||| |||||||||||||||||||||||||| |||||    
T  24727671 tatatacaacgagaaatgatatttgtacaaccacttt 24727635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 222 - 262
Target Start/End: Complemental strand, 33296056 - 33296016
Alignment:
Q  222 attgtttttgaccaataaaaagagagaaaaagaagttgtca 262  Q
    ||||||||| |||||| |||||||||||||| |||||||||    
T  33296056 attgtttttaaccaatgaaaagagagaaaaaaaagttgtca 33296016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 221 - 260
Target Start/End: Complemental strand, 36376821 - 36376781
Alignment:
Q  221 cattgtttttgaccaataaaaagagaga-aaaagaagttgt 260  Q
    ||||||||||||||||| |||||||||| ||||||||||||    
T  36376821 cattgtttttgaccaatgaaaagagagaaaaaagaagttgt 36376781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 227 - 262
Target Start/End: Complemental strand, 37085185 - 37085149
Alignment:
Q  227 ttttgaccaataaaaagagaga-aaaagaagttgtca 262  Q
    |||||||||||||||||||||| ||||||||||||||    
T  37085185 ttttgaccaataaaaagagagaaaaaagaagttgtca 37085149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 221 - 256
Target Start/End: Complemental strand, 36930726 - 36930691
Alignment:
Q  221 cattgtttttgaccaataaaaagagagaaaaagaag 256  Q
    ||||||||||||||||||||||||||||||||||||    
T  36930726 cattgtttttgaccaataaaaagagagaaaaagaag 36930691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 221 - 262
Target Start/End: Complemental strand, 5477133 - 5477091
Alignment:
Q  221 cattgtttttgaccaataaaaagagaga-aaaagaagttgtca 262  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  5477133 cattgtttttgaccaataaaaagagagaaaaaagaagttgtca 5477091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 221 - 255
Target Start/End: Original strand, 6841892 - 6841926
Alignment:
Q  221 cattgtttttgaccaataaaaagagagaaaaagaa 255  Q
    |||||||||||||||||||||||||||||||||||    
T  6841892 cattgtttttgaccaataaaaagagagaaaaagaa 6841926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 221 - 253
Target Start/End: Original strand, 19651509 - 19651541
Alignment:
Q  221 cattgtttttgaccaataaaaagagagaaaaag 253  Q
    |||||||||||||||||||||||||||||||||    
T  19651509 cattgtttttgaccaataaaaagagagaaaaag 19651541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 256
Target Start/End: Original strand, 4604630 - 4604665
Alignment:
Q  221 cattgtttttgaccaataaaaagagagaaaaagaag 256  Q
    ||||||||||||||||| ||||||||||||||||||    
T  4604630 cattgtttttgaccaatgaaaagagagaaaaagaag 4604665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 252
Target Start/End: Original strand, 25995561 - 25995592
Alignment:
Q  221 cattgtttttgaccaataaaaagagagaaaaa 252  Q
    ||||||||||||||||||||||||||||||||    
T  25995561 cattgtttttgaccaataaaaagagagaaaaa 25995592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 252
Target Start/End: Original strand, 32966368 - 32966399
Alignment:
Q  221 cattgtttttgaccaataaaaagagagaaaaa 252  Q
    ||||||||||||||||||||||||||||||||    
T  32966368 cattgtttttgaccaataaaaagagagaaaaa 32966399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 256
Target Start/End: Complemental strand, 42299158 - 42299123
Alignment:
Q  221 cattgtttttgaccaataaaaagagagaaaaagaag 256  Q
    |||| |||||||||||||||||||||||||||||||    
T  42299158 cattatttttgaccaataaaaagagagaaaaagaag 42299123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 256
Target Start/End: Original strand, 49621462 - 49621497
Alignment:
Q  221 cattgtttttgaccaataaaaagagagaaaaagaag 256  Q
    ||||||||||||||||||||||||||||||| ||||    
