View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2202_high_9 (Length: 239)
Name: NF2202_high_9
Description: NF2202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2202_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 52698025 - 52698256
Alignment:
| Q |
1 |
ttttatggattttc-agtgaacgaggttgtagagaggtttgcgttcttgggacttactgtgaacttgaccaattacttgataagtcaaatgaatgaaaca |
99 |
Q |
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| T |
52698025 |
ttttatggattttccagtgaacgaggttgtagagaggtttgcgttcttgggacttactgtgaacttgaccaattacttgataagtcaaatgaatgaaaca |
52698124 |
T |
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| Q |
100 |
attccagatgctgctactcatgtcacagactggactggagctgcttatgtcctcactatctttggagcgtttattgcagatgcttaccttggtcgattta |
199 |
Q |
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| T |
52698125 |
attccagatgctgctactcatgtcacagactggactggagctgcttatgtcctcactatctttggagcgtttattgcagatgcttaccttggtcgattta |
52698224 |
T |
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| Q |
200 |
gaaccatcattgttttctctaccatctgtgct |
231 |
Q |
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| T |
52698225 |
gaaccatcattgttttctctaccatctatgct |
52698256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 11 - 218
Target Start/End: Original strand, 52711706 - 52711913
Alignment:
| Q |
11 |
tttcagtgaacgaggttgtagagaggtttgcgttcttgggacttactgtgaacttgaccaattacttgataagtcaaatgaatgaaacaattccagatgc |
110 |
Q |
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| T |
52711706 |
tttcagtgaacgaggtgatagagaggttggcgttctttgcgattgcagtgaatatgacggcttacttggtatttcaaatgcatcaatcgcttccagatgc |
52711805 |
T |
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| Q |
111 |
tgctactcatgtcacagactggactggagctgcttatgtcctcactatctttggagcgtttattgcagatgcttaccttggtcgatttagaaccatcatt |
210 |
Q |
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| T |
52711806 |
tgctactcatgtcacagactggattggagctgcctatgtactcaccctctttggagcatttctagcagatgcttattttggtcgcttcaaaactatcatt |
52711905 |
T |
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| Q |
211 |
gttttctc |
218 |
Q |
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|||||||| |
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| T |
52711906 |
gttttctc |
52711913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 84 - 218
Target Start/End: Original strand, 52720658 - 52720792
Alignment:
| Q |
84 |
tcaaatgaatgaaacaattccagatgctgctactcatgtcacagactggactggagctgcttatgtcctcactatctttggagcgtttattgcagatgct |
183 |
Q |
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||||||| || || || |||| ||||||||||||||||||||||||||| |||||||||| ||||| ||||| |||||||||| ||| | ||||||||| |
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| T |
52720658 |
tcaaatgcatcaatcacttccggatgctgctactcatgtcacagactgggctggagctgcctatgtactcaccctctttggagcatttctagcagatgct |
52720757 |
T |
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| Q |
184 |
taccttggtcgatttagaaccatcattgttttctc |
218 |
Q |
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|| | ||||| || | ||| || ||||||||||| |
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| T |
52720758 |
tatttgggtcgcttcaaaactattattgttttctc |
52720792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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