View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2202_high_4 (Length: 391)
Name: NF2202_high_4
Description: NF2202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2202_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 17 - 371
Target Start/End: Complemental strand, 46640326 - 46639969
Alignment:
| Q |
17 |
ttatgtctataccagcaacggtattgatgtaaggatcatctagtgacggtgcacaaaagatacctgtgtagttgcatacatttgggccataccagtttaa |
116 |
Q |
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| T |
46640326 |
ttatgtctataccagcaacggtattgatgtaaggatcatctagtgacggtgcacaaaagatacctgtgtagttgcatacatttgggccataccagtttaa |
46640227 |
T |
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| Q |
117 |
ggtggtgttttttgggtctgaggtgaatgtttgtttccatgcttggagtgctatgtaggctttggtgagtcttgggtttagtggtggtagagattggtgt |
216 |
Q |
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| T |
46640226 |
ggtggtgttttttgggtctgaggtgaatgtttgtttccatgcttggagtgctatgtaggctttggtgagtcttgggtttagtggtggtagagattggtgt |
46640127 |
T |
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| Q |
217 |
gatgaggggttgatggatatgagaatgacaatgaaggtaattaagaattgtagactataagaggattccattactgataatggatgggtttgattttgtg |
316 |
Q |
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| T |
46640126 |
gatgaggggttgatggatatgagaatgacaatgaaggtaattaagaattgtagactataagaggattccattactgataatggatgggtttgattttgtg |
46640027 |
T |
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| Q |
317 |
ttatgggaatgcgaatttatataa---atgtgtgtatgttggagaaatattggaagtt |
371 |
Q |
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| T |
46640026 |
ttatgggaatgtgaatttatataaggggtgtgtgtatgttggagaaattttggaagtt |
46639969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 17 - 376
Target Start/End: Complemental strand, 46642618 - 46642259
Alignment:
| Q |
17 |
ttatgtctataccagcaacggtattgatgtaaggatcatctagtgacggtgcacaaaagatacctgtgtagttgcatacatttgggccataccagtttaa |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
46642618 |
ttatgtctataccagcaacggtattgatgtaaggatcatctagtgacggtgcacaaatgatacctgtgtagttgcatacatttgggccataccagtttaa |
46642519 |
T |
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| Q |
117 |
ggtggtgttttttgggtctgaggtgaatgtttgtttccatgcttggagtgctatgtaggctttggtgagtcttgggtttagtggtggtagagattggtgt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
46642518 |
agtggtgttttttgggtctgaggtgaatgtttgtttccatgcttggagtgctatgtaggctttggtgagtcttggatttagtggtggtagagattggtgt |
46642419 |
T |
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| Q |
217 |
gatgaggggttgatggatatgagaatgacaatgaaggtaattaagaattgtagactataagaggattccattactgataatggatgggtttgattttgtg |
316 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||| || | |||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
46642418 |
gatgaggggttgatggatatgagaatgacaatgaaggaaattaagagttttggactataagaggattccattaccgataatggatgggtttgattttgtg |
46642319 |
T |
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| Q |
317 |
ttatgggaatgcgaatttatataaatgtgtgtatgttggagaaatattggaagttagtgt |
376 |
Q |
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| T |
46642318 |
ttatgggaatgtgaatttatataaatgtgtgtatgttggagaaatattggaagttagtgt |
46642259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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