T  49621462 cattgtttttgaccaataaaaagagagaaaatgaag 49621497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 256
Target Start/End: Complemental strand, 50528027 - 50527992
Alignment:
Q  221 cattgtttttgaccaataaaaagagagaaaaagaag 256  Q
    ||||||||||||||||| ||||||||||||||||||    
T  50528027 cattgtttttgaccaatgaaaagagagaaaaagaag 50527992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 221 - 262
Target Start/End: Original strand, 40610330 - 40610372
Alignment:
Q  221 cattgtttttgaccaataaaaagagaga-aaaagaagttgtca 262  Q
    ||||||||||||||||| |||||||||| ||||||||||||||    
T  40610330 cattgtttttgaccaatgaaaagagagagaaaagaagttgtca 40610372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 221 - 262
Target Start/End: Complemental strand, 50659162 - 50659120
Alignment:
Q  221 cattgtttttgaccaataaaaagagaga-aaaagaagttgtca 262  Q
    ||||||||||||||||| |||||||||| ||||||||||||||    
T  50659162 cattgtttttgaccaatgaaaagagagagaaaagaagttgtca 50659120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 222 - 252
Target Start/End: Original strand, 52715101 - 52715131
Alignment:
Q  222 attgtttttgaccaataaaaagagagaaaaa 252  Q
    |||||||||||||||||||||||||||||||    
T  52715101 attgtttttgaccaataaaaagagagaaaaa 52715131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 262
Target Start/End: Complemental strand, 31703450 - 31703409
Alignment:
Q  221 cattgtttttgaccaataaaaagagagaaaaagaagttgtca 262  Q
    |||||||||| |||||| |||||||||||||| |||||||||    
T  31703450 cattgtttttaaccaatgaaaagagagaaaaaaaagttgtca 31703409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 221 - 253
Target Start/End: Original strand, 16987548 - 16987580
Alignment:
Q  221 cattgtttttgaccaataaaaagagagaaaaag 253  Q
    ||||||||||||||||| |||||||||||||||    
T  16987548 cattgtttttgaccaatgaaaagagagaaaaag 16987580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 221 - 253
Target Start/End: Complemental strand, 25988956 - 25988924
Alignment:
Q  221 cattgtttttgaccaataaaaagagagaaaaag 253  Q
    |||||||||||||||||||||| ||||||||||    
T  25988956 cattgtttttgaccaataaaaaaagagaaaaag 25988924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 221 - 260
Target Start/End: Original strand, 28253116 - 28253156
Alignment:
Q  221 cattgtttttgaccaataaaaagagaga-aaaagaagttgt 260  Q
    ||||||||||||||||| |||||||||| ||||||||||||    
T  28253116 cattgtttttgaccaatgaaaagagagagaaaagaagttgt 28253156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 221 - 260
Target Start/End: Complemental strand, 50061946 - 50061906
Alignment:
Q  221 cattgtttttgaccaataaaaagagaga-aaaagaagttgt 260  Q
    |||||||||||| ||||||||||||||| ||||||||||||    
T  50061946 cattgtttttgatcaataaaaagagagagaaaagaagttgt 50061906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 222 - 256
Target Start/End: Complemental strand, 3770993 - 3770959
Alignment:
Q  222 attgtttttgaccaataaaaagagagaaaaagaag 256  Q
    |||||||||||||||||||||||||||||||||||    
T  3770993 attgtttttgaccaataaaaagagagaaaaagaag 3770959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 252
Target Start/End: Original strand, 8959261 - 8959292
Alignment:
Q  221 cattgtttttgaccaataaaaagagagaaaaa 252  Q
    ||||||||||||||||||||||||||||||||    
T  8959261 cattgtttttgaccaataaaaagagagaaaaa 8959292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 252
Target Start/End: Complemental strand, 11464093 - 11464062
Alignment:
Q  221 cattgtttttgaccaataaaaagagagaaaaa 252  Q
    ||||||||||||||||||||||||||||||||    
T  11464093 cattgtttttgaccaataaaaagagagaaaaa 11464062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 221 - 262
