View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2202_high_2 (Length: 509)
Name: NF2202_high_2
Description: NF2202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2202_high_2 |
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| [»] scaffold0018 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 496
Target Start/End: Original strand, 34748494 - 34748993
Alignment:
| Q |
1 |
aatgaacatgacgatggttgcatgaataaattttaaaatgtgtgttgaaacactacattttaagtttgattcaccactatcagtttataacaatcaaatg |
100 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34748494 |
aatgaacatgacaatggttgcatgaataaattttaaaatgtgtgtggaaacactacgttttaagtttgattcaccactatcagtttataacaatcaaatg |
34748593 |
T |
|
| Q |
101 |
caaatgagtatattgactaattct-tttagcatacattgaaatcattgacatcaattgcaaactcatatcaaatgtatctccatcaat----gatcgttc |
195 |
Q |
| |
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|||||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||| |
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| T |
34748594 |
caaatgagtatattgactaattctctttagcatactttgaaatcattgacatgaattgcaaactcatatcaaatgta--tccatcaatgatcgatcgttc |
34748691 |
T |
|
| Q |
196 |
acgggacaaagttccgtcaatttctttcgtgcgtgcacgagaaaagnnnnnnnngaatgaatgatttataataattttgacttaagaaatgaaaaatctg |
295 |
Q |
| |
|
||| || ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
34748692 |
acgagataaagttccgccaatttctttcgtgcgtgcacgagaaaagaaaaaaaagaatgaatgatttataataattttgacttaagaaatgaaaaatccg |
34748791 |
T |
|
| Q |
296 |
tggtcccaaatgtc-nnnnnnnngtagtgttacgatgcaacgaaagtgtctttattttgttattggaataaagtgttagataattagtttatttaaataa |
394 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |
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| T |
34748792 |
tggtcccaaatgtctttttttttgtagtgttacgatgtaacgaaagtgtctttattttattataggaataaagtgttagataattagtttatttaaataa |
34748891 |
T |
|
| Q |
395 |
tatttatcttatgtcattttactcttttagccttgagggttgtatttaaacttgaccatgtgcttcatttctaatcaatcaatcatttcaacaattatct |
494 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
34748892 |
tatttaccttatgtcattttactcttttagccttgagggttgtatttaaacttgaccatgtgcctcatttctaatcaatcaatcatttcaacaattatct |
34748991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 453 - 500
Target Start/End: Complemental strand, 29160512 - 29160465
Alignment:
| Q |
453 |
tgtgcttcatttctaatcaatcaatcatttcaacaattatcttcatct |
500 |
Q |
| |
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|||| ||||||| |||||||||| ||||||||||||||||||||||| |
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| T |
29160512 |
tgtgattcatttggaatcaatcaaacatttcaacaattatcttcatct |
29160465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 1e-30; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 352 - 495
Target Start/End: Original strand, 38464153 - 38464296
Alignment:
| Q |
352 |
tgttattggaataaagtgttagataattagtttattt-aaataatatttatcttatgtcattttactcttttagccttgagggttgtatttaaacttgac |
450 |
Q |
| |
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|||||| ||||| || |||| ||||||||||||||| |||||| ||||| ||| |||||||||| ||||||||||| |||||||||||||||||||| | |
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| T |
38464153 |
tgttataggaatttagcgttacataattagtttattttaaataacatttagcttgtgtcattttaatcttttagcctcgagggttgtatttaaacttggc |
38464252 |
T |
|
| Q |
451 |
catgtgcttcatttctaatcaatcaatcatttcaacaattatctt |
495 |
Q |
| |
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| T |
38464253 |
cttgtgcctcatttgaaatcaatcaat-atttcaacaattatctt |
38464296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 359 - 495
Target Start/End: Original strand, 38450309 - 38450445
Alignment:
| Q |
359 |
ggaataaagtgttagataattagtttattt-aaataatatttatcttatgtcattttactcttttagccttgagggttgtatttaaacttgaccatgtgc |
457 |
Q |
| |
|
||||||||| |||||||||||| ||||||| |||||| ||||| | ||||| |||||||||||||| ||| |||| |||||||||||| |||| ||||| |
