View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2201_low_6 (Length: 406)
Name: NF2201_low_6
Description: NF2201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2201_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 17 - 396
Target Start/End: Complemental strand, 33635442 - 33635063
Alignment:
| Q |
17 |
cacctcattctaacttgtgtttgtgtggcattgcagcttcctacttgaaatcatggaccctattcaacaaacaaaagaaaaatggaagggcaaagccaaa |
116 |
Q |
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| T |
33635442 |
cacctcattctaacttgtgtttgtgtggcattgcagcttcctacttgaaatcatggaccctattcaacaaacaaaagaaaaatggaagggcaaagccaaa |
33635343 |
T |
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| Q |
117 |
acagaagtggtaggatgcaaagctgaacaagtatggccacttttggaggannnnnnnggccttgacaaatggtttccaactctctctacatgcattccaa |
216 |
Q |
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| T |
33635342 |
acagaagtggtaggatgcaaagctgaacaagtatggccacttttggaggatttttttggccttgacaaatggtttccaactctctctacatgcattccaa |
33635243 |
T |
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| Q |
217 |
ttgaaggaatatccggcaaacccggttgtgtccgattttgtgccggtttcaagactcctgtggatgaagatggcaaacaatctttgaattggacaaagca |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33635242 |
ttgaaggaatatccggcaaacccggttgtgtccgattttgtgccggtttcaagactcctgtggatgaagatggcaaacaatctttgaattggacaaagca |
33635143 |
T |
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| Q |
317 |
gaaacttctttcaattgatccaattcaaagggtgtttacctatgcaattattgatggaaatgttggattttattcctatg |
396 |
Q |
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| T |
33635142 |
gaaacttctttcaattaatccaattcaaagggtgtttacctatgcaattattgatggaaatgttggattttattcctatg |
33635063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 21 - 396
Target Start/End: Complemental strand, 33650587 - 33650211
Alignment:
| Q |
21 |
tcattctaacttgtgtttgtgtggcattgcagcttccta-cttgaaatcatggaccctattcaacaaacaaaagaaaaatggaagggcaaagccaaaaca |
119 |
Q |
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|||| |||||||||||||||| ||||||||| ||||||| |||||||||||| || |||||||||||||||||||||||||| | ||||| |||||||| |
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| T |
33650587 |
tcatcctaacttgtgtttgtgaggcattgcaacttcctaacttgaaatcatgaacactattcaacaaacaaaagaaaaatggcaaggcaaggccaaaact |
33650488 |
T |
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| Q |
120 |
gaagtggtaggatgcaaagctgaacaagtatggccacttttggaggannnnnnnggccttgacaaatggtttccaactctctctacatgcattccaattg |
219 |
Q |
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||| | |||||||||||||| || ||||||||||| || ||||| || || ||||| ||||||||||||||||||||| ||||||||| ||| |
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| T |
33650487 |
gaattagtaggatgcaaagcagaccaagtatggcctctcttggaagatttttttggtcttgataaatggtttccaactctctcttattgcattccagttg |
33650388 |
T |
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| Q |
220 |
aaggaatatccggcaaacccggttgtgtccgattttgtgccggtttcaagactcctgtggatgaagatggcaaacaatctttgaattggacaaagcagaa |
319 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||| || ||||||||||| ||||||||||| |||||||| |
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| T |
33650387 |
aaggaatatccggcaaacccggttgtgtccgattctgtgccggtttcaagactccagttgataaacatggcaaacaaaacttgaattggactaagcagaa |
33650288 |
T |
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| Q |
320 |
acttctttcaattgatccaattcaaagggtgtttacctatgcaattattgatggaaatgttggattttattcctatg |
396 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||| |
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| T |
33650287 |
acttctttcaattgatccaattcaaagggtgtttagctatgcaattgttgatggaaatgttggatttcattcctatg |
33650211 |
T |
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