Target Start/End: Complemental strand, 19376102 - 19376060
Alignment:
Q  221 cattgtttttgaccaataaaaagagaga-aaaagaagttgtca 262  Q
    ||||||||||||||||| |||||||||| ||||||||||||||    
T  19376102 cattgtttttgaccaatgaaaagagagaaaaaagaagttgtca 19376060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 221 - 262
Target Start/End: Original strand, 34381113 - 34381155
Alignment:
Q  221 cattgtttttgaccaataaaaagagagaaaaa-gaagttgtca 262  Q
    ||||||||||||||||| |||||||||||||| ||||||||||    
T  34381113 cattgtttttgaccaatgaaaagagagaaaaacgaagttgtca 34381155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 221 - 262
Target Start/End: Original strand, 39595375 - 39595417
Alignment:
Q  221 cattgtttttgaccaataaaaagagag-aaaaagaagttgtca 262  Q
    ||||||||||||||||| ||||||||| |||||||||||||||    
T  39595375 cattgtttttgaccaatgaaaagagagaaaaaagaagttgtca 39595417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 153
Target Start/End: Complemental strand, 3723147 - 3723114
Alignment:
Q  120 gagaaatgatatttgtacaactactttcttacaa 153  Q
    ||||||||||||||||||||||||||| ||||||    
T  3723147 gagaaatgatatttgtacaactactttattacaa 3723114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 256
Target Start/End: Original strand, 7144678 - 7144711
Alignment:
Q  223 ttgtttttgaccaataaaaagagagaaaaagaag 256  Q
    ||||| ||||||||||||||||||||||||||||    
T  7144678 ttgttattgaccaataaaaagagagaaaaagaag 7144711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 261
Target Start/End: Original strand, 42909820 - 42909861
Alignment:
Q  221 cattgtttttgaccaataaaaagagaga-aaaagaagttgtc 261  Q
    ||||||||||||||||| |||||||||| |||||||||||||    
T  42909820 cattgtttttgaccaatgaaaagagagagaaaagaagttgtc 42909861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 222 - 261
Target Start/End: Original strand, 125194 - 125234
Alignment:
Q  222 attgtttttgaccaataaaaagagag-aaaaagaagttgtc 261  Q
    |||||||||||||||| ||||||||| ||||||||||||||    
T  125194 attgtttttgaccaatgaaaagagagaaaaaagaagttgtc 125234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 221 - 260
Target Start/End: Original strand, 11666280 - 11666320
Alignment:
Q  221 cattgtttttgaccaataaaaagagag-aaaaagaagttgt 260  Q
    ||||||||||||||||| ||||||||| |||||||||||||    
T  11666280 cattgtttttgaccaatgaaaagagagaaaaaagaagttgt 11666320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 221 - 260
Target Start/End: Complemental strand, 14323938 - 14323898
Alignment:
Q  221 cattgtttttgaccaataaaaagagag-aaaaagaagttgt 260  Q
    ||||||||||||||||||||||| ||| |||||||||||||    
T  14323938 cattgtttttgaccaataaaaagtgagaaaaaagaagttgt 14323898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 222 - 256
Target Start/End: Original strand, 8456005 - 8456039
Alignment:
Q  222 attgtttttgaccaataaaaagagagaaaaagaag 256  Q
    |||||||||||||||||||||||||||||||||||    
T  8456005 attgtttttgaccaataaaaagagagaaaaagaag 8456039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 221 - 262
Target Start/End: Original strand, 49194984 - 49195026
Alignment:
Q  221 cattgtttttgaccaataaaaagagaga-aaaagaagttgtca 262  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  49194984 cattgtttttgaccaataaaaagagagagaaaagaagttgtca 49195026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 222 - 262
Target Start/End: Original strand, 39449272 - 39449313
Alignment:
Q  222 attgtttttgaccaataaaaagagagaaaaaga-agttgtca 262  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  39449272 attgtttttgaccaataaaaagagagaaaaagagagttgtca 39449313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 221 - 260