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| T |
38450309 |
ggaataaagcgttagataattaatttattttaaataacatttaccgtatgttattttactcttttaacctcgaggattgtatttaaacatgacattgtgc |
38450408 |
T |
|
| Q |
458 |
ttcatttctaatcaatcaatcatttcaacaattatctt |
495 |
Q |
| |
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|||||| ||||||||||| ||||||||||||||||| |
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| T |
38450409 |
ctcatttgaaatcaatcaat-atttcaacaattatctt |
38450445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 411 - 464
Target Start/End: Complemental strand, 6646804 - 6646752
Alignment:
| Q |
411 |
ttttactcttttagccttgagggttgtatttaaacttgaccatgtgcttcattt |
464 |
Q |
| |
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|||||| ||||||||||||||||| ||||||||||||| || |||||||||||| |
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|
| T |
6646804 |
ttttacccttttagccttgagggt-gtatttaaacttggccttgtgcttcattt |
6646752 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 4e-24; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 359 - 496
Target Start/End: Complemental strand, 26371242 - 26371111
Alignment:
| Q |
359 |
ggaataaagtgttagataattagtttatttaaataatatttatcttatgtcattttactcttttagccttgagggttgtatttaaacttgaccatgtgct |
458 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||| || | ||| |
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| T |
26371242 |
ggaataaagtgttagatatttagttattttaaatagcatttaccttatgtcattttactcttttagccttgagggttgtat----acttggccttctgcc |
26371147 |
T |
|
| Q |
459 |
tcatttctaatcaatcaatcatttcaacaattatcttc |
496 |
Q |
| |
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|||||| ||||||||||| |||||||||||||||| |
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|
| T |
26371146 |
tcatttgcaatcaatcaat--attcaacaattatcttc |
26371111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 407 - 501
Target Start/End: Original strand, 20868166 - 20868261
Alignment:
| Q |
407 |
gtcattttactcttttagccttgagggttgtatttaaacttgaccatgtgcttcattt-ctaatcaatcaatcatttcaacaattatcttcatctc |
501 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||| || | |||| |||||| |||||||||| ||||| ||||||||||||| |||| |
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| T |
20868166 |
gtcattttactcttttagccttgatagttgtatttaaatatggcttggtgcctcatttgacaatcaatcaaacattttaacaattatcttcttctc |
20868261 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 386 - 495
Target Start/End: Complemental strand, 187834 - 187727
Alignment:
| Q |
386 |
tttaaataatatttatcttatgtcattttactcttttagccttgagggttgtatttaaacttgaccatgtgcttcatttctaatcaatcaatcatttcaa |
485 |
Q |
| |
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||||||||||||||| ||||||| |||||||| |||||| ||||||||| ||||||||||||| | ||||| |||||| ||||||| || |||||||| |
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| T |
187834 |
tttaaataatatttaccttatgttattttact-ttttagtcttgagggtagtatttaaacttg-gcttgtgcctcatttgcaatcaattaaacatttcaa |
187737 |
T |
|
| Q |
486 |
caattatctt |
495 |
Q |
| |
|
|||||||||| |
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|
| T |
187736 |
caattatctt |
187727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 397 - 496
Target Start/End: Original strand, 39624020 - 39624119
Alignment:
| Q |
397 |
tttatcttatgtcattttactcttttagccttgagggttgtatttaaacttgaccatgtgcttcatttctaatcaatcaatcatttcaacaattatcttc |
496 |
Q |
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||||| |||||||||| ||||| |||||||| |||||||||||||||| ||| | ||| | | |||| |||||||||| ||||||||||||||||||| |
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| T |
39624020 |
tttattttatgtcattatactcatttagcctcgagggttgtatttaaaattggtcttgtaccttatttgaaatcaatcaaacatttcaacaattatcttc |
39624119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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