View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2202_low_7 (Length: 251)
Name: NF2202_low_7
Description: NF2202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2202_low_7 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 46642034 - 46642282
Alignment:
| Q |
1 |
ggtgcaaattatgtcactgcagaagatgggagagatttccaccggaggaaatccacatgcacgaaatccatgaaggataccacctaaaaatgtgaatatt |
100 |
Q |
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| T |
46642034 |
ggtgtaaattatgtcactgcagaggattggagagatttccaccgaaggaaatccacatgcacgaaatccatgaaggataccacttaaaaatgtgaatatt |
46642133 |
T |
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| Q |
101 |
ttcatttgttaagattaattacctaccattcttttatggataacctatatgtcacaccatttaaatgtctaaccaaaccaattacattattattttataa |
200 |
Q |
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| T |
46642134 |
t--attcgttagtataaattacctactattcttttataggtaacctagatgtcacaccatttaaacgtctaaccaaaccaattacattattattttataa |
46642231 |
T |
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| Q |
201 |
gagtaatgtcaatttgcagcacaacaaacactaacttccaatatttctcca |
251 |
Q |
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| T |
46642232 |
gagtaacgtcaatttgcagcacaacaaacactaacttccaatatttctcca |
46642282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 160 - 251
Target Start/End: Original strand, 46639893 - 46639987
Alignment:
| Q |
160 |
tttaaatgtctaaccaaaccaattac---attattattttataagagtaatgtcaatttgcagcacaacaaacactaacttccaatatttctcca |
251 |
Q |
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| T |
46639893 |
tttaaatgtctaaccaaaccaatcactctattattattttataagagtaatgtcaatttgcagcacaacaaacagaaacttccaaaatttctcca |
46639987 |
T |
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