Target Start/End: Complemental strand, 39844228 - 39844188
Alignment:
Q  221 cattgtttttgaccaataaaaagagaga-aaaagaagttgt 260  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  39844228 cattgtttttgaccaataaaaagagagaaaaaagaagttgt 39844188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 256
Target Start/End: Original strand, 3223090 - 3223125
Alignment:
Q  221 cattgtttttgaccaataaaaagagagaaaaagaag 256  Q
    ||||||||||||||||||| ||||||||||||||||    
T  3223090 cattgtttttgaccaataagaagagagaaaaagaag 3223125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 252
Target Start/End: Complemental strand, 5234441 - 5234410
Alignment:
Q  221 cattgtttttgaccaataaaaagagagaaaaa 252  Q
    ||||||||||||||||||||||||||||||||    
T  5234441 cattgtttttgaccaataaaaagagagaaaaa 5234410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 256
Target Start/End: Complemental strand, 28676124 - 28676089
Alignment:
Q  221 cattgtttttgaccaataaaaagagagaaaaagaag 256  Q
    ||||||||||||||||| ||||||||||||||||||    
T  28676124 cattgtttttgaccaatgaaaagagagaaaaagaag 28676089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 252
Target Start/End: Complemental strand, 32365637 - 32365606
Alignment:
Q  221 cattgtttttgaccaataaaaagagagaaaaa 252  Q
    ||||||||||||||||||||||||||||||||    
T  32365637 cattgtttttgaccaataaaaagagagaaaaa 32365606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 252
Target Start/End: Original strand, 32901430 - 32901461
Alignment:
Q  221 cattgtttttgaccaataaaaagagagaaaaa 252  Q
    ||||||||||||||||||||||||||||||||    
T  32901430 cattgtttttgaccaataaaaagagagaaaaa 32901461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 221 - 262
Target Start/End: Original strand, 9162167 - 9162209
Alignment:
Q  221 cattgtttttgaccaataaaaagagag-aaaaagaagttgtca 262  Q
    ||||||||||||||||| ||||||||| |||||||||||||||    
T  9162167 cattgtttttgaccaatgaaaagagagaaaaaagaagttgtca 9162209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 222 - 256
Target Start/End: Complemental strand, 25241846 - 25241812
Alignment:
Q  222 attgtttttgaccaataaaaagagagaaaaagaag 256  Q
    |||||||||||| ||||||||||||||||||||||    
T  25241846 attgtttttgacaaataaaaagagagaaaaagaag 25241812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 222 - 256
Target Start/End: Original strand, 33438147 - 33438181
Alignment:
Q  222 attgtttttgaccaataaaaagagagaaaaagaag 256  Q
    |||||||||||||||||||||||||||||| ||||    
T  33438147 attgtttttgaccaataaaaagagagaaaatgaag 33438181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 222 - 256
Target Start/End: Complemental strand, 33575043 - 33575009
Alignment:
Q  222 attgtttttgaccaataaaaagagagaaaaagaag 256  Q
    ||||||||||||||||||||| |||||||||||||    
T  33575043 attgtttttgaccaataaaaaaagagaaaaagaag 33575009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 221 - 262
Target Start/End: Original strand, 36512943 - 36512985
Alignment:
Q  221 cattgtttttgaccaataaaaagagaga-aaaagaagttgtca 262  Q
    |||||||||| ||||||||||||||||| ||||||||||||||    
T  36512943 cattgttttttaccaataaaaagagagagaaaagaagttgtca 36512985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 251
Target Start/End: Complemental strand, 839439 - 839410
Alignment:
Q  222 attgtttttgaccaataaaaagagagaaaa 251  Q
    ||||||||||||||||||||||||||||||    
T  839439 attgtttttgaccaataaaaagagagaaaa 839410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 262
