View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2202_low_6 (Length: 288)
Name: NF2202_low_6
Description: NF2202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2202_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 19 - 278
Target Start/End: Original strand, 34748241 - 34748493
Alignment:
| Q |
19 |
gctaaggaagaatgatgctacatgtgatgtgagcttctgaaaacaagtttgttattgaaacaggttgatagaatatcgtgctcagaattctacaagaagc |
118 |
Q |
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| T |
34748241 |
gctaaggaagaatgatgctacatgt-----gagcttctgaaaacaagtttgttattgaaagaggttgatagaatatcgtgctcagaattctacaagaagc |
34748335 |
T |
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| Q |
119 |
gggttaaatttacttgttttcgtaaacaaagagttgctcatgttgcacttgaa-ttgagtaacaatctttttattagtatcagttatcaacaagaccacg |
217 |
Q |
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| T |
34748336 |
gggttaaacttacttg-tttcgtaaacaaagggttgctcacgttgcacttgaatttgagtaataatctttttattagtatcagttatcaacaagaccacg |
34748434 |
T |
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| Q |
218 |
tctcttaaatcttgtgttggggaaccgctgcatatatcttaaacaagaagaacatgatgat |
278 |
Q |
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| T |
34748435 |
tctcttaaatcttgtgttggggaaccgctgc--atatcttaaacaagaagaacatgatgat |
34748493 |
T |
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