View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2202_low_5 (Length: 331)
Name: NF2202_low_5
Description: NF2202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2202_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 10 - 316
Target Start/End: Complemental strand, 35080058 - 35079751
Alignment:
| Q |
10 |
aaaagaacaaagagtattaatggctggtggatttgcttgactcgatttacgcaaaaaactgtctttactctttagtattcttttgttaaaaagaacggtt |
109 |
Q |
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| T |
35080058 |
aaaagaacaaagagtattaatggctggtggatttgcttgactcgatttacgcaaaaaactgtctttactctttagtattcttttgttaaaaagaacggtt |
35079959 |
T |
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| Q |
110 |
ttaaaaccgtcatttttgagat-acatgtaaaatttgcctataaattaagaaccataaagtaagttctatagttcattataattaacaaaagtgaaatgg |
208 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
35079958 |
ttaaaaccgtcatttttgagatgacatgtaaaatttgcctataaattaagaaccataaagtaagttctatagttcattataattaacaaaagagaaatgg |
35079859 |
T |
|
| Q |
209 |
caccttcagcttgtttatccgttttgctcgctatttcaatgatctttatttcccatgccatttcactaccaacaccaagccccaagttgtacaaaagtgt |
308 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35079858 |
caccttcagcttgtttatccgttttgctcgttatttcaatgatctttatttcccatgccatttcactaccaacaccaagccccaagttgtacaaaagtgt |
35079759 |
T |
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| Q |
309 |
atgtaaag |
316 |
Q |
| |
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|||||||| |
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| T |
35079758 |
atgtaaag |
35079751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 184 - 300
Target Start/End: Complemental strand, 35074911 - 35074798
Alignment:
| Q |
184 |
attataattaacaaaagtgaaatggcaccttcagcttgtttatccgttttgctcgctatttcaatgatctttatttcccatgccatttcactaccaacac |
283 |
Q |
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| T |
35074911 |
attataattaacaaaatagaaatggcaccttcaacatacttatccttttttatcattatttcaatgatctttatttgtcatgccctttc---accaacac |
35074815 |
T |
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| Q |
284 |
caagccccaagttgtac |
300 |
Q |
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||||||| ||||||||| |
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| T |
35074814 |
caagccctaagttgtac |
35074798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 203 - 311
Target Start/End: Complemental strand, 23915179 - 23915074
Alignment:
| Q |
203 |
aaatggcaccttcagcttgtttatccgttttgctcgctatttcaatgatctttatttcccatgccatttcactaccaacaccaagccccaagttgtacaa |
302 |
Q |
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|||||||| ||||| | | ||||||| |||||||| | |||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||| | |
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| T |
23915179 |
aaatggcatcttcaacctatttatccattttgctcaccatttcaatgatctttatttcccatgccaattc---accaacaccaagcctcaagttgtacca |
23915083 |
T |
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| Q |
303 |
aagtgtatg |
311 |
Q |
| |
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|| |||||| |
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| T |
23915082 |
aaatgtatg |
23915074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 174 - 274
Target Start/End: Complemental strand, 23922858 - 23922757
Alignment:
| Q |
174 |
tctatagttcattataattaacaaaagtgaaa-tggcaccttcagcttgtttatccgttttgctcgctatttcaatgatctttatttcccatgccatttc |
272 |
Q |
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||||| || |||||||||||||||||| |||| ||||| ||||||| | ||||||| |||||||| | ||||||||||||||| |||| ||||||||||| |
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| T |
23922858 |
tctattgtccattataattaacaaaagagaaaatggcatcttcagcctatttatccattttgctcaccatttcaatgatctttgtttctcatgccatttc |
23922759 |
T |
|
| Q |
273 |
ac |
274 |
Q |
| |
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|| |
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|
| T |
23922758 |
ac |
23922757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 316
Target Start/End: Complemental strand, 24436275 - 24436206
Alignment:
| Q |
244 |
tcaatgatctttatttcccatgccatttcactaccaacaccaagccccaagttgtacaaaagtgtatgtaaag |
316 |
Q |
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||||||||||||||||| || |||||||||| ||||| ||||||| || ||||| |||||||||||||||| |
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| T |
24436275 |
tcaatgatctttatttctcacgccatttcac---caacatcaagccctaacttgtataaaagtgtatgtaaag |
24436206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 274
Target Start/End: Complemental strand, 25803278 - 25803209
Alignment:
| Q |
205 |
atggcaccttcagcttgtttatccgttttgctcgctatttcaatgatctttatttcccatgccatttcac |
274 |
Q |
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|||||||||||| | | |||||| |||||||| | ||||||||||| |||||||| ||||| ||||||| |
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| T |
25803278 |
atggcaccttcaacatatttatcatttttgctcaccatttcaatgatgtttatttctcatgctatttcac |
25803209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 222 - 316
Target Start/End: Original strand, 13435801 - 13435892
Alignment:
| Q |
222 |
tttatccgttttgctcgctatttcaatgatctttatttcccatgccatttcactaccaacaccaagccccaagttgtacaaaagtgtatgtaaag |
316 |
Q |
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||||||| | |||||| | || ||||||||||||||||| || |||||||||| | ||| ||||||| || |||||||||||||||||||||| |
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| T |
13435801 |
tttatccttattgctcaccatatcaatgatctttatttctcacgccatttcacga---acatcaagccctaatttgtacaaaagtgtatgtaaag |
13435892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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