Target Start/End: Complemental strand, 16004296 - 16004255
Alignment:
Q  221 cattgtttttgaccaataaaaagagagaaaaagaagttgtca 262  Q
    |||| |||||||||||| |||||||||||||| |||||||||    
T  16004296 cattatttttgaccaatgaaaagagagaaaaaaaagttgtca 16004255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 262
Target Start/End: Original strand, 24772773 - 24772814
Alignment:
Q  222 attgtttttgaccaataaaaagagaga-aaaagaagttgtca 262  Q
    ||||||||||||||||||||||||||| ||||||| ||||||    
T  24772773 attgtttttgaccaataaaaagagagagaaaagaaattgtca 24772814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 258
Target Start/End: Original strand, 34259931 - 34259964
Alignment:
Q  225 gtttttgaccaataaaaagagagaaaaagaagtt 258  Q
    ||||||||||||||| ||||||||||||||||||    
T  34259931 gtttttgaccaataagaagagagaaaaagaagtt 34259964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 262
Target Start/End: Original strand, 48099911 - 48099952
Alignment:
Q  221 cattgtttttgaccaataaaaagagagaaaaagaagttgtca 262  Q
    |||||||||| ||||||||||||||| ||||| |||||||||    
T  48099911 cattgtttttaaccaataaaaagagaaaaaaaaaagttgtca 48099952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 262
Target Start/End: Complemental strand, 53384311 - 53384270
Alignment:
Q  221 cattgtttttgaccaataaaaagagagaaaaagaagttgtca 262  Q
    ||||||||||||||||||| |||||||||||| || ||||||    
T  53384311 cattgtttttgaccaataagaagagagaaaaacaaattgtca 53384270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 221 - 249
Target Start/End: Original strand, 33776995 - 33777023
Alignment:
Q  221 cattgtttttgaccaataaaaagagagaa 249  Q
    |||||||||||||||||||||||||||||    
T  33776995 cattgtttttgaccaataaaaagagagaa 33777023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 221 - 249
Target Start/End: Original strand, 45678364 - 45678392
Alignment:
Q  221 cattgtttttgaccaataaaaagagagaa 249  Q
    |||||||||||||||||||||||||||||    
T  45678364 cattgtttttgaccaataaaaagagagaa 45678392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 221 - 261
Target Start/End: Complemental strand, 46794471 - 46794432
Alignment:
Q  221 cattgtttttgaccaataaaaagagagaaaaagaagttgtc 261  Q
    ||||||||||||||||| |||||||| ||||||||||||||    
T  46794471 cattgtttttgaccaatgaaaagaga-aaaaagaagttgtc 46794432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000009; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 221 - 262
Target Start/End: Complemental strand, 7596861 - 7596820
Alignment:
Q  221 cattgtttttgaccaataaaaagagagaaaaagaagttgtca 262  Q
    |||||||||||||||||||||||| |||||||||| ||||||    
T  7596861 cattgtttttgaccaataaaaagatagaaaaagaaattgtca 7596820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 221 - 262
Target Start/End: Complemental strand, 41293691 - 41293650
Alignment:
Q  221 cattgtttttgaccaataaaaagagagaaaaagaagttgtca 262  Q
    ||||||||||||||||||| |||||||||||| |||||||||    
T  41293691 cattgtttttgaccaataagaagagagaaaaacaagttgtca 41293650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 252
Target Start/End: Original strand, 5359439 - 5359470
Alignment:
Q  221 cattgtttttgaccaataaaaagagagaaaaa 252  Q
    ||||||||||||||||||||||||||||||||    
T  5359439 cattgtttttgaccaataaaaagagagaaaaa 5359470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 252
Target Start/End: Original strand, 33817258 - 33817289
Alignment:
Q  221 cattgtttttgaccaataaaaagagagaaaaa 252  Q
    ||||||||||||||||||||||||||||||||    
T  33817258 cattgtttttgaccaataaaaagagagaaaaa 33817289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 221 - 262
