View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2201_low_5 (Length: 436)
Name: NF2201_low_5
Description: NF2201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2201_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 116 - 421
Target Start/End: Original strand, 7934640 - 7934946
Alignment:
| Q |
116 |
cattgttacaatatgtgccatagacgagttctttgtttctcgataagattcagattttagattaaaaaataataattggtcataagataccatttagtga |
215 |
Q |
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| T |
7934640 |
cattgttacaatatgtgccatagacgagttctttgtttctcgataagattcagattttagattaaaaaataataattggtcataagataccatttagtga |
7934739 |
T |
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| Q |
216 |
ctacctatgatgattatatgaattaatatttaaccaaaagttaaggccaatgttttgcatagtttgctttgttgggaacaatgtttatctccattacaaa |
315 |
Q |
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| T |
7934740 |
ctacctaggatgattatatgaattaatatttaaccaaaagttaaggccaatgttttgcatagtttgctttgttgggaacaatgtttgtctccattacaaa |
7934839 |
T |
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| Q |
316 |
caaatgtttcatcattatcttatttttcattgttgtgtcttatgtacatccattatataaatgcaatggcctt-gcataattgtccacactgataccctc |
414 |
Q |
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| T |
7934840 |
caaatgtttcatcattatcttatttttcattgttgtgtcttatgtacatccattatataaatgcaatggccttcacataattgtccacactgataccctc |
7934939 |
T |
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| Q |
415 |
ccctttg |
421 |
Q |
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| T |
7934940 |
ccctttg |
7934946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 13 - 156
Target Start/End: Original strand, 7934497 - 7934640
Alignment:
| Q |
13 |
tcatcagcaccacatttggtaacccctgttccattttttcctgtgtattatgtaatatttctcatgaaaaatacataatattttgttcgttattctttca |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
7934497 |
tcatcagcaccacatttggtaacccctgttccattttttcctgtgtattatgtaatatttctcatgaaaaatacataatattttgttcattattctttca |
7934596 |
T |
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| Q |
113 |
ttccattgttacaatatgtgccatagacgagttctttgtttctc |
156 |
Q |
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| T |
7934597 |
ttccattgttacaatatgtgccatagacgagttctttgtttctc |
7934640 |
T |
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