View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2202_high_3 (Length: 443)
Name: NF2202_high_3
Description: NF2202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2202_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 159; Significance: 2e-84; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 10 - 267
Target Start/End: Original strand, 5466354 - 5466618
Alignment:
| Q |
10 |
aagaatatccaaacaacagaaagtacaaaatgttgtaaatcat-------gaggaatgaggaacaaaatttctaaagagggtgtattattgaaatgcacc |
102 |
Q |
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| T |
5466354 |
aagaatatccaaacaacagaaagtacaaaatgttgtaaatcatgactcatgaggaatgaggaacaaaatttctaaagagggtgttttattgaaatgcacc |
5466453 |
T |
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| Q |
103 |
atcaagaatatgtttggtttgacgttaaaggcaccgaacatacttatgatgcagaaccaaacacacacttaagatgtagaatcaagcacattcaccacaa |
202 |
Q |
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| T |
5466454 |
atcaagagtacgtttggtttggcgttaaaggcaccgaacatactcttgatgcagaaccaaatacacgcttaagatgcagagtcaaacattttcgctataa |
5466553 |
T |
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| Q |
203 |
ttttgcagaagttaaaaaaccaagcttctactgggtgttgaaagtttgtcgcgattttaagtaaa |
267 |
Q |
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| T |
5466554 |
ttttgcaggagttaaaaaaccaagtttctaccgggtgttgaaagtttgtcacgattttaagtaaa |
5466618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 266 - 427
Target Start/End: Original strand, 5466703 - 5466858
Alignment:
| Q |
266 |
aaaataactaatacttttaattactcctattattcaaatatgttgattttaggatatgtttttatcataaactatgactataagttgatccgtgacctta |
365 |
Q |
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| T |
5466703 |
aaaataaataatacttttaattactactattattcaaatatgttgattttaggatatgtttttatcataaacta------taagttgatccgtgacctta |
5466796 |
T |
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| Q |
366 |
cctgtcacccaagtttcaattgcacattattatcaatggtctcacttgttggccacccctgt |
427 |
Q |
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| T |
5466797 |
cctgtcacccaagttccaattgcacattattatcaatggtctcacttgttggccacccctgt |
5466858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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