Target Start/End: Original strand, 426202 - 426244
Alignment:
Q  221 cattgtttttgaccaataaaaagagag-aaaaagaagttgtca 262  Q
    ||||||||||||||||| ||||||||| |||||||||||||||    
T  426202 cattgtttttgaccaatgaaaagagagaaaaaagaagttgtca 426244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 221 - 262
Target Start/End: Original strand, 22767231 - 22767273
Alignment:
Q  221 cattgtttttgaccaataaaaagagag-aaaaagaagttgtca 262  Q
    ||||||||||||||||| ||||||||| |||||||||||||||    
T  22767231 cattgtttttgaccaatgaaaagagagaaaaaagaagttgtca 22767273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 221 - 262
Target Start/End: Original strand, 23258133 - 23258175
Alignment:
Q  221 cattgtttttgaccaataaaaagagag-aaaaagaagttgtca 262  Q
    ||||||||||||||||| ||||||||| |||||||||||||||    
T  23258133 cattgtttttgaccaatgaaaagagagaaaaaagaagttgtca 23258175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 221 - 262
Target Start/End: Original strand, 28927782 - 28927824
Alignment:
Q  221 cattgtttttgaccaataaaaagagaga-aaaagaagttgtca 262  Q
    ||||||||||||||||| |||||||||| ||||||||||||||    
T  28927782 cattgtttttgaccaatgaaaagagagagaaaagaagttgtca 28927824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 222 - 252
Target Start/End: Original strand, 36015659 - 36015689
Alignment:
Q  222 attgtttttgaccaataaaaagagagaaaaa 252  Q
    |||||||||||||||||||||||||||||||    
T  36015659 attgtttttgaccaataaaaagagagaaaaa 36015689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 251
Target Start/End: Original strand, 154392 - 154421
Alignment:
Q  222 attgtttttgaccaataaaaagagagaaaa 251  Q
    ||||||||||||||||||||||||||||||    
T  154392 attgtttttgaccaataaaaagagagaaaa 154421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 262
Target Start/End: Original strand, 24503019 - 24503060
Alignment:
Q  222 attgtttttgaccaataaaaagagagaaaaa-gaagttgtca 262  Q
    |||||||||||||||| |||||||||||||| ||||||||||    
T  24503019 attgtttttgaccaatgaaaagagagaaaaatgaagttgtca 24503060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 262
Target Start/End: Complemental strand, 30925624 - 30925583
Alignment:
Q  221 cattgtttttgaccaataaaaagagagaaaaagaagttgtca 262  Q
    |||||||||| |||||| |||||||||||||| |||||||||    
T  30925624 cattgtttttaaccaatgaaaagagagaaaaaaaagttgtca 30925583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 251
Target Start/End: Original strand, 42026474 - 42026503
Alignment:
Q  222 attgtttttgaccaataaaaagagagaaaa 251  Q
    ||||||||||||||||||||||||||||||    
T  42026474 attgtttttgaccaataaaaagagagaaaa 42026503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 262
Target Start/End: Original strand, 44068773 - 44068814
Alignment:
Q  222 attgtttttgaccaataaaaagagagaaaaa-gaagttgtca 262  Q
    ||||||||||||||||| ||||||||||||| ||||||||||    
T  44068773 attgtttttgaccaatagaaagagagaaaaaggaagttgtca 44068814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 223 - 255
Target Start/End: Complemental strand, 6849229 - 6849197
Alignment:
Q  223 ttgtttttgaccaataaaaagagagaaaaagaa 255  Q
    |||||||||||||||||||| ||||||||||||    
T  6849229 ttgtttttgaccaataaaaaaagagaaaaagaa 6849197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 221 - 262
Target Start/End: Original strand, 34474050 - 34474093
Alignment:
Q  221 cattgtttttgaccaat--aaaaagagagaaaaagaagttgtca 262  Q
    |||||||||| ||||||  |||||||||||||||||||||||||    
T  34474050 cattgtttttaaccaatgaaaaaagagagaaaaagaagttgtca 34474093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000009; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 221 - 262
Target Start/End: Complemental strand, 22491999 - 22491958
Alignment:
Q  221 cattgtttttgaccaataaaaagagagaaaaagaagttgtca 262  Q
    ||||| ||||||||||| ||||||||||||||||||||||||    
T  22491999 cattgcttttgaccaatcaaaagagagaaaaagaagttgtca 22491958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 263
Target Start/End: Complemental strand, 1688343 - 1688300
Alignment:
Q  221 cattgtttttgaccaataaaaagaga-gaaaaagaagttgtcaa 263  Q
    |||||||||| ||||||||||||||| |||||||||||||||||    
T  1688343 cattgtttttaaccaataaaaagagaggaaaaagaagttgtcaa 1688300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 252
Target Start/End: Complemental strand, 3660323 - 3660292
Alignment:
Q  221 cattgtttttgaccaataaaaagagagaaaaa 252  Q
    ||||||||||||||||||||||||||||||||    
T  3660323 cattgtttttgaccaataaaaagagagaaaaa 3660292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 222 - 252
Target Start/End: Complemental strand, 3339468 - 3339438
Alignment:
Q  222 attgtttttgaccaataaaaagagagaaaaa 252  Q
    |||||||||||||||||||||||||||||||    
T  3339468 attgtttttgaccaataaaaagagagaaaaa 3339438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 221 - 262
Target Start/End: Original strand, 29383658 - 29383700
Alignment:
Q  221 cattgtttttgaccaataaaaagagag-aaaaagaagttgtca 262  Q
    ||||||||||||||||| ||||||||| |||||||||||||||    
T  29383658 cattgtttttgaccaatgaaaagagagaaaaaagaagttgtca 29383700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 255
Target Start/End: Original strand, 2340500 - 2340533
Alignment:
Q  222 attgtttttgaccaataaaaagagagaaaaagaa 255  Q
    |||||||| |||||||||||||||||||||||||    
T  2340500 attgttttcgaccaataaaaagagagaaaaagaa 2340533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 153
Target Start/End: Original strand, 30622024 - 30622057
Alignment:
Q  120 gagaaatgatatttgtacaactactttcttacaa 153  Q
    ||||||||||||||||||||||||||| ||||||    
T  30622024 gagaaatgatatttgtacaactactttattacaa 30622057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 256
Target Start/End: Complemental strand, 17300 - 17265
Alignment:
Q  221 cattgtttttgaccaataaaaagagagaaaaagaag 256  Q
    |||||||||||||||||||||| |||||||||||||    
T  17300 cattgtttttgaccaataaaaaaagagaaaaagaag 17265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 252
Target Start/End: Complemental strand, 10014925 - 10014894
Alignment:
Q  221 cattgtttttgaccaataaaaagagagaaaaa 252  Q
    ||||||||||||||||||||||||||||||||    
T  10014925 cattgtttttgaccaataaaaagagagaaaaa 10014894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 256
Target Start/End: Original strand, 29034186 - 29034221
Alignment:
Q  221 cattgtttttgaccaataaaaagagagaaaaagaag 256  Q
    ||||||||||||||||| ||||||||||||||||||    
T  29034186 cattgtttttgaccaatgaaaagagagaaaaagaag 29034221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 252
Target Start/End: Complemental strand, 37351960 - 37351929
Alignment:
Q  221 cattgtttttgaccaataaaaagagagaaaaa 252  Q
    ||||||||||||||||||||||||||||||||    
T  37351960 cattgtttttgaccaataaaaagagagaaaaa 37351929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 221 - 262
Target Start/End: Original strand, 2790278 - 2790320
Alignment:
Q  221 cattgtttttgaccaataaaaagagaga-aaaagaagttgtca 262  Q
    ||||||||||||||||| |||||||||| ||||||||||||||    
T  2790278 cattgtttttgaccaatgaaaagagagagaaaagaagttgtca 2790320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 221 - 262
Target Start/End: Original strand, 5978680 - 5978722
Alignment:
Q  221 cattgtttttgaccaataaaaagagagaaaa-agaagttgtca 262  Q
    ||||||||||||||||| ||||||||||||| |||||||||||    
T  5978680 cattgtttttgaccaatgaaaagagagaaaatagaagttgtca 5978722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 221 - 262
Target Start/End: Complemental strand, 33223499 - 33223457
Alignment:
Q  221 cattgtttttgaccaataaaaagaga-gaaaaagaagttgtca 262  Q
    ||||||||||| |||||||||||||| ||||||||||||||||    
T  33223499 cattgtttttggccaataaaaagagaggaaaaagaagttgtca 33223457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 221 - 262
Target Start/End: Original strand, 46651773 - 46651815
Alignment:
Q  221 cattgtttttgaccaataaaaagagagaaaa-agaagttgtca 262  Q
    ||||||||||||||||| ||||||||||||| |||||||||||    
T  46651773 cattgtttttgaccaatgaaaagagagaaaatagaagttgtca 46651815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 262
Target Start/End: Complemental strand, 7390744 - 7390703
Alignment:
Q  221 cattgtttttgaccaataaaaagagagaaaaagaagttgtca 262  Q
    |||| ||||| | |||||||||||||||||||||||||||||    
T  7390744 cattatttttaatcaataaaaagagagaaaaagaagttgtca 7390703  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 256
Target Start/End: Complemental strand, 12232971 - 12232938
Alignment:
Q  223 ttgtttttgaccaataaaaagagagaaaaagaag 256  Q
    |||||||||||||||||| |||||||||||||||    
T  12232971 ttgtttttgaccaataaatagagagaaaaagaag 12232938  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 254
Target Start/End: Complemental strand, 49014369 - 49014336
Alignment:
Q  221 cattgtttttgaccaataaaaagagagaaaaaga 254  Q
    |||||||||||||||||||||| |||||||||||    
T  49014369 cattgtttttgaccaataaaaatagagaaaaaga 49014336  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 221 - 264
Target Start/End: Complemental strand, 10161900 - 10161856
Alignment:
Q  221 cattgtttttgaccaataaaaagagagaaaaa-gaagttgtcaac 264  Q
    |||||||||||||||||||||||| |||||||  |||||||||||    
T  10161900 cattgtttttgaccaataaaaagaaagaaaaacaaagttgtcaac 10161856  T

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Target: scaffold0011 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 221 - 262
Target Start/End: Complemental strand, 219634 - 219592
Alignment:
Q  221 cattgtttttgaccaataaaaagagaga-aaaagaagttgtca 262  Q
    ||||||||||||||||| |||||||||| ||||||||||||||    
T  219634 cattgtttttgaccaatgaaaagagagagaaaagaagttgtca 219592  T

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Target: scaffold0003 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 221 - 255
Target Start/End: Original strand, 337219 - 337253
Alignment:
Q  221 cattgtttttgaccaataaaaagagagaaaaagaa 255  Q
    |||||||||||||||||||||| ||||||||||||    
T  337219 cattgtttttgaccaataaaaaaagagaaaaagaa 337253  T

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Target: scaffold0115 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 262
Target Start/End: Complemental strand, 15158 - 15117
Alignment:
Q  221 cattgtttttgaccaataaaaagagagaaaaagaagttgtca 262  Q
    |||||||||| |||||| |||| |||||||||||||||||||    
T  15158 cattgtttttaaccaatgaaaaaagagaaaaagaagttgtca 15117  T

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Target: scaffold0036 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 262
Target Start/End: Original strand, 18105 - 18146
Alignment:
Q  221 cattgtttttgaccaataaaaagagagaaaaagaagttgtca 262  Q
    |||||||||| |||||| |||||||||||||| |||||||||    
T  18105 cattgtttttaaccaatgaaaagagagaaaaaaaagttgtca 18146  T

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